G176225 (LOC104956387,LOC101069739)


Basic Information

Item Value
gene id G176225
gene name LOC104956387,LOC101069739
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19563246 ~ 19565919 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU238529
ttttaaatttattgcAGGTATTCTGTTATGTACATGTTTATTTACAAAGTTATCCATGTGTTTCAATCTAATTTTGATACTTTTTTTACAGCTGTATCTGTAATCTCCTGAAGTATGATTAGAAAATCCTATAaacaatcataaaaaaacaggctataaaaaaagaaatgggacCATCTATCTTTGATACATGCAGGAGCAAGCTGATTTACagagttgaaaaataaatactatTGACAAATAGCATTCTATCAACCATACGCATTTAAAAATTTGAATTAACATACACTCATTTAGTTTGATTGTCAGAGAAGTGCCATTTTGGggattaatacaaaatattttagAGCACAAGCATTCACTGAGTACAGCATGAGACTGCATGAAACACAACTAGAActtataaaaagataaaaaatctCCAAACTTTGCAGGGTTGTTATGTCAGAACCTTTTCAACCTATCTGAAATTACAATGCTATACTGCAATGCTGTAGTTTGTCACACAAATCCCCATGGAGAGTGTGGTATAGTGTACAatccaaataaataataattttagaTTTAGACTTCTTCCAATGTAACAACCTACACGTATGCACAACACAAGGACTGTGGCAAGGTTTTGCAGGATGGCATTgctgaacaacaacaaaagtatGAATGTCAGGTAGCTTGTTTATTcattactgtatactgtatgttggcaTGGAAAATAGGTTTAATCATATAGAGCTCATACAAACACATTTAGGGTTAAAACCGCATGTCttgcttgtgtgtttgtcttcacTAAACAGAGCATGATTTAATAGTGTTTGTAACTGCAGTATTAACCCAAATCAAAGTGATAATTTATAGTGTCTGCCAATTGCTTCAAGAAATATGTTTTAAGTCTGGGGTTTAAATCTGTTATTCTGATCTGAATTACATCAGTTTCTTTACTGTAAAGCTACCTCTCCATCAGAAACTGAAACCGTGATCAACACATGCTCTTTCAACTTAATGACCGTCACACTCCAACTGCTAATCTTTATGTAGCTGTATCGAATAATTACTacacttaaagctgcattcatgattttttttgtccacTTGAGGGCAGAAGAACATCACAACAAGGCGACAAACCCACAGCcctgacatattatcaccttataaaGTGGTAATGTGTTAGCAACCCTGTGCCTAATTACACATCCAGACACAGAGGAACATTTCATCAGTTCTCAGTGTTTCTGGACATATGATGACTTCCATACTGGAAGAACAAGAcgatatgttatgttatgtccCAATCCAACAGTTATCTGTGTGAATCAATCTCAAATCGACCAAAAATGGATTTAGCAAATGTACGTCATTGTATTAGTACGAATATACCTGAAAAAATGAAGCCAGGTCATGTTTCTCATAATGGCcttaacatgtaaatgtaccCAGCAACAGGAGAGATTTTAAGAGTAAGCAAATTCGCCAAAGAGCCACACCAAAAGCTCCCATCTGCTTATTCATTTTAACTTATAGCAATTTGACCACAAAGTAAGATTTTAACtacaaaaatttaaaagaaaatgagaaCTCAGGATAATGTGACAGTAGacaatatcctttttttttttacataaatttgGGACATGAACACAAAACAAGAGTTTTGTACTTTGACATCCAAAAAACACCAACGCACAAGAAGGCCATCAACTTGGGGACTGCTGGCAAAGCATCTGAAGCATTTTTTGTTCTTCTGTTCAGTGTCCCCTGTGTTCACTTTCTCTGCACCTTAGCAGTCTGTGTATATTCTGGTCCAGCTACACTTTATTCATGTTTATGTTATTTGCTTATAAGTGCAGATGCTGTCACAACAAGTTAAGTGATAGGATGTTTGCTTTCCAACTTCAACACCATCTTACCAATATCCACTGCTGTCCGTGAACCAACACTGATCTCATTAAGATGATCAGCTACACGTCctctaaaaatataaatataaattcaTCTAAACCCTGCCTTATTTTGgtcctttttttgtcttttccttttaATATTTGTATCTCTTGATTGGGAAAAAAAGCTCTTTTAGCTGTTTTCGTTCCACTCTGGCATGATGCTGACACTATGTACAGTGTGGTACTGGTGTGGCGATAGTGTACGTGGTATACCGTGTGTATAGAGGTACTCGTTTCCCTGTAGGCCAGCTGCTGGCGACTGGATCCCAGCCCCAGGACTGCACTGGCGGCCCAGAGTCTGGTGGGTCATGGAGCTCTGGTACATGGCAGCGTGGTGGCCATCGCCCAGCTGCGGAGAGGCGTGTCCCCCCACCCCGCCAAGTCTGGACACCAGAGACCCTGAGGTGAAGTGAGCGGAGAAGTGCTGGTAGGGCAGCCGGTCCATTGGCTGCATGGTGGTGACGGAGCAACTCCCATAGGGTGAAACGCTGGCCCAAGTGTTGCAGCTGATGTCCTCCAAACTAGGAACTGGCTCAGCACCCTGGGTGGCACTGGCATACATACAGGCCTGTCGCTGACTGGATTCACTGCGGTAGGGCCCACTGGCCAGGCCGAGGCTCTGGGCGTAGCCAACAGGACGGTAGTAATGGTCCTCCTCACTGGACGAGCTCTCCAGATAGGCCTTCTTATAGCTGTGCTCACCTGAGTGACAGTCATCCTCCACT

