bspry (bspry,LOC100703027,LOC102783296)


Basic Information

Item Value
gene id bspry
gene name bspry,LOC100703027,LOC102783296
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20020957 ~ 20028430 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778837.1
GTTACTTCCGTGTTCTGCTCACCTGTTCCACCTGTATTACAGCGCTGCGCTGTAGGCCATCGGTGCGACTCCAGCTCTGCCGGTGCACCTGTTGCGTTATTGTGCCATGACCGAGGAGCTCATAACGTGCGAATTAACATGCCCGTCTTCACCGACTGGCCCGGGGAAGACTTTAAATGGTGTTAAAACTAAGGAGATGGATTTTGAGCAGCCTATTTTCTCCGTGTTGAGCGGCAGTGTGAAGCCGCAGCCGCAGCAGCAGCCGGCGGGGGACACGGCGCTGTCGACCTCCCCGGCTGGGACCACCGCCGAAACCGAGTCCGGGATCTTCTCTGGTGAATGTGAGTTCTGTGTGGAGCATGAGTCTGAGCTGGACTGGTTCTGTGGCACCGAGCAGAGACTTATCTGCTCTCACTGCGCCATCGTGGGCTCCTGCCACGGACACACTGTGACCCCTCTGGCCACCAGAGTAACCGCAGTCAGGAATCAACTGGTGGACGTGTGTGAGAAAATGCAGCTGCAGGCACTGAGGATTGAAAGGTTTATCGACCAGACGCTGGCAGCCAAAGAACAGAAGCTTCAGGTAGCGGCCAGCAGGGCAAGGGAGCAGGTGTTGGCTCAGGTCAGTGCAGCACGTGAAgccctggaggaggaggagcagcgtCTCCTGGAGGGGgtgcagagagaggaggagcgaGTGGAGCAGTGTCTCCTCACCCAGAGAGCCCACTGGAGCCAGGCTTTGGCGAGTCTGTCGCAAACACGCTCCGGCCTGGTGCACACGCTGACACACACTCCAGACACACAGCTGGTGACTAGTGTCCAGGAGATAGCTGACAGGGTGGAGGAGGCAGAGGGGGTCGGGGAGCCCTGTGACACGGACCAGCTCAACCTGAACCCAGGCTGCAGCGACAGCAAGCTGCTGAAAGGTCTGTGGGCCACTGCAGTGCTGCTGGGGCCAAACGCTTATGGATCATCTTCTTTAAAGTTTGATGAGCGCACAGTGAGCCCTCTCCTGTCTTTGTCTGACGACTTCTACACTTTGTCCTTTCTTCACAAAAAAGTTCGCCAATCCCCGCCCTACGACTCAGCACGCTTCGACTGTTGGCCCAATGCGCTGGGTTCACTGTCCATGTCCTCTGGCACCCACAGCTGGGTGGTGGATGTGGGCCAGAGTGGTGCCTTTAAGGTCGGGGTCTGCTACACGTCTCTGGAGCGCAAAGGCTCTGGGAACGAGGCCCGGCTGGGCTACAACAGTCAGTCTTGGGTGCTGTCTCACTATGACGGGGACTACTCCTTCTGCTACGCAGGGAAACAGGTGCCCCTGCAGGTGGTGAGGAGACCCCAGAGGATCGGCCTGCTGCTGGACTGGCCGACTCATACGCTGATGTTTTACGAGCCTAACTCCAGCGCCGTGCTGTACTCTGTCACACATCCCTTCAGTGCCCCGCTGCTGCCGGCGTTTGCCGTGACTGACCGCAGTATCACTATACTGCACTGACACACTCTGCCAAACACCTTTAACATGTGAAGAAATGCAATTCCCTAATGTAAATATGATCAGCAGCTAATGATTCTCCATCTGTTAGCAAAGGTGtcaatttctatttattttatcaGATATTCTTTTTAGTGGCTGctgattctttcttttttttcttcactattttaaatgatttaatagaTTTTAATTTAGAGATAATCAGATAATTTAATGTTATGTGTTGATCATATTATatagttattattatacagtagTGCTGTAACAGTATTTTGTTTGACTGACGatgattgtttttttatatttttaatataattgtTTTTAGCATCAGTTTGATCTGTGTAATGAAGCTTCCCTTTGTAATGAAGCGTTTCttcatagaaaaaaaataacactagtTCATCCAGGACTGTTTTAAATGTTGTGTGAGCAAGAAACTACAGAAATACTCTTGAGATAATTTTGTAACAATGTTATATGCTCAGTAAACCAATTATTACAGTA

Function

symbol description
bspry Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human BSPRY (B-box and SPRY domain containing).

NR:

description
PREDICTED: B box and SPRY domain-containing protein-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778837.1 True 2005 mRNA 0.51 6 20020957 20028430

Neighbor

gene id symbol gene type direction distance location
LOC120545547 LOC103368295 coding upstream 50845 19963771 ~ 19970112 (+)
pax8 pax8,LOC102780591 coding upstream 77114 19929571 ~ 19943843 (+)
lman2la lman2l,LOC108231067 coding upstream 120697 19894116 ~ 19900260 (+)
ddx54 NA coding upstream 495633 19516810 ~ 19525324 (+)
trnac-gca_32 NA coding upstream 503651 19517235 ~ 19517306 (+)
traf2b traf2 coding downstream 9434 20037864 ~ 20050223 (+)
bbln clg14h9orf16,LOC103376136,LOC106518230,LOC103028983 coding downstream 139497 20167927 ~ 20170745 (+)
dnm1a dnm1 coding downstream 153315 20181745 ~ 20236007 (+)
hspa5 hspa5 coding downstream 234345 20262775 ~ 20266809 (+)
rgs3a rgs3,LOC102788614,LOC104953710 coding downstream 248857 20277287 ~ 20425401 (+)
G176289 NA non-coding upstream 114834 19883987 ~ 19906123 (+)
G176292 mtfp1 non-coding upstream 128178 19888869 ~ 19892779 (+)
G176287 NA non-coding upstream 151410 19867818 ~ 19869547 (+)
G176286 med13l non-coding upstream 171052 19849690 ~ 19849905 (+)
G176284 NA non-coding upstream 215342 19805199 ~ 19805615 (+)
G176346 fbxw5 non-coding downstream 26859 20055289 ~ 20061984 (+)
LOC120544937 NA non-coding downstream 40330 20068760 ~ 20069830 (+)
G176335 LOC103376127 non-coding downstream 51421 20079851 ~ 20087641 (+)
G176357 fubp3,LOC106522831 non-coding downstream 60676 20089106 ~ 20090858 (+)
G176410 NA non-coding downstream 209097 20237527 ~ 20241216 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 106277 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 618578 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 1297172 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 1363338 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 1369888 18635026 ~ 18651069 (+)
pappaa pappa other downstream 486917 20515347 ~ 20620786 (+)
G176526 NA other downstream 918254 20946684 ~ 20947055 (+)
G176753 NA other downstream 2250450 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2467983 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 2503478 22531908 ~ 22537337 (+)

Expression


Co-expression Network