lhx3 (lhx3,LOC102793556)


Basic Information

Item Value
gene id lhx3
gene name lhx3,LOC102793556
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21461126 ~ 21472938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778765.1
GGGGCTCCTGATACACAAATTTGACAACACTTGCCTGGTCTGTGAGTGTGAATAGATCACAAATAAGACAGATTTGCATTCATGTGAGCGTAAATCATGAGCAATGGATGGACATGGTGAGCGCAAGTCTTTAAAAGAGGGACCCAATAACACGGAGATGCTCCTTGCTTTGCTCTCGCACAGTGAGGAGCTACGGAAAGAAATCCCAGTATGTGCAGGCTGCAGTCAACACATCGTGGACCGCTTTATCCTCAAAGTGCTGGATCGCCACTGGCACAGCAAGTGCCTGAAATGCAGCGACTGCCAGGCGCAACTGTCGGAGAAGTGCTTCAGCAGGGGCGACAGCGTGTACTGCAAAGAGGATTTCTTCAAGAGATTCGGGACCAAATGCGCAGCCTGTCAGCAGGGGATACCGCCCACACAGGTGGTGAGGAGAGCGCAGGACTTTGTTTACCACCTGCACTGTTTTGCCTGCATCGTGTGCAAGAGGCAACTGGCCACAGGTGACGAGTACTATCTGATGGAGGACAGCAGGCTGGTGTGTAAGGCCGACTACGAGACCGCCAAACAGAGAGAAGCAGACTCGACTGCAAAAAGGCCACGAACAACCATCACTGCTAAACAGCTGGAAACGCTGAAGAACGCTTACAATAATTCTCCCAAACCTGCCCGACATGTCCGGGAGCAGCTATCATCAGAGACGGGCCTGGATATGCGGGTTGTGCAGGTTTGGTTTCAGAACAGGCGAGCTAAAGAGAAAAGGCTGAAGAAAGACGCCGGTCGGCAGAGGTGGGGGCAGTATTTCCGCAACATGAAGAGGTCACGAGGAAGCTCCAAATCGGACAAGGACAGCATCCAGGAGGAGGGCTTGGACAGTGACGCCGAGGTGTCCTTTACAGATGAACCACCAATGTCAGAGCTTGGCCTCACTAACGGCATCTACAGCAGCCTGAGTGAGTCCTCCCCAGGCATTGGGGGCCGCCAGGGGGGCAATAATCATAGCTCCTTCCCCCTAGAGCATGGCGTCCTCCCCTCTCAAGACCAGTTCCACGACATCCGCTCCAACAGCCCCTATGGCCTTCCTCAGTCGCCGGGGTCGCTTCAGGCGCTACCCAGACACCAGCCTCTCATCTCTAGCTTGGTCTACCCTGACTCCGGCCTTTCTATCATGACCCAGGGCAGCGGGCCTGGGATCAACCCTGCCGTGAGGGTCTCCATGGGGGCCGCCAACGGCCCCAGCTCGGACCTATCGACTGGCAGCAGCGGAGGATACCCTGACTTTCCTGCCAGTCCTGCCTCCTGGTTAGATGAAGTGGACCACGGGCAGTTTTGATTGGTCAACAACTagaaatttgactttttttttctttgggttTCTGTGTCTTCTTTTGGATTTTAGGAATTGGAAAATAGTCACACAGGACAGTGATTGTGCAAAGGACTAGACTGACCTTGGATCTCGCAAACATCTGATTAACAGGTCCATTCAATATCTGGGATcaggatggaaggaaggaaggagaaaaaATGTCCTTCATTTACAGCACTTGGCCTAACAACTGCCCCTCAGTAGTTAAACCGTATTTAAAGCAAGACATCTGTCAAAATATTCAGTTTTCAGATACCACTATAAGCTTTCTCAAAACAATGAGACTCACTCGATTATTCAGATTTGCACCAACTTGCCCTCTTTATTCTCATCTCGTTGTTTTCTACACTGTGTTCATGTGCAGAATTCAGCACAACGTTCAGAGTCTTTAAATGTCTGGTTGTTGCCAAAtgtcgatatatatatatatatatatatatatatactgtatatatataatggttATCATTGTGGAGACTTTATTTTTATACAAACCCCTTCCTGGACACGAAAAGGAACCCAGATATGAGGACTTTGTACATTCTTAAACAGGGATATAGGCAAAATGTAGATGTTGTCTTAAATGGTACCTAGGGGTCCAATTACTtctatgcatttgtgtgttctCAGATGTATCTTGTTCGATTTGTTCTACCGAAAACAACCCCAAGGAAGAACTTGCTGTAGCACTCGGGGTTTGatgtatatgtttgtttatgtggaAAATGTTTTATGTCTTATTTATTCCCTCTGGTAATGATGACAATGATGATGATTCCTGATTAAATGACAGGACTTTAATAAATTTGTCACCTAAATCAA
