G177039 (scarb2,LOC104955650,LOC107395254)


Basic Information

Item Value
gene id G177039
gene name scarb2,LOC104955650,LOC107395254
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23104642 ~ 23116716 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU239630
GCTTAAATAAGGAAGACACATTTACTCAaactacttttatttttgtgtacACAGTACTAACAGTCAGCGTTTCAAAACAAGCTGACAATAAGAACAAGTGGTTATAGCAGTAACGATAATTTCAGAAAATACAATCTGTTATCAAAGTATGGCACAAAGTAGCCTAGTATGGTGGTTCTTTCTGTGTTTTGGATTTAccaactcaacaaaataattTATCCTTTTTAACCACAACACTAATATTGTGTAatactgtgttttttgtgtaaaaaaGCTTGCTTTATCCATTCATTCCCCTTCTAATGAAATTATGATACATTATGCACTCTCATGAATTTCTTCTAGTTTCTTATTGTACATAACTGATTAAAGTATACATCAAACACAAATAGTAAAATCAAATAAGGAAGCAGAAATCCATAAATGAAACTTGTTACAGCTTCTCTGCTATCGTCGTCGATATATTTAATGTTGATTATTGCAGTGCATGTAATGACGAGGTGGTATGAAGGAACTCATTTATCCTTAGATGTTACAACTAAGAATAAGCACAGAAATAAAAGCTGGGCTCAACGCAGTTCATAAGTAGTAATTCTGCAGCATTTTCTATATTACATTAAATGGCACCTGAAATCAATTGTTTTCACCAGCCTCGAGTGAGAAAGCTGTGGCTCTGCACAACAATCTATCATTCAAGCAAAGTGTTTTCAAAGTGCAGTTTGACCCTGCCGCCAACTATAAAAACTCATAGCAGTTTCATGCTTATTTTTGTTTGGTATCTGGAAGAAAACGATATATATACGCGAGAGTAGATGTGTTGGTTTGACATGATGTTCTTTTCACAAAATTATGTGAAAACTATAAAAGGCAAAATAAATTCAGTAACATAGATTCTTTTAAAGGCACAACTAGAGTGTTTCTTCATATTGAACCTTCATGAGTTTTTAGTTGCAATGGCTTGACACCTGACATGAAGTCTTTCACAAACATTAAAGAAAAGGTTTGTTTGGTGTCATATACAGCACCAACAATATCTAAGTAAGGCCTTCAACAAAGCACATTTTGAAATGATAATAAGCTGAATTCTATTTTTTAAATGGCGGTTAATGTTACGTGAGGAGTTATGTAGGACAAAAATAATGTACACATATTCTGTAGTGTATGAATCATTATTTCAACCACAAAATCCTGTCATATTCAGGCCTTTATATGGCTGATAAAGGTGTCGATCATTATACTACTAGAAGACAACTGTGAAGCTTTAACTTAGCATGTTCCTCATTCAAACATTTCTACATACAAAAATATACTCTGAAGGTTTCTCAATTGCGGTGCTAACAATGTTTATAGATATCCCTCTAAATACAGTGCATGAATAGAAAACACTAATGAGCAATGGCAAGGTTTTGTAACATTTGGTTTAGGACGAAATGCAAATGAAACATAGTAATACTGAATTGATTAAATTGCTGCACAAAGAGAAGCCTTGCAGTATGCTTTGCTTCTCTCCCTATCTTTAATAGTGATTGATTGTATCTAAGCAGAGGACCCCTGAGAGTGACGTATGATATCTAAAAATCTCACGATTTATGGACTTCATTACCCTGGTCCCAAATTACCCTCTATGCCCTGTAACATAGTAATCAGTCAGTAAAATCTGAAGGCACAATCGAGGTAAACAGAAAATAAGGTGAGGCCACAGCACTAAAATCAAAATGATCCCACAGGGGTGGGTTTGTTTGTTTCGGATCACCACAAAGTAGGCTCTCCATTTTTACTCATTTGAGAACTGCAGCTTTCAGCAACTGATTTAACCAAACAGCAAAAAGTAACCCTCGACAGTGTTTTTGAATGAATGTCAAACTTTTTCTGGGAAAATATTGTGCTAGACCTGGACTTTGGGTAGCTCTGCATGGCTAAAATTAATACATACAGGACAGTATGTTTGaaactaaaaacatgttttcctcCTCTAGCCCTCACCCCCCACCCCAAAGATTTCCAATCATAAAGGAGATATTGACAATAATCTCTCTCCTGAAAACCCAAATCCCTATTTGTATTTCTGAGGGTTGTCGATGTACAAAGAGCCCTTCTGATCATTCTCCCCCTCCTCAAGCTTATGGGTCATCTTTAGGTGACAGACCGATATAGGTTCCATTTTGTGGATCTTCCTTTTCCTTGTCACTGACTCGAGAGTAAGAAGTGTCCTCTTCAGTGGAGGTCTCTGTTTGCGGGCCCGGACCAGAAGGATGATGAGGACTGCGAGCAGTATGGCACCCAGTCCCACAATAATGAGCGGGAAGTTGGACACTAGAGTGACAATCAGCAGCAGCTTGTGTACTCTCGCCGCAGACGCATCATCAATCACCACACTCTCATTGAGGAACATGACGGGAAAGATTGTCTCATTAAGCGTTCTAGTTTTCGGGAATCCAGAGATTCTGCTGAGCAAGATGTTTATCTGTGCTCTCTTGTTTGCACGAACAATCACTCCAGTGGTTGGGTTAAGGTCTAGGAAGGTTTGGTGATGCTGTCTTTGAGGGGACATTCCTTTAATGGCAGCCACATATTTAGCATCTCCCAGGTAAAAATGAGGAAAGGAGGCAACCACTGGGGCACCTTTCCGACAAGGACTGACTTTAAGAAGGCCAGTTCCCAGGCACTCTTGTGGGGTGACGCAGAAACCCTCATTGGCTGGGTTCTCCTCTTTGCTGGCAAAAACAGAGCGTGGCGGTGTGAAACGGTAGGCTGGGATTCCTTTCACCTCTACATCCTTCTCAAATTCCATGTGGATCGACCTGCAGAGGTCTGGAGTGAAGATGTAAATGCGTTCATTCTTGTTCAGCAGGGGATGGAAAGCACTTCCATCTGATCCATTGATGCTGTTGCTTTGGTTAGACGCCCAGAAGGTCAGCTGGCTTTGGCCTTGCCATGTTTCAACGCGGCCATAATCCATGTAGTTCTGCACCCCAGTGTGGTAGATGAATTCCCCGTTATTAGTTCCATTTTTCT
>TU239631
GCTTAAATAAGGAAGACACATTTACTCAaactacttttatttttgtgtacACAGTACTAACAGTCAGCGTTTCAAAACAAGCTGACAATAAGAACAAGTGGTTATAGCAGTAACGATAATTTCAGAAAATACAATCTGTTATCAAAGTATGGCACAAAGTAGCCTAGTATGGTGGTTCTTTCTGTGTTTTGGATTTAccaactcaacaaaataattTATCCTTTTTAACCACAACACTAATATTGTGTAatactgtgttttttgtgtaaaaaaGCTTGCTTTATCCATTCATTCCCCTTCTAATGAAATTATGATACATTATGCACTCTCATGAATTTCTTCTAGTTTCTTATTGTACATAACTGATTAAAGTATACATCAAACACAAATAGTAAAATCAAATAAGGAAGCAGAAATCCATAAATGAAACTTGTTACAGCTTCTCTGCTATCGTCGTCGATATATTTAATGTTGATTATTGCAGTGCATGTAATGACGAGGTGGTATGAAGGAACTCATTTATCCTTAGATGTTACAACTAAGAATAAGCACAGAAATAAAAGCTGGGCTCAACGCAGTTCATAAGTAGTAATTCTGCAGCATTTTCTATATTACATTAAATGGCACCTGAAATCAATTGTTTTCACCAGCCTCGAGTGAGAAAGCTGTGGCTCTGCACAACAATCTATCATTCAAGCAAAGTGTTTTCAAAGTGCAGTTTGACCCTGCCGCCAACTATAAAAACTCATAGCAGTTTCATGCTTATTTTTGTTTGGTATCTGGAAGAAAACGATATATATACGCGAGAGTAGATGTGTTGGTTTGACATGATGTTCTTTTCACAAAATTATGTGAAAACTATAAAAGGCAAAATAAATTCAGTAACATAGATTCTTTTAAAGGCACAACTAGAGTGTTTCTTCATATTGAACCTTCATGAGTTTTTAGTTGCAATGGCTTGACACCTGACATGAAGTCTTTCACAAACATTAAAGAAAAGGTTTGTTTGGTGTCATATACAGCACCAACAATATCTAAGTAAGGCCTTCAACAAAGCACATTTTGAAATGATAATAAGCTGAATTCTATTTTTTAAATGGCGGTTAATGTTACGTGAGGAGTTATGTAGGACAAAAATAATGTACACATATTCTGTAGTGTATGAATCATTATTTCAACCACAAAATCCTGTCATATTCAGGCCTTTATATGGCTGATAAAGGTGTCGATCATTATACTACTAGAAGACAACTGTGAAGCTTTAACTTAGCATGTTCCTCATTCAAACATTTCTACATACAAAAATATACTCTGAAGGTTTCTCAATTGCGGTGCTAACAATGTTTATAGATATCCCTCTAAATACAGTGCATGAATAGAAAACACTAATGAGCAATGGCAAGGTTTTGTAACATTTGGTTTAGGACGAAATGCAAATGAAACATAGTAATACTGAATTGATTAAATTGCTGCACAAAGAGAAGCCTTGCAGTATGCTTTGCTTCTCTCCCTATCTTTAATAGTGATTGATTGTATCTAAGCAGAGGACCCCTGAGAGTGACGTATGATATCTAAAAATCTCACGATTTATGGACTTCATTACCCTGGTCCCAAATTACCCTCTATGCCCTGTAACATAGTAATCAGTCAGTAAAATCTGAAGGCACAATCGAGGTAAACAGAAAATAAGGTGAGGCCACAGCACTAAAATCAAAATGATCCCACAGGGGTGGGTTTGTTTGTTTCGGATCACCACAAAGTAGGCTCTCCATTTTTACTCATTTGAGAACTGCAGCTTTCAGCAACTGATTTAACCAAACAGCAAAAAGTAACCCTCGACAGTGTTTTTGAATGAATGTCAAACTTTTTCTGGGAAAATATTGTGCTAGACCTGGACTTTGGGTAGCTCTGCATGGCTAAAATTAATACATACAGGACAGTATGTTTGaaactaaaaacatgttttcctcCTCTAGCCCTCACCCCCCACCCCAAAGATTTCCAATCATAAAGGAGATATTGACAATAATCTCTCTCCTGAAAACCCAAATCCCTATTTGTATTTCTGAGGGTTGTCGATGTACAAAGAGCCCTTCTGATCATTCTCCCCCTCCTCAAGCTTATGGGTCATCTTTAGGTGACAGACCGATATAGGTTCCATTTTGTGGATCTTCCTTTTCCTTGTCACTGACTCGAGAGTAAGAAGTGTCCTCTTCAGTGGAGGTCTGTTGTTGCGGGCCCGGACCAGAAGGATGATGAGGACTGCGAGCAGTATGGCACCCAGTCCCACAATAATGAGCGGGAAGTTGGACACTAGAGTGACAATCAGCAGCAGCTTGTGTACTCTCGCCGCAGACGCATCATCAATCACCACACTCTCATTGAGGAACATGACGGGAAAGATTGTCTCATTAAGCGTTCTAGTTTTCGGGAATCCAGAGATTCTGCTGAGCAAGATGTTTATCTGTGCTCTCTTGTTTGCACGAACAATCACTCCAGTGGTTGGGTTAAGGTCTAGGAAGGTTTGGTGATGCTGTCTTTGAGGGGACATTCCTTTAATGGCAGCCACATATTTAGCATCTCCCAGGTAAAAATGAGGAAAGGAGGCAACCACTGGGGCACCTTCCGACAAGGACTGACTTTAAGAAGGCCAGTTCCCAGGCACTCTTGTGGGGTGACGCAGAAACCCTCATTGGCTGGGTTCTCCTCTTTGCTGGCAAAAACAGAGCGTGGCGGTGTGAAACGGTAGGCTGGGATTCCTTTCACCTCTACATCCTTCTCAAATTCCATGTGGATCGACCTGCAGAGGTCTGGAGTGAAGATGTAAATGCGTTCATTCTTGTTCAGCAGGGGATGGAAAGCACTTCCATCTGATCCATTGATGCTGTTGCTTTGGTTAGACGCCCAGAAGGTCAGCTGGCTTTGGCCTTGCCATGTTTCAACGCGGCCATAATCCATGTAGTTCTGCACCCCAGTGTGGTAGATGAATTCCCCGTTATTAGTTCCATTTTTCT

