G172443


Basic Information

Item Value
gene id G172443
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3362747 ~ 3363219 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU233628
TCAGTTAAAATTAAAGGAATAAACAAGCTAAAAGTCGGTGTTGGCAATTCACCATGCGCACCAAAAGCCAGCAACAACAGTGCCAAGCAGTAGCGACACGCTGTGTAGTTCGCGGCCAAAACAAAGCTGTGCAGTTAGCAGCCGAGGCACAGCAGCAGACAAGGCTGTGTAGTTAGCAGCAGAGAAAGCTGTACAATTAGCAGCATTTAGCAGTGGAGACAAAGGCAGACCAAGCAGCATTTAGCAGTGGAAACAAAAGCAGACCAAGCAGCATTTAGCAGTGGAGACAAAACAGCAGCGGCCCCAATCAGCTGGTGGTGGAATCACCTCAATCACCACCGGTAGACTTCGGCCAGCTGATGAGCATTCCCTGTTTTCAAAGTCAAACCTGCACag

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU233628 True 396 lncRNA 0.49 2 3362747 3363219

Neighbor

gene id symbol gene type direction distance location
LOC120545955 NA coding downstream 80795 3277549 ~ 3281952 (-)
mbd2 mbd2,LOC100708236,LOC103373628 coding downstream 115857 3168626 ~ 3246890 (-)
dcc dcc,LOC102787302 coding downstream 555283 2469175 ~ 2807464 (-)
dcp2 dcp2 coding downstream 1082936 2253897 ~ 2279811 (-)
LOC120545833 NA coding downstream 1109792 2179488 ~ 2252955 (-)
june LOC100707786,LOC102781123,LOC101463670,LOC102205300,LOC105936581 coding upstream 100683 3463902 ~ 3475242 (-)
LOC120544885 NA coding upstream 120506 3483725 ~ 3505303 (-)
LOC120546063 NA coding upstream 189219 3552438 ~ 3582804 (-)
crata LOC100707255,LOC102203594,LOC102307831 coding upstream 237319 3600538 ~ 3630312 (-)
ier5l ier5l,LOC102782588 coding upstream 320324 3683543 ~ 3685682 (-)
G172439 NA non-coding downstream 4227 3358125 ~ 3358520 (-)
G172432 NA non-coding downstream 35513 3325766 ~ 3327234 (-)
LOC120545949 NA non-coding downstream 195391 3159271 ~ 3167356 (-)
G172342 NA non-coding downstream 209991 3152061 ~ 3152756 (-)
G172313 LOC104947167 non-coding downstream 374531 2987937 ~ 2988216 (-)
G172444 NA non-coding upstream 298 3363517 ~ 3370798 (-)
G172468 NA non-coding upstream 97126 3460345 ~ 3463100 (-)
G172504 NA non-coding upstream 154790 3518009 ~ 3518953 (-)
G172507 NA non-coding upstream 177056 3540275 ~ 3547689 (-)
G172549 NA non-coding upstream 304709 3667928 ~ 3668180 (-)
G172311 NA other downstream 377487 2984822 ~ 2985260 (-)
G172032 NA other downstream 1760591 1596516 ~ 1602156 (-)
G171868 NA other downstream 2191958 1170203 ~ 1170789 (-)
megf10 megf10 other downstream 2216160 1040798 ~ 1146587 (-)
prrc1 prrc1 other downstream 2354559 994437 ~ 1008188 (-)
G172620 NA other upstream 523369 3886588 ~ 3943831 (-)
cdk9 cdk9 other upstream 775947 4139166 ~ 4147813 (-)
dpm2 dpm2 other upstream 1189652 4552871 ~ 4559768 (-)
G172920 NA other upstream 1407598 4770817 ~ 4771303 (-)
odf2a LOC103374699 other upstream 1483060 4846279 ~ 4897357 (-)

Expression


Co-expression Network