G175804 (rnf185)


Basic Information

Item Value
gene id G175804
gene name rnf185
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18464270 ~ 18466064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU237986
CCGGCTCAGGTCTCTGCCCTTGTGGTCGAGGGGGTGTTCTTTCTCTGGGGTCCTGTTGACCAGTGCTTCCCCGTCCGTATAAGGGGATTACTTTGTCTCGGCTGATGCCCGCTTTACACACTGGACACACTTGTCTGTTGGGTCTGGTCTCCAGCCACTGATGCAAGCAAGGCCAACAGAAAAGGTGTCCACACAGGCTGATCACTGCATCCTTGGCGGTGTCCAGGCATATATTACACTCGAAAGTGCTGTCCTGGTTGCCGCTGTCGGCCGCTGTCGAGCTGCTGGATCCGGGACTTGGGCTTTCAGTGGCCGCAGCAGAGCCAGGAGCTGGAGGGGGGGCAGCGGTGGCCATTTACAGATAGATCCGCTCAGCAAGAGGGTACAGGTGGAATGACTCTGCTGGCACACAGCGTTTCAAAATAAGTACATAGGGGGACCCAGTATATGACCGTTTGTAGCTAGCAAAGAGGAGAAGACGAGGGACTGAGCTTAATACGAATAACTCTTAAAAAAATGAGTGAAATCGAATAAAATCGACCGACTGCTAGCTAACGTGAGCTCCCATCTAGTGTCGTTAAGTAGTTGCTATCGTTAGCAAGCGAAGAAGAAAACAGACAGTTTCACCGTCTGACAAAGCAACGAACAACAGATACAGTAGCGGTAATCCAAAGTTTGGTTCCAAACGTGATTTTctaactaacaaaaacaaaacttgttGCGAGAAGTTGAGACAGCTCGTTGCATCACACATCCGTAGCGCTACGTACTGTTAACTGATC

Function

symbol description
rnf185 Predicted to enable ubiquitin protein ligase activity and ubiquitin-like protein conjugating enzyme binding activity. Predicted to be involved in ER-associated misfolded protein catabolic process and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum membrane and mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human RNF185 (ring finger protein 185).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF185

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237986 True 782 lncRNA 0.50 4 18464270 18466064

Neighbor

gene id symbol gene type direction distance location
LOC120545648 NA coding upstream 2498 18458512 ~ 18461772 (+)
setd1ba setd1b coding upstream 42821 18405378 ~ 18421449 (+)
orai1b orai1,LOC103390458 coding upstream 76798 18384808 ~ 18387472 (+)
rnf34b LOC102198247,LOC101472476,LOC102778596,LOC102300128,LOC100691293,LOC108232543 coding upstream 103683 18342719 ~ 18360587 (+)
ggt5b NA coding upstream 193881 18261271 ~ 18270389 (+)
LOC120546057 iscu,LOC100705178,LOC102784710,LOC103373105,LOC104958920,LOC101065972,LOC105915304,LOC101167135 coding downstream 5183 18471247 ~ 18474039 (+)
LOC120546054 susd2 coding downstream 82723 18548787 ~ 18557460 (+)
LOC120546055 LOC103360654,LOC104934677,LOC104958911 coding downstream 92496 18558560 ~ 18560433 (+)
taok3b LOC104958930,LOC103360656 coding downstream 96376 18562440 ~ 18571048 (+)
m17 NA coding downstream 107600 18573664 ~ 18575134 (+)
G175797 NA non-coding upstream 13202 18449802 ~ 18451068 (+)
G175792 NA non-coding upstream 32573 18429684 ~ 18431697 (+)
G175772 NA non-coding upstream 41592 18421529 ~ 18422678 (+)
G175696 NA non-coding upstream 225323 18235236 ~ 18238947 (+)
G175695 LOC103473718,LOC103148770,LOC106925514,LOC101169050,LOC106514486 non-coding upstream 230108 18231033 ~ 18234162 (+)
G175891 NA non-coding downstream 121695 18587759 ~ 18588293 (+)
G175917 NA non-coding downstream 191626 18657690 ~ 18658284 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding downstream 204319 18670383 ~ 18673965 (+)
G175974 NA non-coding downstream 370111 18836175 ~ 18836754 (+)
G175973 NA non-coding downstream 385014 18851078 ~ 18854548 (+)
tmem120b tmem120b,LOC101471304,LOC102195879 other upstream 63824 18391739 ~ 18400446 (+)
lrrc75bb LOC102299816,LOC101473269,LOC102199085,LOC100691028,LOC103366102 other upstream 135445 18295836 ~ 18328825 (+)
antxr1b LOC100694769,LOC102799311,LOC101477777,LOC102295999 other upstream 318820 18124842 ~ 18145450 (+)
G175640 LOC102204295,LOC100701817,LOC103369925,LOC106514495,LOC101480226 other upstream 368747 18067132 ~ 18095523 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other downstream 70567 18536631 ~ 18548141 (+)
cabp7b cabp7,LOC104925332 other downstream 168962 18635026 ~ 18651069 (+)
LOC120545610 NA other downstream 190460 18656524 ~ 18657619 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other downstream 209957 18676021 ~ 18723785 (+)
LOC120545529 ermp1,LOC102800265 other downstream 914186 19380250 ~ 19402379 (+)

Expression


Co-expression Network