G175000 (arpc3)


Basic Information

Item Value
gene id G175000
gene name arpc3
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 15650737 ~ 15654486 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU236877
TATTTTTCAATCTCCATGATTTCTTTATTGAATTAAGCACCAGCTCAATATGGTTAACATCTAGACAAATTAAGACATATCCTTAAACTCAAAGAGTATAAAATCATCTTAGCAACACAGAAgcagacccccccccctccaacccCACCATCTTGCAGGTGTAGAATAGAAACTGAGTCGTTAGTCGTTCACTGTCCAGGAGCTGACAGACTTTTGTTCATGAACTGCCTCTTGACAAAGCACACCCAccaCTTGCTGGGTTTGTCTGTCTGGGGGTCAAACACGCGATCACATAGCCTCAAGCCGGTCTCCTGGCGGATCTGCTGGAGGTACGCCCTCATAGTCTCATCCTCTTGCTTGTTTGCAGGTTTGACGTACATAGCATTGAGAGGGAAGCCAGGTTCTCCAGGAATGGGGAAGTTAGTGATGCCCAGAGTGTACATCTCCTTCTCCCCCTGGCTCCTGGAGCTGCACTTCTGTAGTCTCTTTAGGCATTCCGAAATGTACAGTGTGACGTAGATCAGCGTCCTGTCTGCCTCCTTGATTTCATAGTTCTTAAAGAAAACATTGGCCTTAAAGTAGTAGATGGCCTCATCAATGATATCTGACTCTATGcctgaaatgaagaaaaaaaaaagataaaaggcTCTCCACTCACTACATAATACAGAGATGCATATAACTATTTacttttaaacttttatttaatAAGTGTTGTCAAAGTATGTATTAATGCAGTAATTTCCTGTTTTAGTCACcacatctttttgttgttgtatggCAAGTCCCTATTTTTGAGTCGTGATATACAGGCTGCTAAGAAACAACTCCCAAGTGACCAAACAATATACAGTTTTTAATGGTGAAAATCTCATCAAATCATGACTTCACTAGGACTACCAAATCAAATCCTCTGCTCTATACTCACTTCAAGCTTTACAGACACTTAAATGCTGGAAACGGAGCGTCAAGACAATGAAGAAGTTGAAGTTTAGGATGCGCTCTTGAAGCCATATATGGAAGTGAAGCCGATACATGTTTCAGGAACTGAGCAACGTGTCACAACAAGaagTCCTGGAGTCACACTACTCCCGGTCCTCAGCTGTCAACTTTGTCTTGAAAAAACGCATCATAATTGAGGTTAGCAGGCTCTTCATCAACC
>TU236878
TATTTTTCAATCTCCATGATTTCTTTATTGAATTAAGCACCAGCTCAATATGGTTAACATCTAGACAAATTAAGACATATCCTTAAACTCAAAGAGTATAAAATCATCTTAGCAACACAGAAgcagacccccccccctccaacccCACCATCTTGCAGGTGTAGAATAGAAACTGAGTCGTTAGTCGTTCACTGTCCAGGAGCTGACAGACTTTTGTTCATGAACTGCCTCTTGACAAAGCACACCCAccaCTTGCTGGGTTTGTCTGTCTGGGGGTCAAACACGCGATCACATAGCCTCAAGCCGGTCTCCTGGCGGATCTGCTGGAGGTACGCCCTCATAGTCTCATCCTCTTGCTTGTTTGCAGGTTTGACGTACATAGCATTGAGAGGGAAGCCAGGTTCTCCAGGAATGGGGAAGTTAGTGATGCCCAGAGTGTACATCTCCTTCTCCCCCTGGCTCCTGGAGCTGCACTTCTGTAGTCTCTTTAGGCATTCCGAAATGTACAGTGTGACGTAGATCAGCGTCCTGTCTGCCTCCTTGATTTCATAGTTCTTAAAGAAAACATTGGCCTTAAAGTAGTAGATGGCCTCATCAATGATATCTGACTCTATGcCGTCTCCTCTGGCTGGTCCCTTAAACTGGGTTTTGAGGGGAAGCAAAGCCATATTCCCCACCATCCTGGTGTCGGGGACCATCAGGCTTGAGTGATACgcCGGCATGTTGAGTGATAAATATCAGTCCAGAAAAATACTAACACTACAGGACCCAGTTTCCGCTTGTCCCACCCTTCAGCTTTACAGGAAGTGGCCACGTTATGTGGCGTACCGTCCACACGGAGGCGCTACcatagac

