LOC120546009


Basic Information

Item Value
gene id LOC120546009
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22474365 ~ 22477715 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU239330
CTTGGAACGGGACAACATCAAACCCAAACGCACCACACATCACCTCAAGAACCTGCTGCTCCGGACGCACAACTGGACTTTTAACTGTTTGGAAACACTCTGACAAGAAGATACGCTGTAGCGAGAGGGATGGAGCAGAGAAGAAGCTGGGAGAGTCAGAAGCAGGAGAGTGACCACTGGGTACGAATTCATGAATCCTGGAAAGAGGATCTACTTTAGAAACTTGAGGTCGCCCATCCACCAGTATTAACCTCTCCGTCTGCAGTATCTACAGTAAATATTGTCCTCTAGAGTTGTGGAGTGTGACAATggtgtttgtgtcctgtgtTTCAAACGCCATTTTCACACTAAATAGCTACAGTGTGAAACAGACCTCAGCATAGTCCTCAGTTTCCTGATTGGATTTTTATTTCTCCTTGTGTTTGTAGTCTTTTTTGTAGCTTTGTAATAgtttcctcattcattctgTAAAGcctaaaaacacatcaaggACACGTTACACCATGCTGGAGGGGCAGAGATGAAAATAGATGTGTGTTACGTACCAACATCCTACATGATCTTAAGCCTCTGAGTGTGACCCACTTTCTTTAGCGTTTGAGGTGCTAATTTGCTGCTGGAGACCTTCTCCTGTAAGTATAAATAGAAATAGAGCActcatttgttttcatgctgctGCCATTTCTTGTGTTGTCATCATTCAAACTTTTTCCAACATGTAAATGAGTCATCTACTATGATTGCACAATGGTCTTCATCCATGcaaattacataaataaagtgttttttttgtctgttgctatagaGTGAACTTGATCTATTCATGAGAAAGATGTAATAGTCATATTAAAAACCACCTTCAAACACAGTCCTGTGTACAAAGACAAGTATATATTTGCATACAAACATAGACACCGTGTCAAAATCATGGAAATGTGAGTTGAATTAACTTGACTAAAATCAATCACAAAGCATCTTGAACCAGCAACATCTCTTTAATAACAAAGATCTACTGTGTGATTACACACTGGCCATAGCTGCAAGCTGAAAACCATGTCTGCAATTTGAGTCAGGGATTCAAAAAGCAACAATGAGAGTCGAACAGAGAGGGTTATTATATGGAGACCGTTTGAGACTGCCTTTGAATAGCTGGTATGTGGTTGAGTGTGTAAGTAGGCTCTGGATTTGGTTTTACATTTCTCTCACTCAGTTTGAGCTGGACCGGTAACATATAGATCCTTGAAATGATGCCAGACATTAAAAATCTATTTAACAATCAGAATTACACCAGACAATTAAATGATAAATCAATAAATCTTCACATTTGTCAGTGAATACATTCAAATGCatactttgtgtgtgtacaaaatgtatttgtgttgtttcCAGAATAAAAAAATGAGCTTATCCTGAATCAGTAGCTTTtacgtaatgaaaagaaaacattataATAATCTAACATTAAACTGAAAATGCAATTATCTTTGTCACCTCACCCACCAAATACACGAAAATTGCCCACTCATACTGAATCCAAAACAAGACGTGTCCTCTACTGTGTGTATTTTATCAAACAACCTACTTAAAAGACATTTCCTCTATTCAATTAATAAACAAGTTCATTAATTTAATGAACTAATAGTTTGAAGACATCACCGAagtagaaaaacaataaaaactcaTCACAAATTAAAATCTCTAAGACATCACAGTTCAACACTGTCCATAAactcatcattatcatcatcatttttAAGTGTTTGTTAAATTTGTCACAGTTTTCCCAGTCTGGCTCAACGGATGCAAATTGCTGGGATAAAGACTGCTGATCTCTCACATTCCAGACGTCCCTTCCCTTATTGCTGCTATAGGGGGTTAGTGTCGCCCAAGATggttgtgactggtttaaagaaatagatagatagatggactttattaatcccaaattgGAAAATTAATCTGTTACAAGCAACAAGTAGCAAgttacaaacaagccagagctcccccccccccctcatccCTAGAATAGATaggcggtgtagccagaccatactccaatGTGAGAATAATCTGGTAATGGGAGATTACAGACTCGTGAAATAAAGTGTCTTCCAGAAATAatctcaataaaataaaatatatctcTCAAATGTTCAACACGAGATGAAGCAAAAACTCTCGCTTGTTGTGTAAAAATTGCTCTCTTCAGAGTCAAACACATCTGTCCTCTCCATCATGTGGCCTTCTGCAGCGCAAAACTTTGGACACCTTTCCGATTCCTCCTTGACAGGCCAAACTCTGCATGACGAGGTCCAGCATGAGTGAAGCAAATTATTTAAAACCCTCACCATTTCAATAAAAATTACACACGTAGTCCAAGATTCTCCTCCTATTATGACTTGCCCTTCACTGTTGGCCCAAATACTTTCTTCTTGGGTGCAGCAGAGGCTTGTTGGGGTCTGGGTTTCGGAGCAGATGCAGGCTTTTTAGGTTTGGGCTGCATGGATTTGAGGCCCAGGATCTCACAGTACTTGTTGCACTGGTGCAAAGCTTTGAACTGGTCAATAAAGGAGGTGGCACAGTTTCCTTTGAAGCCCTTAtatctaaaaagaaagaaaaaatgtatCTTTCAATTTGCATGTATCAACAATTTGCAACTATTATTGGTCTCAAAAGAAATACTCACCCT
>XR_005636771.1
CATCAAACCCAAACGCACCACACATCACCTCAAGAACCTGCTGCTCCGGACGCACAACTGGACTTTTAACTGTTTGGAAACACTCTGACAAGAAGATACGCTGTAGCGAGAGGGATGGAGCAGAGAAGAAGCTGGGAGAGTCAGAAGCAGGAGAGTGACCACTGGGTACGAATTCATGAATCCTGGAAAGAGGATCTACTTTAGAAACTTGAGGTCGCCCATCCACCAGTATTAACCTCTCCGTCTGCAGTATCTACAGTAAATATTGTCCTCTAGAGTTGTGGAGTGTGACAATggtgtttgtgtcctgtgtTTCAAACGCCATTTTCACACTAAATAGCTACAGTGTGAAACAGACCTCAGCATAGTCCTCAGTTTCCTGATTGGATTTTTATTTCTCCTTGTGTTTGTAGTCTTTTTTGTAGCTTTGTAATAgtttcctcattcattctgTAAAGcctaaaaacacatcaaggACACGTTACACCATGCTGGAGGGGCAGAGATGAAAATAGATGTGTGTTACGTACCAACATCCTACATGATCTTAAGCCTCTGAGTGTGACCCACTTTCTTTAGCGTTTGAGGTGCTAATTTGCTGCTGGAGACCTTCTCCTGTAAGTATAAATAGAAATAGAGCActcatttgttttcatgctgctGCCATTTCTTGTGTTGTCATCATTCAAACTTTTTCCAACATGTAAATGAGTCATCTACTATGATTGCACAATGGTCTTCATCCATGcaaattacataaataaagtgttttttttgtctgtt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko00350 Tyrosine metabolism
ko00360 Phenylalanine metabolism
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU239330 True 2689 lncRNA 0.39 2 22474365 22477715
XR_005636771.1 False 783 lncRNA 0.41 2 22474380 22475824