>XM_039778766.1
TTGGGGCTCCTGATACACAAATTTGACAACACTTGCCTGGTCTGTGAGTGTGAATAGATCACAAATAAGACAGATTTGCATTCATGTGAGCGTAAATCATGAGCAATGGATGGACATGGTGAGCGCAAGTCTTTAAAAGAGGGACCCAATAACACGGAGATGCTCCTTGCTTTGCTCTCGCACAGTGAGGAGCTACGGAAAGAAATCCCAGTATGTGCAGGCTGCAGTCAACACATCGTGGACCGCTTTATCCTCAAAGTGCTGGATCGCCACTGGCACAGCAAGTGCCTGAAATGCAGCGACTGCCAGGCGCAACTGTCGGAGAAGTGCTTCAGCAGGGGCGACAGCGTGTACTGCAAAGAGGATTTCTTCAAATTCGGGACCAAATGCGCAGCCTGTCAGCAGGGGATACCGCCCACACAGGTGGTGAGGAGAGCGCAGGACTTTGTTTACCACCTGCACTGTTTTGCCTGCATCGTGTGCAAGAGGCAACTGGCCACAGGTGACGAGTACTATCTGATGGAGGACAGCAGGCTGGTGTGTAAGGCCGACTACGAGACCGCCAAACAGAGAGAAGCAGACTCGACTGCAAAAAGGCCACGAACAACCATCACTGCTAAACAGCTGGAAACGCTGAAGAACGCTTACAATAATTCTCCCAAACCTGCCCGACATGTCCGGGAGCAGCTATCATCAGAGACGGGCCTGGATATGCGGGTTGTGCAGGTTTGGTTTCAGAACAGGCGAGCTAAAGAGAAAAGGCTGAAGAAAGACGCCGGTCGGCAGAGGTGGGGGCAGTATTTCCGCAACATGAAGAGGTCACGAGGAAGCTCCAAATCGGACAAGGACAGCATCCAGGAGGAGGGCTTGGACAGTGACGCCGAGGTGTCCTTTACAGATGAACCACCAATGTCAGAGCTTGGCCTCACTAACGGCATCTACAGCAGCCTGAGTGAGTCCTCCCCAGGCATTGGGGGCCGCCAGGGGGGCAATAATCATAGCTCCTTCCCCCTAGAGCATGGCGTCCTCCCCTCTCAAGACCAGTTCCACGACATCCGCTCCAACAGCCCCTATGGCCTTCCTCAGTCGCCGGGGTCGCTTCAGGCGCTACCCAGACACCAGCCTCTCATCTCTAGCTTGGTCTACCCTGACTCCGGCCTTTCTATCATGACCCAGGGCAGCGGGCCTGGGATCAACCCTGCCGTGAGGGTCTCCATGGGGGCCGCCAACGGCCCCAGCTCGGACCTATCGACTGGCAGCAGCGGAGGATACCCTGACTTTCCTGCCAGTCCTGCCTCCTGGTTAGATGAAGTGGACCACGGGCAGTTTTGATTGGTCAACAACTagaaatttgactttttttttctttgggttTCTGTGTCTTCTTTTGGATTTTAGGAATTGGAAAATAGTCACACAGGACAGTGATTGTGCAAAGGACTAGACTGACCTTGGATCTCGCAAACATCTGATTAACAGGTCCATTCAATATCTGGGATcaggatggaaggaaggaaggagaaaaaATGTCCTTCATTTACAGCACTTGGCCTAACAACTGCCCCTCAGTAGTTAAACCGTATTTAAAGCAAGACATCTGTCAAAATATTCAGTTTTCAGATACCACTATAAGCTTTCTCAAAACAATGAGACTCACTCGATTATTCAGATTTGCACCAACTTGCCCTCTTTATTCTCATCTCGTTGTTTTCTACACTGTGTTCATGTGCAGAATTCAGCACAACGTTCAGAGTCTTTAAATGTCTGGTTGTTGCCAAAtgtcgatatatatatatatatatatatatatatactgtatatatataatggttATCATTGTGGAGACTTTATTTTTATACAAACCCCTTCCTGGACACGAAAAGGAACCCAGATATGAGGACTTTGTACATTCTTAAACAGGGATATAGGCAAAATGTAGATGTTGTCTTAAATGGTACCTAGGGGTCCAATTACTtctatgcatttgtgtgttctCAGATGTATCTTGTTCGATTTGTTCTACCGAAAACAACCCCAAGGAAGAACTTGCTGTAGCACTCGGGGTTTGatgtatatgtttgtttatgtggaAAATGTTTTATGTCTTATTTATTCCCTCTGGTAATGATGACAATGATGATGATTCCTGATTAAATGACAGGACTTTAATAAATTTGTCACCTAAATCAA
>XM_039778767.1
