smad2 (smad2,LOC102778427)


Basic Information

Item Value
gene id smad2
gene name smad2,LOC102778427
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 13583617 ~ 13606140 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU236287
CTGCATCTCAACGGCCCCCTCCAGTGGTTGGATAAGGTGCTGACCCAGATGGGTTCACCATCAGTGCGCTGCTCCAGCATGTCCTAAACGAGGTCCTGCTGCTGCCTACGCAAAGTCAGTCTGATTTTTCACAACATTTGTCCTTGCCCGTATGTCCTAAGGAAGACCACAATGCAGTCTTAAATTGATGCACCACCAACATTATCATtttaagaaagagagagagagagagaagaaaaagtaacAACAAAGATTACACAATGCACCTGGAGGACGGGAGAACAACATGCTGATAAGACAATAGTGGGATGTTAACAATGATGTCACAGTGGGCCTGATCATCCTTTCTGGCTCCGTTGGATTAATGTTAGGATGACATTCCAGTAATCATGGATCTAGTAATTGAAATCTTCCtgcaatatataaaaatgtcgTAATGGACCAGACTGCATTCATGTTTTTTGGTATTTGACTGAGGCTCTGATCCAGAAACGGCTTCGCTGTCCTGCTAAGTGACACGTCAGTGGCCGTTTCGGGGACGCGCGTGTGACCTCCTAGCTACAGGGCTGTCTCTGTACAACCACTAGTCCACCTTACTGCTTCACTACCTACCGGCCGCGGCGCAACTTTGATTCAGCgtcaggatttattttttttttgtctacacAAGGTTGACCAGCAGTAGTACTGCCACTCACTGGCTCACGTTCAACCAAAGTCAGCTCCACGCCTGGACATGAattctttttttggttttgatgaCCGAACTTCCATTCTCTTTTCATCTGAAATTTCCACTCTTCTTCTAAATCAGGCCTGTGCCGTTAGCTCAGACCTGCCGACGCTGGAGTGATGGACTTCAGCTCTGAAAGGGGTGACCACCGGGGAGAGCATGTTGATGTCTATACTTAATATTCCATACCCTGTCTTCACATGgtcaaatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacatacatacatacatacatatacagtatctcacaaaagtgagtacacccctcacattttagtaaatatttcattatatcttttaattcattaattttaacactgaagaaatgacactttgctacaatgtaaagtattaagtttacagctcgtataacagtgtaaatgtgcagtcccctcaaagtaactcaacacacagccattaatgtctaaaccgctggcaacaaaagacAGTACACCCCtgtgttaaattcccatagaggcaggcagatttttattgttaaaggccagttatttcatggatccaggatactatgcatcctgataaagttcccttggcctttggaattaaaatagccccacatcatcatatgcccttcaccatacctagagattggcatggggtatgGGGCATGTTTTGAGTTTGGATCAGATCTGAAACATCAGCAAGTAGTAAGTAATTATCAGTGCAAATGTCCCTCCTCTTGAACTTCATACaatcttttaaactttttttttcagccgGTAATAAAGG
>XM_039780800.1
TTGAGCTTTGAAAGAGGGGGCCATCATCCCGGCGGCTCGGAGGtgaaaaaatacagtttaaagtCTCTCTGGAtgcatttaaaatgaataaGCAGGCTTTTCTGACAGGCACCTGAATGCCCGTCCAGCGCCCTTTCATTTCCTCGCTGGGTTTCTTTGGATGTACTCCCTTGGCATTTTGTGCTGTCCATCTGATGTTTCCCAAGACTCCTCAAGACCAATGTCTTAGTTCTGACTAgacattcattaaaaaaaaaaatactttcatgCATTCAGTATACATAgcttaaaaaagaaatctccAGCAGGAATTCCACCAACCCATCGCCTGTATCGCCCTCCTTCCCCTCTCCCTTTTTCTCTTCACGTCAGATTAAGAGGGGCACCGAAACCCACTTAAGACGCACAGGCGCACACATAACGTGCACAGGCCAGCATGTCCTCCATCCTTCCCTTCACTCCCCCGGTAGTGAAGCGCCTCCTGGGATGGAAGAAGACTCCGGCAGGGAGTGGGGGAGCCGGAGGAGGCATCGGAGGAGTTGGGGAGCAGAACGGAGGGGGGCAGGAGGACAAGTGgtgtgaaaaagctgtaaagAGCTTggtgaagaagctgaagaagacTGGGCAGCTGGATGAGCTAGAGAAAGCCATCAGCACGCAGAACAGCAACACAAAGTGTGTGACCATACCCAGGTCACTGGACGGGCGTCTTCAGGTGTCCCATCGCAAGGGCCTGCCCCACGTCATCTACTGCCGCCTGTGGAGATGGCCGGACCTCCACAGCCACCATGAGCTCAGGGCCATCGACTCCTGCCAGTTCGCCTTCAACCTCAAAAAGGATGAAGTGTGTGTCAATCCCTACCATTACCAGAGAGTGGAGACGCCGGTGCTGCCTCCGGTGTTGGTGCCACGCCACACAGAGATCCTGACAGAGCTTCCTCCTCTAGACGACTTTACAAACTCCATCCCCGAAAACACCAACTTCCCCGCCGGCATAGACCCTCCTAATAACTATATACCAGaGACTCCTCCACCTGGCTACATCAGTGAAGATGGAGAGACCAGCGACCAGCAGATGAATCAAAGTATGGAATCAGGCTCACCAGCAGAAATGTCACCCGGCACCCTATCACCTGTCAGTCATGCTCTGGaccTTCAGCCAGTTACCTACAGTGAACCAGCTTTCTGGTGCTCGATAGCCTACTATGAGTTAAACCAGCGGGTCGGAGAGACGTTCCACGCCTCGCAGCCATCGCTGACAGTCGATGGCTTCACCGACCCCTCCAACTCTGAACGCTTCTGTCTAGGGCTTCTCAGCAATGTTAACAGGAACGCAACTGTTGAAATGACAAGGAGACAcatagGTCGCGGTGTGAGGTTGTATTACATCGGAGGGGAGGTGTTCGCCGAGTGCCTCAGCGACAGTGCCATTTTTGTCCAGAGTCCCAACTGCAACCAGCGATATGGCTGGCACCCTGCCACAGTCTGCAAGATACCGCCAGgCTGCAATCTGAAGATTTTTAACAACCAGGAGTTTGCTGCACTGCTGGCCCAGTCAGTCAATCAGGGTTTTGAGGCAGTCTACCAACTAACCAGGATGTGCACCATCAGAATGAGCTTCGTCAAGGGCTGGGGAGCGGAGTACAGACGTCAGACCGTAACCAGCACTCCCTGTTGGATTGAGCTGCATCTCAACGGCCCCCTCCAGTGGTTGGATAAGGTGCTGACCCAGATGGGTTCACCATCAGTGCGCTGCTCCAGCATGTCCTAAACGAGGTCCTGCTGCTGCCTACGCAAAGTCAGTCTGATTTTTCACAACATTTGTCCTTGCCCGTATGTCCTAAGGAAGACCACAATGCAGTCTTAAATTGATGCACCACCAACATTATCATtttaagaaagagagagagagagagaagaaaaagtaacAACAAAGATTACACAATGCACCTGGAGGACGGGAGAACAACATGCTGATAAGACAATAGTGGGATGTTAACAATGATGTCACAGTGGGCCTGATCATCCTTTCTGGCTCCGTTGGATTAATGTTAGGATGACATTCCAGTAATCATGGATCTAGTAATTGAAATCTTCCtgcaatatataaaaatgtcgTAATGGACCAGACTGCATTCATGTTTTTTGGTATTTGACTGAGGCTCTGATCCAGAAACGGCTTCGCTGTCCTGCTAAGTGACACGTCAGTGGCCGTTTCGGGGACGCGCGTGTGACCTCCTAGCTACAGGGCTGTCTCTGTACAACCACTAGTCCACCTTACTGCTTCACTACCTACCGGCCGCGGCGCAACTTTGATTCAGCgtcaggatttattttttttttgtctacacAAGGTTGACCAGCAGTAGTACTGCCACTCACTGGCTCACGTTCAACCAAAGTCAGCTCCACGCCTGGACATGAattctttttttggttttgatgaCCGAACTTCCATTCTCTTTTCATCTGAAATTTCCACTCTTCTTCTAAATCAGGCCTGTGCCGTTAGCTCAGACCTGCCGACGCTGGAGTGATGGACTTCAGCTCTGAAAGGGGTGACCACCGGGGAGAGCATGTTGATGTCTATACTTAATATTCCATACCCTGTCTTCACATGgtcaaatgcacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_039780801.1
TTGAGCTTTGAAAGAGGGGGCCATCATCCCGGCGGCTCGGAGGtgaaaaaatacagtttaaagtCTCTCTGGAtgcatttaaaatgaataaGCAGGCTTTTCTGACAGGCACCTGAATGCCCGTCCAGCGCCCTTTCATTTCCTCGCTGGGTTTCTTTGGATGTACTCCCTTGGCATTTTGTGCTGTCCATCTGATGTTTCCCAAGACTCCTCAAGACCAATGTCTTAGTTCTGACTAgacattcattaaaaaaaaaaatactttcatgCATTCAGTATACATAgcttaaaaaagaaatctccAGCAGGAATTCCACCAACCCATCGCCTGTATCGCCCTCCTTCCCCTCTCCCTTTTTCTCTTCACGTCAGATTAAGAGGGGCACCGAAACCCACTTAAGACGCACAGGCGCACACATAACGTGCACAGGCCAGCATGTCCTCCATCCTTCCCTTCACTCCCCCGGTAGTGAAGCGCCTCCTGGGATGGAAGAAGACTCCGGCAGGGAGTGGGGGAGCCGGAGGAGGCATCGGAGGAGTTGGGGAGCAGAACGGAGGGGGGCAGGAGGACAAGTGgtgtgaaaaagctgtaaagAGCTTggtgaagaagctgaagaagacTGGGCAGCTGGATGAGCTAGAGAAAGCCATCAGCACGCAGAACAGCAACACAAAGTGTGTGACCATACCCAGGTCACTGGACGGGCGTCTTCAGGTGTCCCATCGCAAGGGCCTGCCCCACGTCATCTACTGCCGCCTGTGGAGATGGCCGGACCTCCACAGCCACCATGAGCTCAGGGCCATCGACTCCTGCCAGTTCGCCTTCAACCTCAAAAAGGATGAAGTGTGTGTCAATCCCTACCATTACCAGAGAGTGGAGACGCCGGTGCTGCCTCCGGTGTTGGTGCCACGCCACACAGAGATCCTGACAGAGCTTCCTCCTCTAGACGACTTTACAAACTCCATCCCCGAAAACACCAACTTCCCCGCCGGCATAGACCCTCCTAATAACTATATACCAGaGACTCCTCCACCTGGCTACATCAGTGAAGATGGAGAGACCAGCGACCAGCAGATGAATCAAAGCTCACCAGCAGAAATGTCACCCGGCACCCTATCACCTGTCAGTCATGCTCTGGaccTTCAGCCAGTTACCTACAGTGAACCAGCTTTCTGGTGCTCGATAGCCTACTATGAGTTAAACCAGCGGGTCGGAGAGACGTTCCACGCCTCGCAGCCATCGCTGACAGTCGATGGCTTCACCGACCCCTCCAACTCTGAACGCTTCTGTCTAGGGCTTCTCAGCAATGTTAACAGGAACGCAACTGTTGAAATGACAAGGAGACAcatagGTCGCGGTGTGAGGTTGTATTACATCGGAGGGGAGGTGTTCGCCGAGTGCCTCAGCGACAGTGCCATTTTTGTCCAGAGTCCCAACTGCAACCAGCGATATGGCTGGCACCCTGCCACAGTCTGCAAGATACCGCCAGgCTGCAATCTGAAGATTTTTAACAACCAGGAGTTTGCTGCACTGCTGGCCCAGTCAGTCAATCAGGGTTTTGAGGCAGTCTACCAACTAACCAGGATGTGCACCATCAGAATGAGCTTCGTCAAGGGCTGGGGAGCGGAGTACAGACGTCAGACCGTAACCAGCACTCCCTGTTGGATTGAGCTGCATCTCAACGGCCCCCTCCAGTGGTTGGATAAGGTGCTGACCCAGATGGGTTCACCATCAGTGCGCTGCTCCAGCATGTCCTAAACGAGGTCCTGCTGCTGCCTACGCAAAGTCAGTCTGATTTTTCACAACATTTGTCCTTGCCCGTATGTCCTAAGGAAGACCACAATGCAGTCTTAAATTGATGCACCACCAACATTATCATtttaagaaagagagagagagagagaagaaaaagtaacAACAAAGATTACACAATGCACCTGGAGGACGGGAGAACAACATGCTGATAAGACAATAGTGGGATGTTAACAATGATGTCACAGTGGGCCTGATCATCCTTTCTGGCTCCGTTGGATTAATGTTAGGATGACATTCCAGTAATCATGGATCTAGTAATTGAAATCTTCCtgcaatatataaaaatgtcgTAATGGACCAGACTGCATTCATGTTTTTTGGTATTTGACTGAGGCTCTGATCCAGAAACGGCTTCGCTGTCCTGCTAAGTGACACGTCAGTGGCCGTTTCGGGGACGCGCGTGTGACCTCCTAGCTACAGGGCTGTCTCTGTACAACCACTAGTCCACCTTACTGCTTCACTACCTACCGGCCGCGGCGCAACTTTGATTCAGCgtcaggatttattttttttttgtctacacAAGGTTGACCAGCAGTAGTACTGCCACTCACTGGCTCACGTTCAACCAAAGTCAGCTCCACGCCTGGACATGAattctttttttggttttgatgaCCGAACTTCCATTCTCTTTTCATCTGAAATTTCCACTCTTCTTCTAAATCAGGCCTGTGCCGTTAGCTCAGACCTGCCGACGCTGGAGTGATGGACTTCAGCTCTGAAAGGGGTGACCACCGGGGAGAGCATGTTGATGTCTATACTTAATATTCCATACCCTGTCTTCACATGgtcaaatgcacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
smad2 Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic pattern specification and intracellular signal transduction. Acts upstream of with a positive effect on nodal signaling pathway. Acts upstream of or within negative regulation of transcription by RNA polymerase II; neural plate anterior/posterior regionalization; and positive regulation of oocyte development. Located in chromatin and nucleus. Is expressed in brain; head; immature eye; and tail bud. Human ortholog(s) of this gene implicated in Lynch syndrome; cervical cancer; and ovarian cancer. Orthologous to human SMAD2 (SMAD family member 2).

