LOC120545553


Basic Information

Item Value
gene id LOC120545553
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20437171 ~ 20440566 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU238842
ATTACAATGTTGCCATGTGTTTTTAGTCTGTTATTCAGTTTGTTGTCTCCCCAGTGTCAACATTTCCAGCCTTATCCCTAGCaaagagaaatatTTGCTCAGCAACCTTCAATCCAAACTTGGTTGTAGTTTATCTTCCATCACTAAGAATGTGGTGACTGATGGCGATGATGAGCTGAAGGGGTTTTCAGCGGTTCCTATCTTGGCAGTGAGTCGTACAACATCTGTAAACTGGATCTCCCTGAGGATTTGGTACGTCAGCCAAGTCTGTACAAGTTAATGCAGAAAGCAGGGGCTCAAAGCCAGGGCTGTGTACGGACACCAGatttcagcacacacacagaatggacAGATTGCTCACCGTAAGGAGACAGTTTATTGAAGACTCCACCTATAAGTAATTTCTGACTGTTGGTGctgaaaacaaaccaacaaaccatggtatctttcttttttatttgtaaaatgtTAAGCAAATATTTCCATGAGGCAACCACATGTCTGTAAAAGACACTCAGACAAAGGAGGGGTCTAACCTCTGGATGGTAACACCCACTAAGAGCAGCTATGGATTTGTTGAGGCAGGTTACTGTCTCATGTATGAATGGCTTGtttccctcctctctttctgtttgtctcaTCATTTAGGGTGGTCGGTGGGCAGGCTTTGGTTAAGGAGTGGCGCTGTCATACAGGATCAGAGGCTGACATGTCAACAGCTGTTCACTGTTGGCTTTAGGCCACATCCTGTGATTTCAGACAATAATTCTTTAATGATGCATTTATAGGCTGCCAGATAAAAATGGATAATATTTTTGGTGTAAAAATAGACCAAGAAAGGAGGGGTTGGTTGTAAAAGAGGAAGGGGCACTTAAAGCAGAACATCTGAATTCAAGGTCCAGATAGAGTGGGTCAGGAAAGGACACAATACAGCATACTGCACTATCAAACTTAAAGGAAAATGATTTGTTCTTAGTAGTATCTATGATTCAGGAGTACATTATACCAGTTTATTGTATAAATCAGTGCTGGGCCAACTCCTTTTCTAATATActgtaaatctaaatgttagcgtgcttatgaaataaacaattatATGGCTGGAATTCTCCTCACAGTGCTTTTATTTCTTGGTGTATCTTGTAAGTGCTTTGTGTTTGGCAAGTTATCTTTCTAAACGTCACAATTAATAATGTCAAACAAGATGAATAATACTGTATTTCCAAATATCCACAAATCAAAGTCCCACTTAGTTATGAATTTAATATTGCATGTTAGCTACACAATCAATTTATTTTTCCACATTGTTGAACACGTTAACACAGCAAAAAC
>XR_005636708.1
ATTACAATGTTGCCATGTGTTTTTAGTCTGTTATTCAGTTTGTTGTCTCCCCAGTGTCAACATTTCCAGCCTTATCCCTAGCaaagagaaatatTTGCTCAGCAACCTTCAATCCAAACTTGGTTGTAGTTTATCTTCCATCACTAAGAATGTGGTGACTGATGGCGATGATGAGCTGAAGGGGTTTTCAGCGGTTCCTATCTTGGCAGTGAGTCGTACAACATCTGTAAACTGGATCTCCCTGAGGATTTGGTACGTCAGCCAAGTCTGTACAAGTTAATGCAGAAAGCAGGGGCTCAAAGCCAGGGCTGTGTACGGACACCAGatttcagcacacacacagaatggacAGATTGCTCACCGTAAGGAGACAGTTTATTGAAGACTCCACCTATAAGTAATTTCTGACTGTTGGTGctgaaaacaaaccaacaaaccatggtatctttcttttttatttgtaaaatgtTAAGCAAATATTTCCATGAGGCAACCACATGTCTGTAAAAGACACTCAGACAAAGGAGGGGTCTAACCTCTGGATGGTAACACCCACTAAGAGCAGCTATGGATTTGTTGAGGCAGGTTACTGTCTCATGTATGAATGGCTTGtttccctcctctctttctgtttgtctcaTCATTTAGGGTGGTCGGTGGGCAGGCTTTGGTTAAGGAGTGGCGCTGTCATACAGGATCAGAGGCTGACATGTCAACAGCTGTTCACTGTTGGCTTTAGGCCACATCCTGTGATTTCAGACAATAATTCTTTAATGATGCATTTATAGGCTGCCAGATAAAAATGGATAATATTTTTGGTGTAAAAATAGACCAAGAAAGGAGGGGTTGGTTGTAAAAGAGGAAGGGGCACTTAAAGCAGAACATCTGAATTCAAGGTCCAGATAGAGTGGGTCAGGAAAGGACACAATACAGCATACTGCACTATCAAACTTAAAGGAAAATGATTTGTTCTTAGTAGTATCTATGATTCAGGAGTACATTATACCAGTTTATTGTATAAATCAGTGCTGGGCCAACTCCTTTTCTAATATActgtaaatctaaatgttagcgtgcttatgaaataaacaattatATGGCTGGAA
>XR_005636709.1
CCCAGTGTCAACATTTCCAGCCTTATCCCTAGCGTGAGTTGCGTTCTCAGTGTTCATGaaagagaaatatTTGCTCAGCAACCTTCAATCCAAACTTGGTTGTAGTTTATCTTCCATCACTAAGAATGTGGTGACTGATGGCGATGATGAGCTGAAGGGGTTTTCAGCGGTTCCTATCTTGGCAGTGAGTCGTACAACATCTGTAAACTGGATCTCCCTGAGGATTTGGTACGTCAGCCAAGTCTGTACAAGTTAATGCAGAAAGCAGGGGCTCAAAGCCAGGGCTGTGTACGGACACCAGatttcagcacacacacagaatggacAGATTGCTCACCGTAAGGAGACAGTTTATTGAAGACTCCACCTATAAGTAATTTCTGACTGTTGGTGctgaaaacaaaccaacaaaccatggtatctttcttttttatttgtaaaatgtTAAGCAAATATTTCCATGAGGCAACCACATGTCTGTAAAAGACACTCAGACAAAGGAGGGGTCTAACCTCTGGATGGTAACACCCACTAAGAGCAGCTATGGATTTGTTGAGGCAGGTTACTGTCTCATGTATGAATGGCTTGtttccctcctctctttctgtttgtctcaTCATTTAGGGTGGTCGGTGGGCAGGCTTTGGTTAAGGAGTGGCGCTGTCATACAGGATCAGAGGCTGACATGTCAACAGCTGTTCACTGTTGGCTTTAGGCCACATCCTGTGATTTCAGACAATAATTCTTTAATGATGCATTTATAGGCTGCCAGATAAAAATGGATAATATTTTTGGTGTAAAAATAGACCAAGAAAGGAGGGGTTGGTTGTAAAAGAGGAAGGGGCACTTAAAGCAGAACATCTGAATTCAAGGTCCAGATAGAGTGGGTCAGGAAAGGACACAATACAGCATACTGCACTATCAAACTTAAAGGAAAATGATTTGTTCTTAGTAGTATCTATGATTCAGGAGTACATTATACCAGTTTATTGTATAAATCAGTGCTGGGCCAACTCCTTTTCTAATATActgtaaatctaaatgttagcgtgcttatgaaataaacaattatATGGCTGGAA

