cntfr (cntfr,LOC108232720,LOC103473535)


Basic Information

Item Value
gene id cntfr
gene name cntfr,LOC108232720,LOC103473535
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 12646286 ~ 12918560 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU236208
TGTAACTTTAACATTGAacaaaaagtttattatttaataataataataataataataatgtatgtaGTAGCAGTAGAATGTTGTAACCTGTACCTGGGGTCTTTTT
>XM_039780624.1
cataaacagagagagagagagagagagaggggggttaTACAGTGTAGAGGATAACAACAGTGAGAGAAGTAAAGAAATGAGGGAGTTTGACGAGTAGGAACGAAACGGCAAaggatagagaaaaaaaaaaaggccactgAAAGAGCCGTAACAGTGATAGGAGATAGAGAGACTCTGAGAGAGGACAGGAAGCAGCTGTCCCTCCATCTCTTCCATGGTGTTGTAGGCGTCTATGGGTCTGTCAGTCAATCAGGAGGAGAAGGCGGACTCCCTCACTCGCCGCCGGCTCGGTGTCTCTTGCACGCGCTCACGCTGATgactttgctgtgtgtgtgtccacagatGGCCAACCTTGTGACATCGCTGTGCTGTGTAGTTCTGGCCGCGGTGGTGGTAGCCTACGCTCAGAGACGCAGTCAGCTTGTTGCGAGGAACCAGTATGAGCGAATGGGCAGTGATGTCACCATGCAGTGCGGCTCCCTGGACAATGACGCATCGGTGTCATGGAAGGTGAACGGGACCGATGTGAAGGCTCAGCATCATCTAGAGGGTCCCAGACTGGTGCTGAACGAAGTGGACCTGGGCCACAACGGACTCTACAGCTGCTTCCAGAACCCTCACGGAGAGAGGCGGGACACCATCTACCTCCACATCGGCATTCCCCCTCGGGATCCCACAGTCACCTGCCGGTCCAACACCTACCCTAAAGGCTTCTACTGCAGCTGGCACCAGCTGCACCCCACCTACATCCCCACCACCTTTGAAGTGGACGTACAaCATAACCAGCGTTCACTGGAGGTGCAGAAAGATCCGGACCACAAGAACCGCTGCCGTGTACGTTTTCCTGAGGTCTTCTCCAGCTACCCGTACAAAGTCAACGTGACAGCAGTCAACGCCTTGGGGAAAGCCTCTACCACCATTTCCTTTGAAGAGTCCAGTATAGTCAAACCAGACCCGCCGGAGCGAGTGACGGCGACCCCGATCCGTTTCAACGCCCGGAGGCTGGAGGTGTCCTGGCAGAGCCCCGCCACCTGGCCTGACATCGACAACTTCCCTCTGAAATACTTCCTTCGATACCGGCCACTCATCCGAGAGCAGTGGCAGCATGTGGAGCTATCTGACAGCACCTCCCACACCATCACCGATGCCTATGCTGGGAAGGAATACATCATCCAGGTGGCTGCCAAGGacacagagattggaacatggAGTGACTGGAGTGTCGCCGTCCATGCTACACCCTGGATTGAAGATCCTCTGCCAATCACTTCCACAACTGAAGTAGACTTTCCTACCGAGACTAAGACCTCCCCCATACCATCCTCCAACGCACCACAAAAGGCTGAACCTCCAGTGGGCAGAGCTGCCAGGCTCCTCACATTTTTCTCTCCTTTGCTGTTAggaatgctgctgctgtttatgtGATGTAAATGTCTTATTCCTGAAGGGagtaggaggaggaagaggaggaggaggaggaggaggaggaggatgatcttttttctattttgcACATGTTTCAAGGATACAGTGCATCGATCATTTCTGTCCATCACACAGTTACTCACCGAGATTACTTAGACATGAAACCAGACGATGATAATGCGGTTcagcatttttttaataatggtGACAAAGAAATTCTTCAGAGGAACTTTTGAAAGCGGCATCATcgacaacagcagcaacaagagCAGCACCAACCACAACAGCAGCGGTGATATCAGCATAAACAGTCTTATATTTCCCCCTGGTGGCTTCCATGGGCCAAAGCAGACTTTGTTTGGCAGACAACAGATGGTTTGGGAATCTCCTCTTCAGAGCAAGAAAAGCTTCAAAATCCTCattacctttttttgtttttgtttttttattgatcgATAGtcttcattttcactttcttgaAATTGCAGCACCGTAcagacaaacgcacacacatatatagagcatccgtgtgtgtgtttgtgtgtatagtCCCCGTAGCAGTTCCCCATACAGCTAAATCATCATGCCAAAGACTCaacttcaccccccccccctccgccCCAAACAAAATGATTCCCAAACAATTCACTAAGCTTCCTGAAGCCTGTGTCTGCCTTCGTCGTGGGTGAAAAAGCCCAGAAAGTtatgtgcgtctgtgtgtgtctgcacaaCACCTGATTGATGCCGACTCAAATCGTATACGAATGATACTTGGGACAAGTCTGAGGAACCCCCTACAGCTCCTGTTTGGTAACAAAGAAGTCACAAAAATACTCAATCAGACTCTGAATCTGTCAACTCCCAACGACTGAATCAAAATGACGGAgcaagtgttttgttttgtttttcgaTATGAGGACTAACACTTTGAAGAATTCAGTAAGGGTAGTCTGGCTTATTTAGACAATTAGCTTTATACTCTGCTTTCAGCGACTGGCAACGAGGACCTGGattgtaaaacaataaataaagtggatttGAGACTGAACACTTCATTGCCCACCCATTTGTTTTGGTTCGACGACGACAAAGTTGGTTATTGAAACGTTGGAACGAGCTACGTTGGTTTTCCATTCTGCTCTGTGTTGTGAATTACGATTACACGAAACCGTTTGCTTTCCAAATTCTGACGCCTTTACAAACGTTTTGCAGTTTACACTTCAGTAGCCAATATCATCAGTTACTATTATGTTATTCAAAGGAATattgatgtgttttattgtatttttttctatcttatggacaaaaaaatacaaacacacatataggattttagtttgttttttttcagacattCATAATGGCTTAATTTTCCTTGATCCTATTTTGTAAACTATGATATGTAACTTTAACATTGAacaaaaagtttattatttaataataataataataataataatgtatgtaGTAGCAGTAGAATGTTGTAACCTGTACCTGGGGTCTTTTTTATAGATGTATATACAATGACAGGTTTCAACCATtaaatgtgaccatttcacaatgaATGATGACACA
>XM_039780625.1
AGCAGTgcgagacacagagacagacgcacacgttctctctctctccttctctctctctctttcacacacacacgcatgcacacacacacatgcgtgcAGGCAACTTTCCTCTTATCGGACTGACACAACGCACACGCCGGGATAAGACACACTCCCCTTGCGACAGTGGAGAAGAGGATAAGGAGTGACagatcaggaaaaaaaaagaaatacagaaaaagaAGAGGTTCCCAGGTGAAGAGGAGGATCGTGCTGACGTTTCGTCCTGTCCAAGatGGCCAACCTTGTGACATCGCTGTGCTGTGTAGTTCTGGCCGCGGTGGTGGTAGCCTACGCTCAGAGACGCAGTCAGCTTGTTGCGAGGAACCAGTATGAGCGAATGGGCAGTGATGTCACCATGCAGTGCGGCTCCCTGGACAATGACGCATCGGTGTCATGGAAGGTGAACGGGACCGATGTGAAGGCTCAGCATCATCTAGAGGGTCCCAGACTGGTGCTGAACGAAGTGGACCTGGGCCACAACGGACTCTACAGCTGCTTCCAGAACCCTCACGGAGAGAGGCGGGACACCATCTACCTCCACATCGGCATTCCCCCTCGGGATCCCACAGTCACCTGCCGGTCCAACACCTACCCTAAAGGCTTCTACTGCAGCTGGCACCAGCTGCACCCCACCTACATCCCCACCACCTTTGAAGTGGACGTACAaCATAACCAGCGTTCACTGGAGGTGCAGAAAGATCCGGACCACAAGAACCGCTGCCGTGTACGTTTTCCTGAGGTCTTCTCCAGCTACCCGTACAAAGTCAACGTGACAGCAGTCAACGCCTTGGGGAAAGCCTCTACCACCATTTCCTTTGAAGAGTCCAGTATAGTCAAACCAGACCCGCCGGAGCGAGTGACGGCGACCCCGATCCGTTTCAACGCCCGGAGGCTGGAGGTGTCCTGGCAGAGCCCCGCCACCTGGCCTGACATCGACAACTTCCCTCTGAAATACTTCCTTCGATACCGGCCACTCATCCGAGAGCAGTGGCAGCATGTGGAGCTATCTGACAGCACCTCCCACACCATCACCGATGCCTATGCTGGGAAGGAATACATCATCCAGGTGGCTGCCAAGGacacagagattggaacatggAGTGACTGGAGTGTCGCCGTCCATGCTACACCCTGGATTGAAGATCCTCTGCCAATCACTTCCACAACTGAAGTAGACTTTCCTACCGAGACTAAGACCTCCCCCATACCATCCTCCAACGCACCACAAAAGGCTGAACCTCCAGTGGGCAGAGCTGCCAGGCTCCTCACATTTTTCTCTCCTTTGCTGTTAggaatgctgctgctgtttatgtGATGTAAATGTCTTATTCCTGAAGGGagtaggaggaggaagaggaggaggaggaggaggaggaggaggatgatcttttttctattttgcACATGTTTCAAGGATACAGTGCATCGATCATTTCTGTCCATCACACAGTTACTCACCGAGATTACTTAGACATGAAACCAGACGATGATAATGCGGTTcagcatttttttaataatggtGACAAAGAAATTCTTCAGAGGAACTTTTGAAAGCGGCATCATcgacaacagcagcaacaagagCAGCACCAACCACAACAGCAGCGGTGATATCAGCATAAACAGTCTTATATTTCCCCCTGGTGGCTTCCATGGGCCAAAGCAGACTTTGTTTGGCAGACAACAGATGGTTTGGGAATCTCCTCTTCAGAGCAAGAAAAGCTTCAAAATCCTCattacctttttttgtttttgtttttttattgatcgATAGtcttcattttcactttcttgaAATTGCAGCACCGTAcagacaaacgcacacacatatatagagcatccgtgtgtgtgtttgtgtgtatagtCCCCGTAGCAGTTCCCCATACAGCTAAATCATCATGCCAAAGACTCaacttcaccccccccccctccgccCCAAACAAAATGATTCCCAAACAATTCACTAAGCTTCCTGAAGCCTGTGTCTGCCTTCGTCGTGGGTGAAAAAGCCCAGAAAGTtatgtgcgtctgtgtgtgtctgcacaaCACCTGATTGATGCCGACTCAAATCGTATACGAATGATACTTGGGACAAGTCTGAGGAACCCCCTACAGCTCCTGTTTGGTAACAAAGAAGTCACAAAAATACTCAATCAGACTCTGAATCTGTCAACTCCCAACGACTGAATCAAAATGACGGAgcaagtgttttgttttgtttttcgaTATGAGGACTAACACTTTGAAGAATTCAGTAAGGGTAGTCTGGCTTATTTAGACAATTAGCTTTATACTCTGCTTTCAGCGACTGGCAACGAGGACCTGGattgtaaaacaataaataaagtggatttGAGACTGAACACTTCATTGCCCACCCATTTGTTTTGGTTCGACGACGACAAAGTTGGTTATTGAAACGTTGGAACGAGCTACGTTGGTTTTCCATTCTGCTCTGTGTTGTGAATTACGATTACACGAAACCGTTTGCTTTCCAAATTCTGACGCCTTTACAAACGTTTTGCAGTTTACACTTCAGTAGCCAATATCATCAGTTACTATTATGTTATTCAAAGGAATattgatgtgttttattgtatttttttctatcttatggacaaaaaaatacaaacacacatataggattttagtttgttttttttcagacattCATAATGGCTTAATTTTCCTTGATCCTATTTTGTAAACTATGATATGTAACTTTAACATTGAacaaaaagtttattatttaataataataataataataataatgtatgtaGTAGCAGTAGAATGTTGTAACCTGTACCTGGGGTCTTTTTTATAGATGTATATACAATGACAGGTTTCAACCATtaaatgtgaccatttcacaatgaATGATGACACA