Function

symbol description
scarb2 Enables cargo receptor activity; enzyme binding activity; and protein homodimerization activity. Involved in protein targeting to lysosome and regulation of cellular carbohydrate catabolic process. Located in extracellular exosome; focal adhesion; and lysosomal membrane. Implicated in progressive myoclonus epilepsy 4.

NR:

description
PREDICTED: lysosome membrane protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239630 True 3015 lncRNA 0.39 8 23104642 23116716
TU239631 False 3014 lncRNA 0.39 8 23104642 23116716

Neighbor

gene id symbol gene type direction distance location
LOC120545462 ppef2,LOC103366113 coding upstream 16232 23074570 ~ 23088410 (+)
LOC120544950 LOC103473489,LOC103142714,LOC106917991,LOC106959058,LOC108231074 coding upstream 68546 23015127 ~ 23036096 (+)
sdad1 sdad1 coding upstream 107801 22990154 ~ 22996841 (+)
LOC120545187 NA coding upstream 115326 22985204 ~ 22989316 (+)
ptpn13 ptpn13 coding upstream 119722 22936704 ~ 22984920 (+)
amacr amacr coding downstream 39122 23155838 ~ 23165201 (+)
slc45a2 slc45a2 coding downstream 52771 23169487 ~ 23202930 (+)
nxnl2 nxnl2 coding downstream 106971 23223687 ~ 23226613 (+)
csgalnact1a LOC102302787 coding downstream 113121 23229837 ~ 23259542 (+)
plpp1a plpp1,LOC102797153 coding downstream 146756 23263472 ~ 23277088 (+)
G176974 NA non-coding upstream 170997 22893156 ~ 22933645 (+)
G176908 NA non-coding upstream 357316 22747108 ~ 22747326 (+)
G176906 LOC107085810,LOC102226223,LOC103473886,LOC106958946,LOC106918003,LOC105921164 non-coding upstream 390145 22713906 ~ 22714497 (+)
G176905 hcn1,LOC108278484,LOC106958946 non-coding upstream 398518 22705726 ~ 22706124 (+)
G176904 hcn1,LOC104948050,LOC106560798,LOC107749006,LOC107662227,LOC103390262 non-coding upstream 442824 22661584 ~ 22661818 (+)
G177043 NA non-coding downstream 17933 23134649 ~ 23134887 (+)
G177079 NA non-coding downstream 25013 23141729 ~ 23141935 (+)
G177089 NA non-coding downstream 49843 23166559 ~ 23171678 (+)
G177091 NA non-coding downstream 55536 23172252 ~ 23177502 (+)
G177093 NA non-coding downstream 63984 23180700 ~ 23181267 (+)
klhl8 klhl8 other upstream 95808 22998253 ~ 23008834 (+)
G176870 cplx4 other upstream 567305 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 580237 22496413 ~ 22524405 (+)
G176753 NA other upstream 822479 22278880 ~ 22282163 (+)
G176526 NA other upstream 2157587 20946684 ~ 20947055 (+)
G177094 NA other downstream 65957 23182673 ~ 23184262 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 324267 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 606762 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 607450 23724166 ~ 23724245 (+)
LOC120546141 NA other downstream 609258 23725974 ~ 23726052 (+)

Expression


Co-expression Network