G172468


Basic Information

Item Value
gene id G172468
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3460345 ~ 3463100 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU233656
tttacagtgtaaagTAACAAAACCAAATAAAACAGCCAACCTGAAAATCCTAAACAAAATGTATATGAGGTATAATCCCCTCCTAGCTGTGCTGTTATGAAGCTTAATGCACTCATGCTTGTGTACCTACAGTATATTAAAATAGTGCTCACTGTGGAAATGAGGTCTACTGTTGCCATGGTACTTGCAGTTTAGTGTACATtaagctagggctgcacaattaatcgaatatGAATAGAGATCCTGatttatgaaaatgatcgttTAAAATGCATTGCTGCCTACAGCAAATCAAGCGCTTCCTAAACAGCATGAAGGACTCAGCCAGTAGCGTGCTAGCAGCGGCATTACgcactagcctggctccgccctcctacgtacttccgctcaattttcattttccttcagtactccgtctgggtttgcggtatattttGGGGTTTTCTCTGGCCAATCTTTACctgtccaatcagcgaacagagagagtggctgagaacgatgacgttgaggttgtgtgctagtttgagttgttgttccgtaatggcggcggagaaagatgcgagcgaagccattcggtccgttgtggcaacgctgccaaaaatccagaagttaaagcccgagcaagaacaatctttgctgagttgtgttgggggccatgatgttgtggccctcctccccacggggttcaggaaaggtttgattttccagctcgctccgttagtggtgagggagttggctaaggctaacgctagcgaagctaagccgacgtcacgaccaaacgttagcgattagttatggcagatccagagtggctctgggcagatccaatagttttaaacttcaacagagtacccgccttcaaggaagttaacacttgtcaatggagagaggccagactctcttgacaaatgaaatggaccagagtctggtaggaccaggctaattaTGCAGGGCCGTTCTGTTAAATCTCCTAAAAATGACACCAGGCTGCGACAGTATAACAACACAGACTTTTGCACACATCAGACTGCTCGGTTATAACTTGCCTCAGCCAGACATTTATCAGTTATCGGCTGAAATGACGGCATAGAACTGTGTTACACTATAAATTAGCCTAGCGGCTAGCAGACGTTTAGCTAGTGGCTTAATCAAGACATAACACCACGGTGTATGACACCCTGCATGTACATTATTCTCAGTTTAAAATAGttgaaataaagcagctaatgttggtagtaatgtaatgtaattgagACAGGGACAGTGTACAATTAaacattaaccttgtataaaaacaaggagagatgcattgtaCCAGATTTTAGCACAATTGCTATATcccgtagtccctgggcaggtatgaGAGCAACAAGTTAGTGGCGCAccggccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtctgtggaGAGAAACGTGACAGTAGATGACAGTAAATACTCTCATACTAACCTGAGATGCACTGCAAAACGTGTCTTTTGATTTTATTAAATGCATTCACTTTTTAAGGATTCTGTTATTCTACAGTATTAAAGAAAaccaaaaaggaaaagaaaaaactaataCCTACCTGAGGAACAAATGTCTGAATAATCCAGCCCTACTTATTTGGATGCAAAGATTTGTACATTAGCAGAtgcaaatcagaatcagaattattggccaagtatactaacatacacaaggaatttgactttggtaggtgttaactctctatacattcaacaaatagacatgaAGAAGTAACATAcggtacaatagagacaacaatatacatataggcacatatcaacataatatacaaaattacaaatatacaaataagacataatatcaagacaagtacacatggagtgggatgtaaagtgcaaaaagtaGTAGTGAAAAGTAGTGTGCAAGAtacatattggaatgataagcATGTAATGTGTAGAGAAGTGTGTGAGTGGTCAAAGTGGTGATGACCCCACTTATCAAGTGTTCAGGCAAATATAGCACAACATGGAAGTGAAAGAAGGGCAatgtttattaaaatgttaaagtgcaatatataaaataaaatattttgccGCAGAAATCAATGaataatcgtgttaaataatcgtgatctcaatattgatcaaaataatcgtgattttcATTTTGGCGTAATTGtgtaattgtgcagccctaccttAAACTCTGATTTAAAAcagttgttaaactgttgacaTGAGCTATGTTTGAAATGTCCATATAAGATGTTAACAGACACctgccagccaatcagagagcagtaTGTTCAATTGCCATGTTATAATGAAAACACTCGACAGTGTGGTACTTTTGACAATGCCTTATTGTTTGATAACTGCACATTTTGTTTGGGATTTTCTTACTAATCTCAAGTTATGTGTGTGAACACACCTTATACTTTATATGGTGAAACAATTACAGACTGGAATATCTTAGTACAATAGAtattttcacacattttcaACCACGAAGCTAGTGACATGTCTCTTTTTTTGGATTCTGTTTTGTCCTGACTTTCCTGTCCAGTCAGCAGGTCTGTATCATGTTACAGTTTGTAAATTGCAGCTGTCAGATAGAAAAACACATAActgcaaataaagaaaatgaatcCGTTTTTTGTGAGTGACAAATAATACAAACATTACATCAGAGC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU233656 True 2714 lncRNA 0.39 2 3460345 3463100

