LOC120545252


Basic Information

Item Value
gene id LOC120545252
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22496413 ~ 22524405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU239368
GAAACAGCGCCCCTCTGGGTTGTACGGTCAAAGCTGGCGTTGCATCCTTACAGGTGGTGAAGACGGGACGCAAAATTACCATagacgaatcccactatggccacgccaagacccgccctacgaagcagctcgattggttgggattaggcatttcacctcgagtggttaaggttagggttaggggattggtcaggagataggacctgtacgtgtaagcatggacgcctggccaattgtagtgtgtgaatgatattgaagggcgggtcttggcgtggccatagtgggattcgtaatatcgcagACGGGACAGGTGAAGTTGTTTACTGTTTGATTACTGTCAAACAATCTGACGCGGTCACTATGATGCTACTGTAAAACTGAATGGACAATACTTAGGAAGAGAAAATACAAAGTAAAATGTGAAGCCAGTCATACTTTggcttcaaaacaaaacaacaatagTTTATATTTACATGAAACAACAGCCTGTTTTTTAGTGTTGCCTGTTAACGTTAGCCGTGTTGTTGTGAGACtagttagctagcagctagttctgtgagcaaaaaaacaaataacctTCTGAGCAACAAGTGGAACGATAAGGGCATTATATGACATGGATATGGACTGTATACTTCAAGGACTTGCTTCAACGGTCATTTGATGGGAAAGAAGAGCATCGAGAGCCTACCTGAACTGCAGGAGACAAACCATGACAGTGACTACCTCACACCCTTAGAAACAGCTGGGGTCACAGAGCAACTGATGGAGGCACTGATGCAACAAAAGAACCAGGAACAGACGACGCCACAGACTGCAGACCGGCTGCTTCGGCTGCAGAGTGGCTGGAGAGAAGAGGACAGAGACAAATATCTCAGAGAGATGTCCAAGCTTCTTCTTCTGGCTTTGAAACTGCAAGACAATGAATCCACCTGAATACAAGACAGTCATCATTATCAACTAAACGTGCTGTAATCACATATTCAcactgtatatttttttctgctgtaaGAGTATGCTGGAAAGCAAATTGAAGATTATTTTATCAGTAATTTAATATTTCTAATATGCATCATGCAGCAGTTTGATTACAGACTGACAGGATAAGGTTATGTTGAA
>XM_039779438.1
ACGGGACAGGTGAAGTTGTTTACTGTTTGATTACTGTCAAACAATCTGACGCGGTCACTATGATGCTACTGTAAAACTGAATGGACAATACTTAGGAAGAGAAAATACAAAGTAAAATGTGAAGCCAGTCATACTTTggcttcaaaacaaaacaacaatagTTTATATTTACATGAAACAACAGCCTGTTTTTTAGTGTTGCCTGTTAACGTTAGCCGTGTTGTTGTGAGACtagttagctagcagctagttctgtgagcaaaaaaacaaataacctTCTGAGCAACAAGTGGAACGATAAGGGCATTATATGACATGGATATGGACTGTATACTTCAAGGACTTGCTTCAACGACCGGTGTGGCCACTTTTTATTATTCTGGCTACAATACCGTGTGTGTTGTACTGCTCAGAGAGTCCTGCAGCTGTCGTTGGCAAAATGTATCCACGGGGTAACCACTGGGCAGTAGGTCATTTGATGGGAAAGAAGAGCATCGAGAGCCTACCTGAACTGCAGGAGACAAACCATGACAGTGACTACCTCACACCCTTAGAAACAGCTGGGGTCACAGAGCAACTGATGGAGGCACTGATGCAACAAAAGAACCAGGAACAGACGACGCCACAGACTGCAGACCGGCTGCTTCGGCTGCAGAGTGGCTGGAGAGAAGAGGACAGAGACAAATATCTCAGAGAGATGTCCAAGCTTCTTCTTCTGGCTTTGAAACTGCAAGACAATGAATCCACCTGAATACAAGACAGTCATCATTATCAACTAAACGTGCTGTAATCACATATTCAcactgtatatttttttctgctgtaaGAGTATGCTGGAAAGCAAATTGAAGATTATTTTATCAGTAATTTAATATTTCTAATATGCATCATGCAGCAGTTTGATTACAGACTGACAGGATAAGGTTATGTTGAATGCATTGAGATGCTGAATAAATTTAACATTGCGATAA
>XM_039779439.1
cccgctgacgtgcagcttgTATCAGGAGGGGCGTTTAACgttcatcattagtcatttctATCAAAGGCATCGGGGAGTGTAACTTCAACAAGTCTGCAGCTGGAGCACTTTTACCCCGCTGCAACGTCGGCTcacacaacaaaatatcaacTATGGTGGAGGTTTTCTAAAGTAAGATCAAGCTGAATAACTTCAACTTAGGATTCAAATACTGCTATTTAGATCTGACCTTTTCTCTGATAACATGGGCGGAGTGTGCTTGTGCTTTTTATGGACTTGCAGACCGGTGTGGCCACTTTTTATTATTCTGGCTACAATACCGTGTGTGTTGTACTGCTCAGAGAGTCCTGCAGCTGTCGTTGGCAAAATGTATCCACGGGGTAACCACTGGGCAGTAGGTCATTTGATGGGAAAGAAGAGCATCGAGAGCCTACCTGAACTGCAGGAGACAAACCATGACAGTGACTACCTCACACCCTTAGAAACAGCTGGGGTCACAGAGCAACTGATGGAGGCACTGATGCAACAAAAGAACCAGGAACAGACGACGCCACAGACTGCAGACCGGCTGCTTCGGCTGCAGAGTGGCTGGAGAGAAGAGGACAGAGACAAATATCTCAGAGAGATGTCCAAGCTTCTTCTTCTGGCTTTGAAACTGCAAGACAATGAATCCACCTGAATACAAGACAGTCATCATTATCAACTAAACGTGCTGTAATCACATATTCAcactgtatatttttttctgctgtaaGAGTATGCTGGAAAGCAAATTGAAGATTATTTTATCAGTAATTTAATATTTCTAATATGCATCATGCAGCAGTTTGATTACAGACTGACAGGATAAGGTTATGTTGAATGCATTGAGATGCTGAATAAATTTAACATTGCGATAA
>XM_039779440.1
AAGAGAAGCTGCTTAACACTTTAAGGGGATGCACTACAGACCGGTGTGGCCACTTTTTATTATTCTGGCTACAATACCGTGTGTGTTGTACTGCTCAGAGAGTCCTGCAGCTGTCGTTGGCAAAATGTATCCACGGGGTAACCACTGGGCAGTAGGTCATTTGATGGGAAAGAAGAGCATCGAGAGCCTACCTGAACTGCAGGAGACAAACCATGACAGTGACTACCTCACACCCTTAGAAACAGCTGGGGTCACAGAGCAACTGATGGAGGCACTGATGCAACAAAAGAACCAGGAACAGACGACGCCACAGACTGCAGACCGGCTGCTTCGGCTGCAGAGTGGCTGGAGAGAAGAGGACAGAGACAAATATCTCAGAGAGATGTCCAAGCTTCTTCTTCTGGCTTTGAAACTGCAAGACAATGAATCCACCTGAATACAAGACAGTCATCATTATCAACTAAACGTGCTGTAATCACATATTCAcactgtatatttttttctgctgtaaGAGTATGCTGGAAAGCAAATTGAAGATTATTTTATCAGTAATTTAATATTTCTAATATGCATCATGCAGCAGTTTGATTACAGACTGACAGGATAAGGTTATGTTGAATGCATTGAGATGCTGAATAAATTTAACATTGCGATAA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU239368 True 1119 TUCP 0.44 3 22496413 22524368
XM_039779438.1 False 971 mRNA 0.41 4 22496714 22524405
XM_039779439.1 False 899 mRNA 0.43 3 22522848 22524405
XM_039779440.1 False 656 mRNA 0.43 4 22515469 22524405