CTGGACAGAGGCAGAGCTGACCGCCGGTTACTTGAGTACTTTAGTAAAGCCGCAGGCTGCCGGGCTCACAGTCAGGTCAGCTGACGCTGCTAATGGTCAGTGGTAAAGGACACTTTTCCACAGCCACCCGCCCCTCGTCCCCAGCGCATCTCGAGCTTATCAACACGGAATCCAAGAGCAACTTGATGAATATTCAAAGTTTCCGTCCTCGGTGGCTAACGAAAGGAGAAAGTTCGACTGgcgtcatttttttaaacatttgtcagAAATCAAGCTGCCATCGAACAGAGCTCTCGCGAGGATAAATCTCCAGGAAAGTGCGGTTTTTAATCTATCGTCCATACTCAGTAGCTCGttaggcttttttttcttcttcttcttctttttttttttttttacaaagtcacAGGCGTTTCGGCGCTGCTTTCTTCCGTTGGAAGATCGGAACATCTTAAAAATGTTGCTTGAACACCCGGGGTCAAGCTGTCAAAACACCGGAAACTTCTCCCGGTACAGTTCAGGCCAAGAAATCCCAGTATGTGCAGGCTGCAGTCAACACATCGTGGACCGCTTTATCCTCAAAGTGCTGGATCGCCACTGGCACAGCAAGTGCCTGAAATGCAGCGACTGCCAGGCGCAACTGTCGGAGAAGTGCTTCAGCAGGGGCGACAGCGTGTACTGCAAAGAGGATTTCTTCAAGAGATTCGGGACCAAATGCGCAGCCTGTCAGCAGGGGATACCGCCCACACAGGTGGTGAGGAGAGCGCAGGACTTTGTTTACCACCTGCACTGTTTTGCCTGCATCGTGTGCAAGAGGCAACTGGCCACAGGTGACGAGTACTATCTGATGGAGGACAGCAGGCTGGTGTGTAAGGCCGACTACGAGACCGCCAAACAGAGAGAAGCAGACTCGACTGCAAAAAGGCCACGAACAACCATCACTGCTAAACAGCTGGAAACGCTGAAGAACGCTTACAATAATTCTCCCAAACCTGCCCGACATGTCCGGGAGCAGCTATCATCAGAGACGGGCCTGGATATGCGGGTTGTGCAGGTTTGGTTTCAGAACAGGCGAGCTAAAGAGAAAAGGCTGAAGAAAGACGCCGGTCGGCAGAGGTGGGGGCAGTATTTCCGCAACATGAAGAGGTCACGAGGAAGCTCCAAATCGGACAAGGACAGCATCCAGGAGGAGGGCTTGGACAGTGACGCCGAGGTGTCCTTTACAGATGAACCACCAATGTCAGAGCTTGGCCTCACTAACGGCATCTACAGCAGCCTGAGTGAGTCCTCCCCAGGCATTGGGGGCCGCCAGGGGGGCAATAATCATAGCTCCTTCCCCCTAGAGCATGGCGTCCTCCCCTCTCAAGACCAGTTCCACGACATCCGCTCCAACAGCCCCTATGGCCTTCCTCAGTCGCCGGGGTCGCTTCAGGCGCTACCCAGACACCAGCCTCTCATCTCTAGCTTGGTCTACCCTGACTCCGGCCTTTCTATCATGACCCAGGGCAGCGGGCCTGGGATCAACCCTGCCGTGAGGGTCTCCATGGGGGCCGCCAACGGCCCCAGCTCGGACCTATCGACTGGCAGCAGCGGAGGATACCCTGACTTTCCTGCCAGTCCTGCCTCCTGGTTAGATGAAGTGGACCACGGGCAGTTTTGATTGGTCAACAACTagaaatttgactttttttttctttgggttTCTGTGTCTTCTTTTGGATTTTAGGAATTGGAAAATAGTCACACAGGACAGTGATTGTGCAAAGGACTAGACTGACCTTGGATCTCGCAAACATCTGATTAACAGGTCCATTCAATATCTGGGATcaggatggaaggaaggaaggagaaaaaATGTCCTTCATTTACAGCACTTGGCCTAACAACTGCCCCTCAGTAGTTAAACCGTATTTAAAGCAAGACATCTGTCAAAATATTCAGTTTTCAGATACCACTATAAGCTTTCTCAAAACAATGAGACTCACTCGATTATTCAGATTTGCACCAACTTGCCCTCTTTATTCTCATCTCGTTGTTTTCTACACTGTGTTCATGTGCAGAATTCAGCACAACGTTCAGAGTCTTTAAATGTCTGGTTGTTGCCAAAtgtcgatatatatatatatatatatatatatatactgtatatatataatggttATCATTGTGGAGACTTTATTTTTATACAAACCCCTTCCTGGACACGAAAAGGAACCCAGATATGAGGACTTTGTACATTCTTAAACAGGGATATAGGCAAAATGTAGATGTTGTCTTAAATGGTACCTAGGGGTCCAATTACTtctatgcatttgtgtgttctCAGATGTATCTTGTTCGATTTGTTCTACCGAAAACAACCCCAAGGAAGAACTTGCTGTAGCACTCGGGGTTTGatgtatatgtttgtttatgtggaAAATGTTTTATGTCTTATTTATTCCCTCTGGTAATGATGACAATGATGATGATTCCTGATTAAATGACAGGACTTTAATAAATTTGTCACCTAAATCAA

