cdk9 (cdk9)


Basic Information

Item Value
gene id cdk9
gene name cdk9
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 4139166 ~ 4147813 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU233934
GAAGAAGAAAGGTCGCAGACTGAACGGCACAGGGATGCAGcgagacaaaacaagcaacgcCGGTGGGGCTGAAAAGCCCGACCGGGAGGCCGCCATAATGTCGAAATACTACGATGGAGTTGAATTTCCTTTCTGTGACGAGTTCTCCAAATAtgaaaaaatggcaaaaatagGACAAGGAACTTTTGGTTCCCAATCACAGCTCTGAGAGAGATCAAGATCCTGCAGCTACTCAAACATGAGAATGTGGTCAATCTGATTGAGATCTGCAGAACCAAAGcTACTCAGTTCAACAGATACAAAGGCAGCATCTACCTGGTGTTTGACTTCTGTGAGCATGACCTGGCTGGGCTGCTCAGCAATGCCAATGTAAAATTCACCCTGGCAGAGATCAAGAAGGTCATGCAGATGCTGCTCAATGGATTGTACTACATCCACAGAAACAAGATCCTTCACAGAGATATGAAGGCGGCCAACGTGCTCATCACCAGAGACGGTGTCCTGAAGCTGGCTGACTTTGGTTTGGCTCGAGCCTTTAGCCTGGCTAAAAACAGCCAGGGGAACCGCTACACTAACCGCGTGGTCACACTCTGGTACAGACCTCCAGAGCTGCTGCTAGGTGAGCGAGACTACGGCCCCCCCATTGACCTGTGGGGAGCAGGCTGCATCATGGCAGAGATGTGGACAAGAAGTCCCATAATGCAAGGCAACACTGAGCAGCATCAGCTCACTCTCATCAGCCAGCTCTGTGGCTCCATCACTGCTGAGGT
>XM_039780457.1
tgcctgCGAGAGGCAGAAATGTGCCGCAAGGATTTTGGTCTGCCGGAAATCAACCAAGGAAGAAGAAAGGTCGCAGACTGAACGGCACAGGGATGCAGcgagacaaaacaagcaacgcCGGTGGGGCTGAAAAGCCCGACCGGGAGGCCGCCATAATGTCGAAATACTACGATGGAGTTGAATTTCCTTTCTGTGACGAGTTCTCCAAATAtgaaaaaatggcaaaaatagGACAAGGAACTTTTGGGGAGGTGTTCAAAGCAAAGCACAGACAGACTGGGAAGAAGGTCGCGCTGAAGAAAGTTTTGATGGAAAATGAGAAAGAAGGGTTCCCAATCACAGCTCTGAGAGAGATCAAGATCCTGCAGCTACTCAAACATGAGAATGTGGTCAATCTGATTGAGATCTGCAGAACCAAAGcTACTCAGTTCAACAGATACAAAGGCAGCATCTACCTGGTGTTTGACTTCTGTGAGCATGACCTGGCTGGGCTGCTCAGCAATGCCAATGTAAAATTCACCCTGGCAGAGATCAAGAAGGTCATGCAGATGCTGCTCAATGGATTGTACTACATCCACAGAAACAAGATCCTTCACAGAGATATGAAGGCGGCCAACGTGCTCATCACCAGAGACGGTGTCCTGAAGCTGGCTGACTTTGGTTTGGCTCGAGCCTTTAGCCTGGCTAAAAACAGCCAGGGGAACCGCTACACTAACCGCGTGGTCACACTCTGGTACAGACCTCCAGAGCTGCTGCTAGGTGAGCGAGACTACGGCCCCCCCATTGACCTGTGGGGAGCAGGCTGCATCATGGCAGAGATGTGGACAAGAAGTCCCATAATGCAAGGCAACACTGAGCAGCATCAGCTCACTCTCATCAGCCAGCTCTGTGGCTCCATCACTGCTGAGGTAAGCCATACCCAGAACCCGTACGCCCTGGATCTGATCGATAAACTCCTGGTCCTGGACCCGGCACAGCGCATTGACAGCGACGACGCGCTCAACCACGACTTCTTCTGGTCCGACCCCATGCCCTCAGACCTGAAGAACATGCTCTCCACTCACAACACCTCCATGTTTGAATATCTGGCCCCGCCCAGACGGAGAGGCCACATGCCGCAGCAGCCGCCCAATCAGAACAGAAACCCAGCCACCACCAGTCAGACAGAGTTTGATCGAGTGTTTTAGTGGTTGGAGAAGTTTATGGACCGTTGTTTGCCTAGTTGGACTTCTTATTTAGTCTAAAATGacaactttttttccccaaccgGTCTTATATTGAGGAAAAGCTACACATTCCTTTTTTGGTTGAGGTTTGGCAGACATTACCTGGAGATCTATACAGTTTCTTTGTAGGATCACTGCTCTGCACAGGAGGCAAGTGGTTTGGGTTGACCAGGGACAGGACTGTATGTTCTAAGTTATGCAGAGGCCTTTGCAAGCCAAGTTATTAACTTTGTATGCTTTTTCTCCAGGGGATAATGAAGAGACTGATGTTAACATGGCTTGGGTGTGTTCACTATGTTGCCTTGATTAAACAAGGCCCCTGTtagttttaatttgatttaatagTTTGATTCATTTGTGAGTGAGTCtggcattttagttttttacattTCCACACTAttataattgtttaaaaaagaaatagctATATTTAAAGGCTGTGCAGTATTTTTGGTGATAACCATTTTACACGATACCACAAACATTTCTAAACACATAGCCAAAAGTGACAAACCCAAAATAAAGTGGTTATTACGCAA