Function

NR:

description
PREDICTED: T-box transcription factor TBX5-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238529 True 2674 lncRNA 0.40 1 19563246 19565919

Neighbor

gene id symbol gene type direction distance location
ddx54 NA coding upstream 37922 19516810 ~ 19525324 (+)
trnac-gca_32 NA coding upstream 45940 19517235 ~ 19517306 (+)
abl1 abl1 coding upstream 77140 19449563 ~ 19486106 (+)
exosc2 exosc2 coding upstream 115647 19441576 ~ 19447599 (+)
mlana mlana coding upstream 241007 19318972 ~ 19322239 (+)
lman2la lman2l,LOC108231067 coding downstream 328197 19894116 ~ 19900260 (+)
pax8 pax8,LOC102780591 coding downstream 363652 19929571 ~ 19943843 (+)
LOC120545547 LOC103368295 coding downstream 397852 19963771 ~ 19970112 (+)
bspry bspry,LOC100703027,LOC102783296 coding downstream 455038 20020957 ~ 20028430 (+)
traf2b traf2 coding downstream 471945 20037864 ~ 20050223 (+)
G176177 NA non-coding upstream 61062 19496036 ~ 19502184 (+)
G176173 LOC104959907,LOC106527788,LOC107745368,LOC106563285 non-coding upstream 71164 19488310 ~ 19492082 (+)
G175973 NA non-coding upstream 708698 18851078 ~ 18854548 (+)
G175974 NA non-coding upstream 726492 18836175 ~ 18836754 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding upstream 889281 18670383 ~ 18673965 (+)
G176226 LOC103367784 non-coding downstream 1020 19566939 ~ 19567169 (+)
LOC120546000 NA non-coding downstream 24823 19590742 ~ 19593712 (+)
LOC120545999 NA non-coding downstream 43752 19609671 ~ 19661055 (+)
G176240 NA non-coding downstream 128187 19694106 ~ 19694338 (+)
G176243 NA non-coding downstream 131925 19697844 ~ 19698070 (+)
LOC120545529 ermp1,LOC102800265 other upstream 160867 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 839461 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 905627 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 912177 18635026 ~ 18651069 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 1015105 18536631 ~ 18548141 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 345917 19911836 ~ 19914680 (+)
pappaa pappa other downstream 949428 20515347 ~ 20620786 (+)
G176526 NA other downstream 1380765 20946684 ~ 20947055 (+)
G176753 NA other downstream 2712961 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2930494 22496413 ~ 22524405 (+)

Expression


Co-expression Network