Function

symbol description
lhx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within ventral spinal cord interneuron specification. Predicted to be active in nucleus. Is expressed in adenohypophyseal placode; nervous system; neural keel; and neural tube. Human ortholog(s) of this gene implicated in panhypopituitarism. Orthologous to human LHX3 (LIM homeobox 3).

NR:

description
PREDICTED: LIM/homeobox protein Lhx3 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09374 LHX3_4; LIM homeobox protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778765.1 False 2191 mRNA 0.48 6 21464351 21472938
XM_039778766.1 False 2190 mRNA 0.48 6 21464349 21472938
XM_039778767.1 True 2518 mRNA 0.48 6 21461126 21472938

Neighbor

gene id symbol gene type direction distance location
trim32 trim32 coding upstream 759343 20696052 ~ 20701783 (+)
znf618 znf618,LOC101485385 coding upstream 963359 20458356 ~ 20497767 (+)
rgs3a rgs3,LOC102788614,LOC104953710 coding upstream 1035725 20277287 ~ 20425401 (+)
hspa5 hspa5 coding upstream 1194317 20262775 ~ 20266809 (+)
dnm1a dnm1 coding upstream 1225119 20181745 ~ 20236007 (+)
LOC120544873 cunh9orf69,c14h9orf69,c12h9orf69,csgr02h9orf69 coding downstream 34542 21507480 ~ 21509631 (+)
LOC120545487 nacc2 coding downstream 40235 21513173 ~ 21543255 (+)
nup214 NA coding downstream 73896 21546834 ~ 21584572 (+)
LOC120545922 plpp7,LOC102795753,LOC103473848 coding downstream 128404 21601342 ~ 21610838 (+)
prrc2b NA coding downstream 140959 21613897 ~ 21647241 (+)
G176565 ak1 non-coding upstream 50667 21401914 ~ 21410459 (+)
G176559 NA non-coding upstream 62123 21397647 ~ 21399003 (+)
G176542 NA non-coding upstream 306271 21151267 ~ 21154855 (+)
G176507 NA non-coding upstream 523834 20936806 ~ 20937292 (+)
G176477 NA non-coding upstream 958778 20500466 ~ 20502348 (+)
G176644 NA non-coding downstream 182265 21655203 ~ 21655587 (+)
G176696 nop14 non-coding downstream 491158 21964096 ~ 21964825 (+)
G176702 NA non-coding downstream 498210 21971148 ~ 21971498 (+)
G176703 NA non-coding downstream 498700 21971638 ~ 21971985 (+)
G176704 NA non-coding downstream 499171 21972109 ~ 21972443 (+)
G176526 NA other upstream 514071 20946684 ~ 20947055 (+)
pappaa pappa other upstream 840340 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 1546446 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 2058747 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 2737341 18676021 ~ 18723785 (+)
G176753 NA other downstream 805942 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 1023475 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 1058970 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 1525315 22998253 ~ 23008834 (+)
G177094 NA other downstream 1709735 23182673 ~ 23184262 (+)

Expression


Co-expression Network