G176797


Basic Information

Item Value
gene id G176797
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22375668 ~ 22376537 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU239296
aTTGGGGCAGTATACTTCACAAAACTTATATCTCTGCTCAACATAAGTAACAATGTGTAGTCCACCCATGTGGGGGGTGTGAAATAATACTGTATAATTGACACAGGGCACTAACCTGCTTTTGAATGAGGCATCAGGGTCCTCAGATCTTGCATCAAGTGTCTCGTTCTGAAGTTAATGCCTCTTGAGGAGAAAATGAGAACCCTTTCCTTGTTGGTCCATTTACCCTGTTCAAGATAATTCAACGAAACCGGTGGTGGAATCGTGACTTCATTTTTCTTCTCCTGTTCGGCTTCTAACGGTGCTTCAGCTTTATCTACTACAAATTTCCctttctttgcctttttattAACAGGAGCCTGTCCTCCACGTTTTCTCTTGAACGCCGACATGTTTGTACGCCGATACAAAATCTCGCGTAGAATCTATCCAACTCAAACACACGTGCGGATAGAGCAGAGGAGGAGACCCCTAGTGGCGCGGAGGTGGTAGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU239296 True 493 lncRNA 0.44 2 22375668 22376537

Neighbor

gene id symbol gene type direction distance location
rad1 rad1 coding upstream 2877 22369167 ~ 22372791 (+)
ctif ctif coding upstream 147784 22168378 ~ 22227884 (+)
shc3 shc3,LOC102305817 coding upstream 288687 22056040 ~ 22086981 (+)
sema4d sema4d coding upstream 321627 22012935 ~ 22054041 (+)
LOC120545760 snca,LOC104940963,LOC100691213,LOC101468074,LOC107374679,LOC103142753,LOC102228921 coding upstream 413003 21950258 ~ 21962665 (+)
dnajc21 dnajc21 coding downstream 576 22377113 ~ 22384622 (+)
nedd4l nedd4l,LOC107584553 coding downstream 47045 22423582 ~ 22471548 (+)
esm1 esm1,LOC102788147 coding downstream 435581 22812118 ~ 22814146 (+)
arhgap24 arhgap24,LOC102789489 coding downstream 447763 22824300 ~ 22892523 (+)
ptpn13 ptpn13 coding downstream 560167 22936704 ~ 22984920 (+)
G176752 smad7 non-coding upstream 81084 22277694 ~ 22294584 (+)
G176723 NA non-coding upstream 317773 22057687 ~ 22057895 (+)
G176704 NA non-coding upstream 403225 21972109 ~ 21972443 (+)
G176703 NA non-coding upstream 403683 21971638 ~ 21971985 (+)
G176702 NA non-coding upstream 404170 21971148 ~ 21971498 (+)
G176805 NA non-coding downstream 13727 22390264 ~ 22390687 (+)
G176808 agxt2,LOC104961017,LOC104961016,LOC103368456 non-coding downstream 19564 22396101 ~ 22399573 (+)
G176809 NA non-coding downstream 23072 22399609 ~ 22400328 (+)
G176810 NA non-coding downstream 24033 22400570 ~ 22402064 (+)
LOC120546009 NA non-coding downstream 97828 22474365 ~ 22477715 (+)
G176753 NA other upstream 93505 22278880 ~ 22282163 (+)
G176526 NA other upstream 1428613 20946684 ~ 20947055 (+)
pappaa pappa other upstream 1754882 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 2460988 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 2973289 19380250 ~ 19402379 (+)
LOC120545252 NA other downstream 119876 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 155371 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 621716 22998253 ~ 23008834 (+)
G177094 NA other downstream 806136 23182673 ~ 23184262 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 1064446 23440983 ~ 23458605 (+)

Expression


Co-expression Network