Function

symbol description
cntfr Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within positive regulation of axon regeneration. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including central nervous system; cranial ganglion; hindbrain neural plate; immature eye; and pectoral fin musculature. Orthologous to human CNTFR (ciliary neurotrophic factor receptor).

NR:

description
PREDICTED: ciliary neurotrophic factor receptor subunit alpha isoform X1

GO: NA

KEGG:

id description
K05059 CNTFR; ciliary neurotrophic factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU236208 False 106 lncRNA 0.24 1 12646354 12646459
XM_039780624.1 True 3000 mRNA 0.46 9 12646286 12804847
XM_039780625.1 False 2932 mRNA 0.46 11 12646286 12918560

Neighbor

gene id symbol gene type direction distance location
si:busm1-57f23.1 NA coding downstream 148334 12490251 ~ 12497952 (-)
musk musk coding downstream 179121 12422834 ~ 12467165 (-)
stbd1 NA coding downstream 327491 12312236 ~ 12318795 (-)
LOC120546050 stoml2 coding downstream 461803 12175383 ~ 12184483 (-)
pigo pigo coding downstream 472902 12162293 ~ 12173384 (-)
galt galt,LOC102780609 coding upstream 436628 13355188 ~ 13386974 (-)
hdhd2 hdhd2 coding upstream 513049 13431609 ~ 13439708 (-)
skor2 skor2 coding upstream 526146 13444706 ~ 13457895 (-)
LOC120545744 hspb9 coding upstream 694720 13613280 ~ 13614293 (-)
LOC120545595 epha5,LOC102777475,LOC102204755,LOC102304993 coding upstream 713541 13632101 ~ 13706928 (-)
G174482 NA non-coding downstream 18859 12627207 ~ 12627427 (-)
G174481 NA non-coding downstream 76715 12565702 ~ 12569571 (-)
G174443 lpar1 non-coding downstream 229352 12409324 ~ 12416934 (-)
G174430 NA non-coding downstream 303998 12287414 ~ 12342288 (-)
G174403 unc13b,LOC102798935 non-coding downstream 391011 12254818 ~ 12255275 (-)
G174500 NA non-coding upstream 61266 12979826 ~ 12980285 (-)
G174501 NA non-coding upstream 93624 13012184 ~ 13012817 (-)
G174507 NA non-coding upstream 145184 13063744 ~ 13063943 (-)
LOC120546049 NA non-coding upstream 198920 13117480 ~ 13134012 (-)
G174512 NA non-coding upstream 352896 13271456 ~ 13277068 (-)
tmem267 tmem267 other downstream 8792 12631225 ~ 12637494 (-)
G174442 lpar1 other downstream 254802 12390555 ~ 12391484 (-)
G174439 NA other downstream 288396 12356928 ~ 12357890 (-)
LOC120545042 NA other downstream 1481792 11153767 ~ 11164494 (-)
adra1ab LOC104947653,LOC100705829 other downstream 2250542 10378956 ~ 10395744 (-)
ier3ip1 ier3ip1,LOC106633120,LOC102779563,LOC104954869 other upstream 522720 13441280 ~ 13444079 (-)
smad2 smad2,LOC102778427 other upstream 665057 13583617 ~ 13606140 (-)
G174799 dusp4,LOC103390320,LOC107396907,LOC107092021,LOC103473566,LOC102218109 other upstream 1561902 14480462 ~ 14483417 (-)
G174827 NA other upstream 1666139 14584699 ~ 14589020 (-)
G175000 arpc3 other upstream 2732177 15650737 ~ 15654486 (-)

Expression


Co-expression Network