G172283


Basic Information

Item Value
gene id G172283
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2649458 ~ 2729174 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU233440
gtggtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtg
>TU233441
gtctgtctgtctgtctgtgtgtctgtctgtctgtctgtgtgtgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233440 False 297 lncRNA 0.51 3 2649458 2729174
TU233441 True 299 lncRNA 0.50 3 2649458 2655894

Neighbor

gene id symbol gene type direction distance location
dcp2 dcp2 coding downstream 369647 2253897 ~ 2279811 (-)
LOC120545833 NA coding downstream 396503 2179488 ~ 2252955 (-)
hmgcs1 hmgcs1,LOC107394923,LOC105917111,LOC102790295 coding downstream 490407 2145367 ~ 2159051 (-)
tln1 tln1,LOC100711808 coding downstream 576352 1948903 ~ 2073106 (-)
tpm2 tpm2,LOC106571564,LOC107394912,LOC103389160,LOC108276716,LOC108427282,LOC107737084,LOC108242564,LOC103044350,LOC107670037,LOC107102752,LOC102218310,LOC107572193 coding downstream 705948 1887537 ~ 1943510 (-)
mbd2 mbd2,LOC100708236,LOC103373628 coding upstream 439452 3168626 ~ 3246890 (-)
LOC120545955 NA coding upstream 548375 3277549 ~ 3281952 (-)
june LOC100707786,LOC102781123,LOC101463670,LOC102205300,LOC105936581 coding upstream 734728 3463902 ~ 3475242 (-)
LOC120544885 NA coding upstream 754551 3483725 ~ 3505303 (-)
LOC120546063 NA coding upstream 823264 3552438 ~ 3582804 (-)
LOC120544955 NA non-coding downstream 242590 2405775 ~ 2406868 (-)
G172235 NA non-coding downstream 307427 2341626 ~ 2342031 (-)
G172231 NA non-coding downstream 319488 2329685 ~ 2329970 (-)
G172180 NA non-coding downstream 552294 2090423 ~ 2097164 (-)
G172151 NA non-coding downstream 559479 2089713 ~ 2089979 (-)
LOC120545025 NA non-coding upstream 79800 2808974 ~ 2809530 (-)
G172295 NA non-coding upstream 143682 2872856 ~ 2873112 (-)
G172312 NA non-coding upstream 258035 2987209 ~ 2987606 (-)
G172313 LOC104947167 non-coding upstream 258763 2987937 ~ 2988216 (-)
G172342 NA non-coding upstream 422887 3152061 ~ 3152756 (-)
G172032 NA other downstream 1047302 1596516 ~ 1602156 (-)
G171868 NA other downstream 1478669 1170203 ~ 1170789 (-)
megf10 megf10 other downstream 1502871 1040798 ~ 1146587 (-)
prrc1 prrc1 other downstream 1641270 994437 ~ 1008188 (-)
G172311 NA other upstream 255648 2984822 ~ 2985260 (-)
G172620 NA other upstream 1157414 3886588 ~ 3943831 (-)
cdk9 cdk9 other upstream 1409992 4139166 ~ 4147813 (-)
dpm2 dpm2 other upstream 1823697 4552871 ~ 4559768 (-)
G172920 NA other upstream 2041643 4770817 ~ 4771303 (-)

Expression


Co-expression Network