G176346 (fbxw5)


Basic Information

Item Value
gene id G176346
gene name fbxw5
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20055289 ~ 20061984 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU238670
CTGCTGATGAAGTGACTAATTCCCAAAGGTTTCTCTGAAAAATATGTACATGCAAATGCTACCAGTTGACTTTGTCCAGGTAATGACACGACCCACAATCATAATTCAAGTTTTTTTCTAATTGATCACAACCTCCTTCAGCAGGGAATCTCCACTGAAACAAATATCTACCAGGTAAAGTACCTAAACCTtgcattactttttgttttgattgttttataCCGGTCCTTCAGCAATAGAACTAAAAGGACCTTGAAGGACTACAGACATGACGGGAAGTTAAGGGGTAACCCATGTACACAAACATTTAGAGGCCGTTTCCCCCACTTTTTCTATTGATCTCAATGTCACGGTCCTTCTCAATATTGGTCTGcatgaacattttaaatcattATGCATCATTAGTTATACTAAAGAAAATATATCCTGTTGTACTTTTAAGATGTACTACAAACATATTGTATGTCTAAATTAAAGAACTGGGTGACATTTCTGTAActtgaattttgtttttattgttgtgtaCTATCTGTTCTTTCAACAAAATTACAACTCAACGGCAATTTACtgaatgtatttattaaatgtCATAACAAATTTGAAGTTGTGAAGTGAATTCAGAACGGCTCTAGGTTACCCATATGCAGGGTCTGGATATCCAGGTACCCCACACTGAATGTAGCAATTTTAGACTTCAAGTGGGGTTCTGCTTGGAAACTAAACAAaccatacatttttaaatttaaaaaatggccAGGGGACATCAATTTCAGAGATTCATCTTAATGTGTCAGAGAGTCTTTTGACAAAACTAAAGGGTTATGTGTTGTGCTACAAATGAAAAAGGGtgtttaaatacatttatatataatataggcCCAAATAACAATAAGCTacacaaaaaattttttttgttcacaGTCAACAACTCTTCTAGATTAAATTACTCAATAATTCTACTTTGAATAGAATAGTGATGATTCATTTCTGGGGCACAAACAATGAGATGTGATGTAATTAAAAACCAAGGCAGACTGCAGTATATGCGGCtacatgtttttccttttggttTTAAATGGTTTTATAATGATCTCAAAACAGGATTTCTAGGGTATTCATACTCAAGACATCAATTGGAAATATCCATTAATAAGAAAAGACAGTTCTGAAGTAATTCTCAGTTACAGCACGTTGCTTCTGATGAGCAGGACATAAGGTGCTGTCTCTGCAAgacatttacatacatttacacCTCAGGTCCAGGAGTCTTGACCTGTTCAGACACAACgttacagataaaaaaaacagacaaacaccaTCTCTTGGGTAACACGTTTGGACGTCTGTCTTGTGCATTTAGGTGTCAGCGCTACACTATCTACCTGTGCGAACATTTCAAATCACTCCTGACAACAGCCCAACAGAGTGTGTGGTGATTTCTGTCCTTTGCTGGTGCAACGGCGCTCTCTTGTGTCTAACCCTGAGTCACAACAAGTCCCGTCTCCTGTTAGCTGAAGACACCAAGCACTGCTGTGTGTCACAACACGGTGAGCTCAAGCAAAACAACTGACTGTAACCACACTGTAAATATACATgagtgtttatatatatatatatatatatatatatatatatatatatatacaccACAGAGGAAAAGATCAAACGTTCCTTCCCACAGCAAGTGTTTTCCAACCTGACTCATGGTTTTCCATTCACACTGCTGGCAGACGTTGAGTTCTTGTTGCGTCCCAGCCAGGACGGCAGGAGGCTGCGGGGCCTCAGCGGCCGGGAGGGGGCCTGCGCCAGGCGAACCATGCGCGGTGAGCGCCACACTTTAATGGTAGAGTCATCGCTTGCAGACAGCAGCAGCTCCTGGTCAGCGGGGCTGAACGCCACTGAGTTCACCACGTCGTCATGTGCCAGACGTGCCAGACAGATGTTGTAGTGACGGTCCCAGATGTAGCCGTGCTTGTCCTCT

Function

symbol description
fbxw5 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of centrosome duplication. Predicted to be located in cytoplasm. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex and SCF ubiquitin ligase complex. Orthologous to human FBXW5 (F-box and WD repeat domain containing 5).

NR:

description
zinc transporter BigM103, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238670 True 1981 lncRNA 0.40 3 20055289 20061984

Neighbor

gene id symbol gene type direction distance location
traf2b traf2 coding upstream 5066 20037864 ~ 20050223 (+)
bspry bspry,LOC100703027,LOC102783296 coding upstream 26859 20020957 ~ 20028430 (+)
LOC120545547 LOC103368295 coding upstream 85177 19963771 ~ 19970112 (+)
pax8 pax8,LOC102780591 coding upstream 111446 19929571 ~ 19943843 (+)
lman2la lman2l,LOC108231067 coding upstream 155029 19894116 ~ 19900260 (+)
bbln clg14h9orf16,LOC103376136,LOC106518230,LOC103028983 coding downstream 105943 20167927 ~ 20170745 (+)
dnm1a dnm1 coding downstream 119761 20181745 ~ 20236007 (+)
hspa5 hspa5 coding downstream 200791 20262775 ~ 20266809 (+)
rgs3a rgs3,LOC102788614,LOC104953710 coding downstream 215303 20277287 ~ 20425401 (+)
znf618 znf618,LOC101485385 coding downstream 396372 20458356 ~ 20497767 (+)
G176289 NA non-coding upstream 149166 19883987 ~ 19906123 (+)
G176292 mtfp1 non-coding upstream 162510 19888869 ~ 19892779 (+)
G176287 NA non-coding upstream 185742 19867818 ~ 19869547 (+)
G176286 med13l non-coding upstream 205384 19849690 ~ 19849905 (+)
G176284 NA non-coding upstream 249674 19805199 ~ 19805615 (+)
LOC120544937 NA non-coding downstream 6776 20068760 ~ 20069830 (+)
G176335 LOC103376127 non-coding downstream 17867 20079851 ~ 20087641 (+)
G176357 fubp3,LOC106522831 non-coding downstream 27122 20089106 ~ 20090858 (+)
G176410 NA non-coding downstream 175543 20237527 ~ 20241216 (+)
LOC120545553 NA non-coding downstream 375187 20437171 ~ 20440566 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 140609 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 652910 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 1331504 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 1397670 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 1404220 18635026 ~ 18651069 (+)
pappaa pappa other downstream 453363 20515347 ~ 20620786 (+)
G176526 NA other downstream 884700 20946684 ~ 20947055 (+)
G176753 NA other downstream 2216896 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2434429 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 2469924 22531908 ~ 22537337 (+)

Expression


Co-expression Network