G175797


Basic Information

Item Value
gene id G175797
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18449802 ~ 18451068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU237970
GTGTTGTACAGATTTATGATGCTGAGCTTAGCTCAGCCTTAACATTATTTTCAACATAGGgcaaaaacaccaacacaaaaacatttaagtaATTTCTACGATGCAGAGACAAACACTGAAATGTCATGGCAGCATTTATGGAAAGCTGGGTGACAGCTATCGGATGCCGTGCATTGAAATCCCATTTGTATGTGTGATTCTCAGAAACAGCTACTGATTATAatttctcgctctctctctcgctctctcatcTGCGCAAACATGTAACAAATAACTCCTTTAAAAGTCTTCAGTCCTCTGTGTATTTCTTTATCCAGTCATCCAGCTGAAAGATGTGCTCTTTAATTTGAGAAAACAGGATCTGGACAGTTCATAATCAAATTCTCCACATTATAATATGTCTGTTTTGTACAATCCCAGCAGAGAACAGCTTCTCTTACTTAGAAAAAGTCTGAGGCTTTTCGTCTCTTGGGGAGTTGCAGCAGATTGTCTGTGAGTGATGTAAGGTCCTGAGAGCTCGGAGTCTTGGCTTTGTCTGGTGTTGGCGTTCCTGAGGGAGTGGATGGACCACCGAAGGGAGACTTGCAGCCAGTGACGCCATGCGAGGGTGATGGGGTGTAACTCGCTCGTAGAGCTTTGTCCGTGTATTTGCTGGATGTCCGATTTACAAGCCTCTGCAGGGCGGGGGTGAGGGCTGGACTCAGACCTTTAGGTGTACGACTAAATGATGGACCGTGGTTCCTCTCAACATATGGGGAGTCCGATCCATCCAGACGAAATGGGGTGCTCTCGATCTCACCCCAGGTCATTAGAGGCGACTCAGCT
>TU237971
GTGTTGTACAGATTTATGATGCTGAGCTTAGCTCAGCCTTAACATTATTTTCAACATAGGgcaaaaacaccaacacaaaaacatttaagtaATTTCTACGATGCAGAGACAAACACTGAAATGTCATGGCAGCATTTATGGAAAGCTGGGTGACAGCTATCGGATGCCGTGCATTGAAATCCCATTTGTATGTGTGATTCTCAGAAACAGCTACTGATTATAatttctcgctctctctctcgctctctcatcTGCGCAAACATGTAACAAATAACTCCTTTAAAAGTCTTCAGTCCTCTGTGTATTTCTTTATCCAGTCATCCAGCTGAAAGATGTGCTCTTTAATTTGAGAAAACAGGATCTGGACAGTTCATAATCAAATTCTCCACATTATAATATGTCTGTTTTGTACAATCCCAGCAGAGAACAGCTTCTCTTACTTAGAAAAAGTCTGAGGCTTTTCGTCTCTTGGGGAGTTGCAGCAGATTGTCTGTGAGTGATGTAAGGTCCTGAGAGCTCGGAGTCTTGGCTTTGTCTGGTGTTGGCGTTCCTGAGGGAGTGGATGGACCACCGAAGGGAGACTTGCAGCCAGTGACGCCATGCGAGGGTGATGGGGTGTAACTCGCTCGTAGAGCTTTGTCCGTGTATTTGCTGGATGTCCGATTTACAAGCCTCTGCAGGGCGGGGGTGAGGGCTGGACTCAGACCTTTAGGTGTACGACTTGCGAGGTTCTCTGTAACCTTTCGCAATGCCTCCTGTTTCTTAGCGCGGTTTTTAGCGGCAGCTTCATTGGCCATCTTTAAACCCagcctctctcttcttcctGGTTCTGGAATCTTTTAGAAACCGATTATAAATGTCAACATTTTACAACCTAacaaataattgaaaaaaaaactaacaacaacaaaaaaaacaatgattcGTTACAGCTACCACTGTAGGTTCAGTACCTTAAATGATGGACCGTGGTTCCTCTCAACATATGGGGAGTCCGATCCATCCAGACGAAATGGGGTGCTCTCGATCTCACCCCAGGTCATTAGAGGCGACTCAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237970 False 825 lncRNA 0.46 2 18449802 18451068
TU237971 True 1059 lncRNA 0.44 2 18449802 18451068

Neighbor

gene id symbol gene type direction distance location
setd1ba setd1b coding upstream 28353 18405378 ~ 18421449 (+)
orai1b orai1,LOC103390458 coding upstream 62330 18384808 ~ 18387472 (+)
rnf34b LOC102198247,LOC101472476,LOC102778596,LOC102300128,LOC100691293,LOC108232543 coding upstream 89215 18342719 ~ 18360587 (+)
ggt5b NA coding upstream 179413 18261271 ~ 18270389 (+)
LOC120544962 LOC104923128,LOC100702751,LOC101476754,LOC102201716 coding upstream 250108 18193174 ~ 18199694 (+)
LOC120545648 NA coding downstream 7444 18458512 ~ 18461772 (+)
LOC120546057 iscu,LOC100705178,LOC102784710,LOC103373105,LOC104958920,LOC101065972,LOC105915304,LOC101167135 coding downstream 20179 18471247 ~ 18474039 (+)
LOC120546054 susd2 coding downstream 97719 18548787 ~ 18557460 (+)
LOC120546055 LOC103360654,LOC104934677,LOC104958911 coding downstream 107492 18558560 ~ 18560433 (+)
taok3b LOC104958930,LOC103360656 coding downstream 111372 18562440 ~ 18571048 (+)
G175792 NA non-coding upstream 18105 18429684 ~ 18431697 (+)
G175772 NA non-coding upstream 27124 18421529 ~ 18422678 (+)
G175696 NA non-coding upstream 210855 18235236 ~ 18238947 (+)
G175695 LOC103473718,LOC103148770,LOC106925514,LOC101169050,LOC106514486 non-coding upstream 215640 18231033 ~ 18234162 (+)
G175687 NA non-coding upstream 240743 18207774 ~ 18209059 (+)
G175804 rnf185 non-coding downstream 13202 18464270 ~ 18466064 (+)
G175891 NA non-coding downstream 136691 18587759 ~ 18588293 (+)
G175917 NA non-coding downstream 206622 18657690 ~ 18658284 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding downstream 219315 18670383 ~ 18673965 (+)
G175974 NA non-coding downstream 385107 18836175 ~ 18836754 (+)
tmem120b tmem120b,LOC101471304,LOC102195879 other upstream 49356 18391739 ~ 18400446 (+)
lrrc75bb LOC102299816,LOC101473269,LOC102199085,LOC100691028,LOC103366102 other upstream 120977 18295836 ~ 18328825 (+)
antxr1b LOC100694769,LOC102799311,LOC101477777,LOC102295999 other upstream 304352 18124842 ~ 18145450 (+)
G175640 LOC102204295,LOC100701817,LOC103369925,LOC106514495,LOC101480226 other upstream 354279 18067132 ~ 18095523 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other downstream 85563 18536631 ~ 18548141 (+)
cabp7b cabp7,LOC104925332 other downstream 183958 18635026 ~ 18651069 (+)
LOC120545610 NA other downstream 205456 18656524 ~ 18657619 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other downstream 224953 18676021 ~ 18723785 (+)
LOC120545529 ermp1,LOC102800265 other downstream 929182 19380250 ~ 19402379 (+)

Expression


Co-expression Network