G176410


Basic Information

Item Value
gene id G176410
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20237527 ~ 20241216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU238769
TGCTCAATCAGTTTTATTCAGGAGAAAGGGAGAAAATATTACTCAAGGAAAAACTATTCAGAAAGCTTCTGTCAGAAGCAGCCCTCGAACAAATCAGTTCTCTGAATGATCCTTCATTTCCATCCGTCGCTtctattttacattaaaactgATTAGTTGAGATACTAACTTATTCCAAATAAATAGAACATTTTCGCTTTTTTAGTCAATCTTTGTATTAAATCAGCCAGTCAGTAACCGCCAAGGCCTTGACTCTGAGCTCACTTTCAGACACACAGTCCACACTGCCAGTAAACATGGCAGAGCAGCTTTCCCCCACACACCAGGCATAATGAATATACAATATGTTACACAGTTACAGTATATACACCACCTCATTTACAGTAAAGACAATAAATGGTTCCTTGCTATTTGTTTCAATCACACATAACATATTTAACAGTGAATTAGAGTGTGGGAAGTAATTGTATCCATATTGTCTTGTTATTTTACAAGCCCCGAAACAATAAAATGATTTTATTGTATATTTACCTCTTCGTctgacaaaagaaacaaaattaatgaaaaatatAATCAAATCATATTTTGTGGCATGTTTCAAAGGAAACCAAAAAGTGACAGAATGCTAAGAAGCGAGGAATTTTTAAAATCAAGAATGATTAGgtaaatgtattcaaaaacTACCGGTTCCTAACAAGGTGCTGTGGTTTAGGGTGAACACAGCGCTGTTTACTTTGCCTGTAAAAAACACCAAGTATATATGGCCCCCacatattacttttttatttattttgcttaaaataccaacatttgcaCTATTGCTTTCTGTCCTGTTGCAGTTAGTGATAAATATCAAGTGTGCAATAATAACTTACAAATGTGTGCTACCttaaagtaaacacaacagagaGGATCTTAAAATTCAATGACATCCAAATGAGAAGGTTAAAATACCTCCAAAAGTAGTCTGTAGGATTTTTGTATGACTCGCAGTGAGACCCTCATGTCTTTGCATATTAAAATCATGGAAAGACTCTTAAAAACCAAAAGGCCTCTGCCATAACTTCATCTgaaatgggggggaaaaaatagcTGTGAGAGCTATGGTTTTTAGTTACAAAAGGAAAGAGATCATTGTTGATCAATTAATCCACCCTCCAATCTACATTTGTGAATATGAGCATCTCCCTCAAGGCTAGACACCTGCGATGTCTTAAGTTTAAGAAAAAGTAAACAAGGAATTTGGTAGGATCTCAATGTTGGGATCCTACCTAATTTCTTGTTTCCAATGCCCATAGGAGTGTTGCCAATGCAAGTTACTAAATTAATATGAACAGTAATGTGTGTAGTTTTGAAAAGAGTTGTTCATTTTCTCAAATTCTGATTGGTCCACACTTTTGGGAATAACATCACGACCTTTTGAACTGAGCAATCTCATTAATGTCACCTATTCATATTTACAATTCATCCTGCgagtgcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctCAGCTTAAAGAGTGTGGCTTCATAGGATTCCCTTTTTCTTCAACAGGATTAAGCAAGTTTCATTAGAAACGTCACTGTCCAACCAGCCACAGAGGACAGAGCTGAATGAGAAGCTTTGTACAGTTTTAGTGCAATCATTCTTATATAATCTGATAGAACTCTACAAAAAATACAACTTCGGCAGAAGAGGAAACACATGCGTACGTGATGTACACTCACACAGTCCAGTTGTAAAGGATGTGCATTAATTCTCCTCTGATATGTCGAACTATAAGCACATGTAACAGGAAAGAACAGGCTCTACTCAATAGTGTCAATTTGTTTAGAAACTTGAAGACCCCATAAAATTGAAGTTAGGACTCAGTTATGGATGAGCAGCTTTGatgaggggaagaaaaaaaaagtgtgtagaCATTTGAGATGAGGCCATGAATTATGAGTGCAGATAAAGAGATTTCAACACCATTTTTCCTGTAACTTCCTCTAGCCATCGCACCTTAGTATCTATCATGCTACTGACAAAGAAAAAGTAGAACTTGCAAAAAACAATAATGTGGAAAGCAACCTGAAGCACAGCACCCCAAGCTCTATTATTTATCTGAATTACACTAAAAAATAATGCCTTAATCTCTTTgactaaaatgtgttttttttttcttcatgggGTCTTTAAATTGCATCGATCCCCTCAATAACTTTAGAAATCACCCTTTCATAACGATGGGGAATTCTCTCAGTCTAACAGGATGTTTGACATCACAATACAAATGTTTCACATATTAACATATCGCAACATTTAACAAGACTTATTTTCAGTGTTTGGAGGATAAAGACAAAAGGTAGAGAAAAGGTTGTTTTAGGAACAGTACCAAGCTGCGACACCTGCCTCCATCTTTCTGAACCTCATCATGCAACTAGAGAGCTTGACTTTGAAATCATAACAGCGCCTACAGTTCAAAAGCTATTATGTGCACTCAGTGACTTTCTTGGACTTTAACTGACATCTCAATCTGTATCTCTTCTCCTCATGCACCCTTTCACCATCATCAATTCTCCTCACATTACGCAAACATACGGGTAAATATTCGCATTATTACATTCAAACGTGATGCTCATTTTTGGCATTTGTACAGTGAATTATGTATAACTGAGATGTGCACTAAAATGAAGTTGCACACAAGGCTAATCATTTTCGACATCTCTTTAAGTACTGTATCAGCAAGGGGACAGAATATAAGGCCCCTTTATTGCACTTATGTGTAAAATGAGAGACGAGAGGGGGGATAGGGATGAAAAATGGTGGTATGGAGAATAATCAGATTGCGTTAAGGAATACTGGTTCTCTCTGGGAAGAgcatcatagaaaaaaaaaaaaaaaaactgaaaatactcTCTATTtaaccatgcacacacattactgccaacacacagagagagggcaTTTTTATGTAACTGGGTCAAAGACGCTCACATATCAGTGACAAGTGGATATGATCAACAAGCTACGAACATGGTATACTGCGGTGTTTAATATGCCCTAGACTTTAACACATCCAattctcacacagacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctctcacACAACCAGGATTTTGACTTCATCCTGTTCGTCAGGCCGGTAGAAGAAGGGGATGCAGGGGTTCTCCCCGAGGAAGGGGGGTGATCTTGGCGCCCCCTGTGGGTTCTGGATGTCGTGGAGCAGCTGCATGATCTGCTGGGCTGTGCCGTCCTCTTTGGGCCCCGGGGCCTTGGAGTCTGTCTGGGCTGACCCACTCAACAGCATCTGGGACGACGGGGCTTCCAGGGTTGTAGTGGGTTCTGACAGAGGAATGACTTCCATGGCTtctgc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238769 True 3586 lncRNA 0.39 3 20237527 20241216