Function

symbol description
cdk9 Predicted to enable ATP binding activity and RNA polymerase II CTD heptapeptide repeat kinase activity. Acts upstream of or within several processes, including cardiac muscle tissue regeneration; inflammatory response to wounding; and regulation of cardiac muscle cell proliferation. Predicted to be located in PML body and cytoplasm. Orthologous to human CDK9 (cyclin dependent kinase 9).

NR:

description
PREDICTED: cyclin-dependent kinase 9 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02211 CDK9; cyclin-dependent kinase 9

RNA

RNA id representative length rna type GC content exon number start site end site
TU233934 False 770 TUCP 0.51 6 4141853 4147755
XM_039780457.1 True 1765 mRNA 0.47 8 4139166 4147813

Neighbor

gene id symbol gene type direction distance location
lrsam1 lrsam1,LOC102783639 coding downstream 207484 3890688 ~ 3931682 (-)
ndor1 ndor1 coding downstream 299346 3820109 ~ 3839820 (-)
ier5l ier5l,LOC102782588 coding downstream 453484 3683543 ~ 3685682 (-)
crata LOC100707255,LOC102203594,LOC102307831 coding downstream 508854 3600538 ~ 3630312 (-)
LOC120546063 NA coding downstream 556362 3552438 ~ 3582804 (-)
nadk2 nadk2 coding upstream 47933 4195746 ~ 4207317 (-)
dqx1 dqx1 coding upstream 123171 4270984 ~ 4306484 (-)
thnsl2 thnsl2,LOC102788563 coding upstream 160163 4307976 ~ 4332155 (-)
tbc1d13 tbc1d13,LOC102788004 coding upstream 192381 4340194 ~ 4357254 (-)
LOC120546073 NA coding upstream 318127 4465940 ~ 4471158 (-)
G172638 NA non-coding downstream 81528 4057437 ~ 4057638 (-)
G172632 NA non-coding downstream 110542 4028386 ~ 4028624 (-)
G172627 NA non-coding downstream 162220 3972610 ~ 3976946 (-)
G172600 NA non-coding downstream 259847 3818907 ~ 3879319 (-)
LOC120545877 NA non-coding downstream 362024 3776110 ~ 3777142 (-)
G172743 NA non-coding upstream 188276 4336089 ~ 4339898 (-)
G172755 NA non-coding upstream 253998 4401811 ~ 4402024 (-)
G172768 NA non-coding upstream 317014 4464827 ~ 4465835 (-)
G172777 NA non-coding upstream 326426 4474239 ~ 4474861 (-)
G172787 NA non-coding upstream 360426 4508239 ~ 4509083 (-)
G172620 NA other downstream 195335 3886588 ~ 3943831 (-)
G172311 NA other downstream 1153906 2984822 ~ 2985260 (-)
G172032 NA other downstream 2537010 1596516 ~ 1602156 (-)
G171868 NA other downstream 2968377 1170203 ~ 1170789 (-)
megf10 megf10 other downstream 2992579 1040798 ~ 1146587 (-)
dpm2 dpm2 other upstream 405058 4552871 ~ 4559768 (-)
G172920 NA other upstream 623004 4770817 ~ 4771303 (-)
odf2a LOC103374699 other upstream 698466 4846279 ~ 4897357 (-)
LOC120545230 NA other upstream 1248820 5396633 ~ 5400678 (-)
LOC120544971 NA other upstream 2220494 6368307 ~ 6374489 (-)

Expression


Co-expression Network