Neighbor

gene id symbol gene type direction distance location
nedd4l nedd4l,LOC107584553 coding upstream 2817 22423582 ~ 22471548 (+)
dnajc21 dnajc21 coding upstream 89743 22377113 ~ 22384622 (+)
rad1 rad1 coding upstream 101574 22369167 ~ 22372791 (+)
ctif ctif coding upstream 246481 22168378 ~ 22227884 (+)
shc3 shc3,LOC102305817 coding upstream 387384 22056040 ~ 22086981 (+)
esm1 esm1,LOC102788147 coding downstream 334403 22812118 ~ 22814146 (+)
arhgap24 arhgap24,LOC102789489 coding downstream 346585 22824300 ~ 22892523 (+)
ptpn13 ptpn13 coding downstream 458989 22936704 ~ 22984920 (+)
LOC120545187 NA coding downstream 507489 22985204 ~ 22989316 (+)
sdad1 sdad1 coding downstream 512439 22990154 ~ 22996841 (+)
G176810 NA non-coding upstream 72301 22400570 ~ 22402064 (+)
G176809 NA non-coding upstream 74037 22399609 ~ 22400328 (+)
G176808 agxt2,LOC104961017,LOC104961016,LOC103368456 non-coding upstream 74792 22396101 ~ 22399573 (+)
G176805 NA non-coding upstream 83678 22390264 ~ 22390687 (+)
G176797 NA non-coding upstream 97828 22375668 ~ 22376537 (+)
LOC120545780 NA non-coding downstream 60235 22537950 ~ 22540359 (+)
G176890 lman1 non-coding downstream 80956 22558671 ~ 22560599 (+)
G176898 NA non-coding downstream 167321 22645036 ~ 22646108 (+)
G176899 hcn1,LOC100711592,LOC102787639 non-coding downstream 168527 22646242 ~ 22648263 (+)
G176900 NA non-coding downstream 171366 22649081 ~ 22649318 (+)
G176753 NA other upstream 192202 22278880 ~ 22282163 (+)
G176526 NA other upstream 1527310 20946684 ~ 20947055 (+)
pappaa pappa other upstream 1853579 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 2559685 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 3071986 19380250 ~ 19402379 (+)
LOC120545252 NA other downstream 18698 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 54193 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 520538 22998253 ~ 23008834 (+)
G177094 NA other downstream 704958 23182673 ~ 23184262 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 963268 23440983 ~ 23458605 (+)

Expression


Co-expression Network