Function

GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238842 True 1332 lncRNA 0.39 3 20437171 20440566
XR_005636708.1 False 1106 lncRNA 0.41 3 20437171 20440340
XR_005636709.1 False 1082 lncRNA 0.41 3 20437220 20440340

Neighbor

gene id symbol gene type direction distance location
rgs3a rgs3,LOC102788614,LOC104953710 coding upstream 11770 20277287 ~ 20425401 (+)
hspa5 hspa5 coding upstream 170362 20262775 ~ 20266809 (+)
dnm1a dnm1 coding upstream 201164 20181745 ~ 20236007 (+)
bbln clg14h9orf16,LOC103376136,LOC106518230,LOC103028983 coding upstream 266426 20167927 ~ 20170745 (+)
traf2b traf2 coding upstream 386948 20037864 ~ 20050223 (+)
znf618 znf618,LOC101485385 coding downstream 17790 20458356 ~ 20497767 (+)
trim32 trim32 coding downstream 255486 20696052 ~ 20701783 (+)
lhx3 lhx3,LOC102793556 coding downstream 1020560 21461126 ~ 21472938 (+)
LOC120544873 cunh9orf69,c14h9orf69,c12h9orf69,csgr02h9orf69 coding downstream 1066914 21507480 ~ 21509631 (+)
LOC120545487 nacc2 coding downstream 1072607 21513173 ~ 21543255 (+)
G176410 NA non-coding upstream 195955 20237527 ~ 20241216 (+)
G176357 fubp3,LOC106522831 non-coding upstream 346313 20089106 ~ 20090858 (+)
G176335 LOC103376127 non-coding upstream 349530 20079851 ~ 20087641 (+)
LOC120544937 NA non-coding upstream 367341 20068760 ~ 20069830 (+)
G176346 fbxw5 non-coding upstream 375187 20055289 ~ 20061984 (+)
LOC120545557 NA non-coding downstream 57256 20497822 ~ 20499818 (+)
G176477 NA non-coding downstream 59900 20500466 ~ 20502348 (+)
G176507 NA non-coding downstream 496240 20936806 ~ 20937292 (+)
G176542 NA non-coding downstream 710701 21151267 ~ 21154855 (+)
G176559 NA non-coding downstream 957081 21397647 ~ 21399003 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 522491 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 1034792 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 1713386 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 1779552 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 1786102 18635026 ~ 18651069 (+)
pappaa pappa other downstream 74781 20515347 ~ 20620786 (+)
G176526 NA other downstream 506118 20946684 ~ 20947055 (+)
G176753 NA other downstream 1838314 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2055847 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 2091342 22531908 ~ 22537337 (+)

Expression


Co-expression Network