Function

symbol description
arpc3 Predicted to enable actin binding activity. Predicted to contribute to actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC3 (actin related protein 2/3 complex subunit 3).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236877 True 1162 TUCP 0.42 6 15650737 15654486
TU236878 False 855 TUCP 0.48 7 15651253 15654486

Neighbor

gene id symbol gene type direction distance location
rnf170 rnf170,LOC100709059,LOC101475878,LOC104928258,LOC101162541 coding downstream 3351 15642510 ~ 15647386 (-)
hook3 hook3 coding downstream 11262 15612613 ~ 15639475 (-)
trabd2a trabd2a coding downstream 57895 15528033 ~ 15592842 (-)
LOC120545505 sfswap coding downstream 298294 15293400 ~ 15352443 (-)
LOC120546041 mmp17,LOC104920097,LOC100702797,LOC103357701 coding downstream 359411 15155407 ~ 15291326 (-)
ube2g1b LOC103359726,LOC104928254,LOC104960022,LOC103389409 coding upstream 1155 15655641 ~ 15662603 (-)
si:dkey-1d7.3 LOC103359730 coding upstream 278072 15932558 ~ 15968405 (-)
si:ch73-287m6.1 LOC103359727,LOC100704150 coding upstream 325022 15979508 ~ 16047955 (-)
noc4l noc4l coding upstream 396076 16050562 ~ 16056866 (-)
pus1 pus1,LOC102776575 coding upstream 403507 16057993 ~ 16060742 (-)
G174992 NA non-coding downstream 42358 15608166 ~ 15608379 (-)
G174988 NA non-coding downstream 47394 15603063 ~ 15603343 (-)
G174953 NA non-coding downstream 134282 15516042 ~ 15516455 (-)
G174944 NA non-coding downstream 179952 15470444 ~ 15470785 (-)
G174920 NA non-coding downstream 279978 15370444 ~ 15370759 (-)
G175008 NA non-coding upstream 262872 15917358 ~ 15918780 (-)
G175063 NA non-coding upstream 519769 16174255 ~ 16180889 (-)
G175065 NA non-coding upstream 525032 16179518 ~ 16185972 (-)
G175073 snrpd3,LOC106566253,LOC105014836,LOC106563120 non-coding upstream 562444 16216930 ~ 16219263 (-)
G175123 NA non-coding upstream 596564 16251050 ~ 16251395 (-)
G174827 NA other downstream 1061717 14584699 ~ 14589020 (-)
G174799 dusp4,LOC103390320,LOC107396907,LOC107092021,LOC103473566,LOC102218109 other downstream 1167320 14480462 ~ 14483417 (-)
smad2 smad2,LOC102778427 other downstream 2044597 13583617 ~ 13606140 (-)
ier3ip1 ier3ip1,LOC106633120,LOC102779563,LOC104954869 other downstream 2206658 13441280 ~ 13444079 (-)
cntfr cntfr,LOC108232720,LOC103473535 other downstream 2732177 12646286 ~ 12918560 (-)
LOC120545627 LOC102205042,LOC104934790,LOC102798225,LOC102289738,LOC100705220,LOC101481478 other upstream 599361 16253847 ~ 16298146 (-)
G175225 nrarp,nrarpa other upstream 829440 16483926 ~ 16499971 (-)
ptgdsa NA other upstream 916053 16570539 ~ 16594366 (-)
G175452 pde6b,LOC108232538 other upstream 1676470 17330956 ~ 17332475 (-)
LOC120546105 atp5i,atp5ia,LOC107703581 other upstream 1685488 17339974 ~ 17341638 (-)

Expression


Co-expression Network