Neighbor

gene id symbol gene type direction distance location
nedd4l nedd4l,LOC107584553 coding upstream 24865 22423582 ~ 22471548 (+)
dnajc21 dnajc21 coding upstream 111791 22377113 ~ 22384622 (+)
rad1 rad1 coding upstream 123622 22369167 ~ 22372791 (+)
ctif ctif coding upstream 268529 22168378 ~ 22227884 (+)
shc3 shc3,LOC102305817 coding upstream 409432 22056040 ~ 22086981 (+)
esm1 esm1,LOC102788147 coding downstream 287713 22812118 ~ 22814146 (+)
arhgap24 arhgap24,LOC102789489 coding downstream 299895 22824300 ~ 22892523 (+)
ptpn13 ptpn13 coding downstream 412299 22936704 ~ 22984920 (+)
LOC120545187 NA coding downstream 460799 22985204 ~ 22989316 (+)
sdad1 sdad1 coding downstream 465749 22990154 ~ 22996841 (+)
LOC120546009 NA non-coding upstream 18698 22474365 ~ 22477715 (+)
G176810 NA non-coding upstream 94349 22400570 ~ 22402064 (+)
G176809 NA non-coding upstream 96085 22399609 ~ 22400328 (+)
G176808 agxt2,LOC104961017,LOC104961016,LOC103368456 non-coding upstream 96840 22396101 ~ 22399573 (+)
G176805 NA non-coding upstream 105726 22390264 ~ 22390687 (+)
LOC120545780 NA non-coding downstream 13545 22537950 ~ 22540359 (+)
G176890 lman1 non-coding downstream 34266 22558671 ~ 22560599 (+)
G176898 NA non-coding downstream 120631 22645036 ~ 22646108 (+)
G176899 hcn1,LOC100711592,LOC102787639 non-coding downstream 121837 22646242 ~ 22648263 (+)
G176900 NA non-coding downstream 124676 22649081 ~ 22649318 (+)
G176753 NA other upstream 214250 22278880 ~ 22282163 (+)
G176526 NA other upstream 1549358 20946684 ~ 20947055 (+)
pappaa pappa other upstream 1875627 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 2581733 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 3094034 19380250 ~ 19402379 (+)
G176870 cplx4 other downstream 7503 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 473848 22998253 ~ 23008834 (+)
G177094 NA other downstream 658268 23182673 ~ 23184262 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 916578 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 1199073 23723478 ~ 23727242 (+)

Expression


Co-expression Network