NR:

description
PREDICTED: mothers against decapentaplegic homolog 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236287 False 1548 lncRNA 0.43 1 13583617 13585164
XM_039780800.1 True 2680 mRNA 0.51 10 13584169 13606140
XM_039780801.1 False 2668 mRNA 0.51 10 13584169 13606140

Neighbor

gene id symbol gene type direction distance location
skor2 skor2 coding downstream 125722 13444706 ~ 13457895 (-)
hdhd2 hdhd2 coding downstream 143909 13431609 ~ 13439708 (-)
galt galt,LOC102780609 coding downstream 196643 13355188 ~ 13386974 (-)
si:busm1-57f23.1 NA coding downstream 1085665 12490251 ~ 12497952 (-)
musk musk coding downstream 1116452 12422834 ~ 12467165 (-)
LOC120545744 hspb9 coding upstream 7140 13613280 ~ 13614293 (-)
LOC120545595 epha5,LOC102777475,LOC102204755,LOC102304993 coding upstream 25961 13632101 ~ 13706928 (-)
plppr1 plppr1 coding upstream 353162 13959302 ~ 14020451 (-)
snx30 snx30 coding upstream 555522 14161662 ~ 14179566 (-)
LOC120545561 NA coding upstream 583525 14189665 ~ 14197516 (-)
G174563 NA non-coding downstream 1109 13581390 ~ 13582508 (-)
G174546 NA non-coding downstream 155534 13427855 ~ 13428083 (-)
G174537 NA non-coding downstream 191683 13390053 ~ 13391934 (-)
G174536 NA non-coding downstream 193647 13389585 ~ 13389970 (-)
G174512 NA non-coding downstream 306549 13271456 ~ 13277068 (-)
G174592 NA non-coding upstream 248175 13854315 ~ 13854727 (-)
G174590 NA non-coding upstream 253812 13859952 ~ 13863997 (-)
G174593 NA non-coding upstream 266403 13872543 ~ 13873145 (-)
G174606 grin3a non-coding upstream 349128 13955268 ~ 13957200 (-)
G174627 NA non-coding upstream 526715 14132855 ~ 14135254 (-)
ier3ip1 ier3ip1,LOC106633120,LOC102779563,LOC104954869 other downstream 139538 13441280 ~ 13444079 (-)
cntfr cntfr,LOC108232720,LOC103473535 other downstream 665057 12646286 ~ 12918560 (-)
tmem267 tmem267 other downstream 946123 12631225 ~ 12637494 (-)
G174442 lpar1 other downstream 1192133 12390555 ~ 12391484 (-)
G174439 NA other downstream 1225727 12356928 ~ 12357890 (-)
G174799 dusp4,LOC103390320,LOC107396907,LOC107092021,LOC103473566,LOC102218109 other upstream 874322 14480462 ~ 14483417 (-)
G174827 NA other upstream 978559 14584699 ~ 14589020 (-)
G175000 arpc3 other upstream 2044597 15650737 ~ 15654486 (-)
LOC120545627 LOC102205042,LOC104934790,LOC102798225,LOC102289738,LOC100705220,LOC101481478 other upstream 2647707 16253847 ~ 16298146 (-)
G175225 nrarp,nrarpa other upstream 2877786 16483926 ~ 16499971 (-)

Expression


Co-expression Network