Neighbor

gene id symbol gene type direction distance location
LOC120545955 NA coding downstream 178393 3277549 ~ 3281952 (-)
mbd2 mbd2,LOC100708236,LOC103373628 coding downstream 213455 3168626 ~ 3246890 (-)
dcc dcc,LOC102787302 coding downstream 652881 2469175 ~ 2807464 (-)
dcp2 dcp2 coding downstream 1180534 2253897 ~ 2279811 (-)
LOC120545833 NA coding downstream 1207390 2179488 ~ 2252955 (-)
june LOC100707786,LOC102781123,LOC101463670,LOC102205300,LOC105936581 coding upstream 802 3463902 ~ 3475242 (-)
LOC120544885 NA coding upstream 20625 3483725 ~ 3505303 (-)
LOC120546063 NA coding upstream 89338 3552438 ~ 3582804 (-)
crata LOC100707255,LOC102203594,LOC102307831 coding upstream 137438 3600538 ~ 3630312 (-)
ier5l ier5l,LOC102782588 coding upstream 220443 3683543 ~ 3685682 (-)
G172444 NA non-coding downstream 89547 3363517 ~ 3370798 (-)
G172443 NA non-coding downstream 97126 3362747 ~ 3363219 (-)
G172439 NA non-coding downstream 101825 3358125 ~ 3358520 (-)
G172432 NA non-coding downstream 133111 3325766 ~ 3327234 (-)
LOC120545949 NA non-coding downstream 292989 3159271 ~ 3167356 (-)
G172504 NA non-coding upstream 54909 3518009 ~ 3518953 (-)
G172507 NA non-coding upstream 77175 3540275 ~ 3547689 (-)
G172549 NA non-coding upstream 204828 3667928 ~ 3668180 (-)
G172553 NA non-coding upstream 219251 3682351 ~ 3683384 (-)
G172556 NA non-coding upstream 244484 3707584 ~ 3707824 (-)
G172311 NA other downstream 475085 2984822 ~ 2985260 (-)
G172032 NA other downstream 1858189 1596516 ~ 1602156 (-)
G171868 NA other downstream 2289556 1170203 ~ 1170789 (-)
megf10 megf10 other downstream 2313758 1040798 ~ 1146587 (-)
prrc1 prrc1 other downstream 2452157 994437 ~ 1008188 (-)
G172620 NA other upstream 423488 3886588 ~ 3943831 (-)
cdk9 cdk9 other upstream 676066 4139166 ~ 4147813 (-)
dpm2 dpm2 other upstream 1089771 4552871 ~ 4559768 (-)
G172920 NA other upstream 1307717 4770817 ~ 4771303 (-)
odf2a LOC103374699 other upstream 1383179 4846279 ~ 4897357 (-)

Expression


Co-expression Network