Neighbor

gene id symbol gene type direction distance location
dnm1a dnm1 coding upstream 1520 20181745 ~ 20236007 (+)
bbln clg14h9orf16,LOC103376136,LOC106518230,LOC103028983 coding upstream 66782 20167927 ~ 20170745 (+)
traf2b traf2 coding upstream 187304 20037864 ~ 20050223 (+)
bspry bspry,LOC100703027,LOC102783296 coding upstream 209097 20020957 ~ 20028430 (+)
LOC120545547 LOC103368295 coding upstream 267415 19963771 ~ 19970112 (+)
hspa5 hspa5 coding downstream 21559 20262775 ~ 20266809 (+)
rgs3a rgs3,LOC102788614,LOC104953710 coding downstream 36071 20277287 ~ 20425401 (+)
znf618 znf618,LOC101485385 coding downstream 217140 20458356 ~ 20497767 (+)
trim32 trim32 coding downstream 454836 20696052 ~ 20701783 (+)
lhx3 lhx3,LOC102793556 coding downstream 1219910 21461126 ~ 21472938 (+)
G176357 fubp3,LOC106522831 non-coding upstream 146669 20089106 ~ 20090858 (+)
G176335 LOC103376127 non-coding upstream 149886 20079851 ~ 20087641 (+)
LOC120544937 NA non-coding upstream 167697 20068760 ~ 20069830 (+)
G176346 fbxw5 non-coding upstream 175543 20055289 ~ 20061984 (+)
G176289 NA non-coding upstream 331404 19883987 ~ 19906123 (+)
LOC120545553 NA non-coding downstream 195955 20437171 ~ 20440566 (+)
LOC120545557 NA non-coding downstream 256606 20497822 ~ 20499818 (+)
G176477 NA non-coding downstream 259250 20500466 ~ 20502348 (+)
G176507 NA non-coding downstream 695590 20936806 ~ 20937292 (+)
G176542 NA non-coding downstream 910051 21151267 ~ 21154855 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 322847 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 835148 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 1513742 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 1579908 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 1586458 18635026 ~ 18651069 (+)
pappaa pappa other downstream 274131 20515347 ~ 20620786 (+)
G176526 NA other downstream 705468 20946684 ~ 20947055 (+)
G176753 NA other downstream 2037664 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2255197 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 2290692 22531908 ~ 22537337 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020012 golga2 coding CM030127.1 CM030127.1 6307533 ~ 6328630 (-)