sdad1 (sdad1)


Basic Information

Item Value
gene id sdad1
gene name sdad1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22990154 ~ 22996841 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778849.1
CGGACGTGACGTTCGGACTTTTCACTGCAACTTAAATGGCAGCCTACACATCTGCCACGCTTGCCTTGTGAACTGCTGTTTTACACACTTTTCTCTCAAAATACTCGCAAACATCATCTTAAACCATGTCCGGgcgacaaaacaacaaactgcCAAACAATTTGCCACAACTGCAGAATCTCATTAAAAGAGATCCACAGTCGTACGTAGATGAGTTTCTGCAGCAGTACCGACACTACCAGTCCAATGTACAGATCTTCAAACTGCAGCCTGACAAGCCGAACAAGGAGCTGGCAGATCTTGTCATGTTTCTCGCTCAGGTTTGCCACTGCTACATGCAGCACATGACCACCTTTCCACAAGAGCTGTCTGGGTTATTGATGAGTCACCACACAATGCTAGAGCCAGACCTAAGAATGACTTTCTGCAAGGCGCTGATTCTTTTGAGGAATAAAAATCTGATCGACCCTACCTGCCTCCTGGAGCTCTTCTTTGAGCTGCTGCGATGTCACGACAAACTTCTCAGAAAGactctgtacacacacattgtAACAGATATCAAAAACATCAATGCCAAGCACAAGAACAACAAGGTTAACACAACGTTACAGAACTTCATGTACACCATGCTGAGAGACAGTAATCCCTTAGCAGCAAAAATCTCGTTAGATGTAATGGTGGAGCTATACACAAGGAACATATGGAATGATGCCAAAACAGTTAATGTCATTACAACAGCGTGCTTCTCCAAGGTGACAAAGATCCTTGTTGCTGGTCTCAAATTCTTTCTGGGCAAAGATGAGGATGAGAAAAATGGAAGTGATTCAGACTCAGAGGCGGAGGGACCAACAGTCCGAGACCTGAAGGTGAGATACTCCACTGGCAAGAAAACCTCCAAAAACAAGAAGAAGCTGGAAAAGGCGATGAATGTCCTCAAGaaacacaagaaaaagaagaaggttGAAGTGTTCAATTTCTCTGCTATTCACCTAATTCATGATCCCCAAGATTTCGCCGAGAAACTCTTGAAGCAGTTGGAAGACTCTAAAGAGCGCTTCGAGGTGAAGATTATGATGATGGAGTTCATATCCAGACTGGTTGGAATCCATGAGCTCTTCCTCTTCAATTTTTATCCCTTCGTCCAGAGGTTTTTACAGCCACATCAAAGAGAGGTGACAAAGGTTCTGCTGTGTGCTGCCCAGGCTTCACATCAACTCGTCCCACCAGAGATCATTGAACCCGTAATCATGACCATCGCCAACAACTTCGTGACGGACAGAAACTCTGGGGAGGTTATGACTGTGGGTATCAATGCCATCAAGGAATTGACAGCCCGCTGTCCACTCGCCATCAATGAAGACTTGCTGCAGGACCTGGCCCAGTACAAGACCCACAAGGACAAGAATGTGATGATGTCTGCCAGAGGACTGATCCAGCTGTTCAGGAGTCTCAATCCACAGATGCTGAACAAGAGGGACAGGGGGAGACCCACAGAGGCGTCAACAGAGGCCAAGATCAAAGACTACGGCGAGCTCGAGGCTAAAGATTATATTCCTGGAGCTGAAGTcctggaggtggaggaggggaacaaagagggagagaaggatgaAGATGGCTGGGAGAGCGCCAGTATtagtgatgatgataatgaagaTGGGGAGTGGGTGGACGTTCACCACTCATCTGACGAAGACACAGGAGAAGTGgcGGAGAAGCTTCAGAATATGCCAGTCGAGGAAAGGAAAGCCAAAGCGGCGGCGGTCAGTGGCAGCAGGCTCCTCACTCAAGATGACTTTAAGAAGATCCGTCTGGTCCAGCTGGCCAAGGAGGTCAACGCTGCGCCAGGCAAGGGccagaaaaggaaaaatgtggAGCTCGACGATGAGGACGAGAGCAGAGGGGAGGTGCTGACCTTGAGGAATATTGAGAAACTGCATAAGAAACCAAAAGCAGACAAGGAAACGCGCCTGGCAACAGCAATGGCGGGGCGGCCCGACCGGAAGGATTTTGTCAGGAAGCGGACCAAGCTGAACCCACACGCTGGCACCACCAACAAGGATAAGAGGAAGACGAAGAACTTCATGATGATGAGACACAGTCAGAATGTCAGAACCAAAGGCAAACGCTCAttcagagagaaacagATTGCTCTGCGGGATGCACTCCTGAAAAGGAAGAAGCAGTACAAGTAGGATACATGGACATAATGTTATATTTTCCTCGTGCTGGCCATCTGATGAGCATCACAGAGAATGTCAAATAATATTGTACATCCCTAAGTAGCCTGTAAAAAATGGTCAGTTTATTGTATTATTGAATGAACTGCATACATTTACTCTGTTCTAAAATAAACAATCTttgataa

Function

symbol description
sdad1 Predicted to be involved in ribosomal large subunit biogenesis and ribosomal large subunit export from nucleus. Predicted to act upstream of or within actin cytoskeleton organization; protein transport; and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in ovary. Orthologous to human SDAD1 (SDA1 domain containing 1).

NR:

description
protein SDA1 homolog

GO:

id name namespace
GO:0000055 ribosomal large subunit export from nucleus biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0030036 actin cytoskeleton organization biological_process

KEGG:

id description
K14856 SDA1, SDAD1; protein SDA1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778849.1 True 2365 mRNA 0.47 22 22990154 22996841

Neighbor

gene id symbol gene type direction distance location
LOC120545187 NA coding upstream 838 22985204 ~ 22989316 (+)
ptpn13 ptpn13 coding upstream 5234 22936704 ~ 22984920 (+)
arhgap24 arhgap24,LOC102789489 coding upstream 97631 22824300 ~ 22892523 (+)
esm1 esm1,LOC102788147 coding upstream 176008 22812118 ~ 22814146 (+)
nedd4l nedd4l,LOC107584553 coding upstream 518606 22423582 ~ 22471548 (+)
LOC120544950 LOC103473489,LOC103142714,LOC106917991,LOC106959058,LOC108231074 coding downstream 18286 23015127 ~ 23036096 (+)
LOC120545462 ppef2,LOC103366113 coding downstream 77729 23074570 ~ 23088410 (+)
amacr amacr coding downstream 158997 23155838 ~ 23165201 (+)
slc45a2 slc45a2 coding downstream 172646 23169487 ~ 23202930 (+)
nxnl2 nxnl2 coding downstream 226846 23223687 ~ 23226613 (+)
G176974 NA non-coding upstream 56509 22893156 ~ 22933645 (+)
G176908 NA non-coding upstream 242828 22747108 ~ 22747326 (+)
G176906 LOC107085810,LOC102226223,LOC103473886,LOC106958946,LOC106918003,LOC105921164 non-coding upstream 275657 22713906 ~ 22714497 (+)
G176905 hcn1,LOC108278484,LOC106958946 non-coding upstream 284030 22705726 ~ 22706124 (+)
G176904 hcn1,LOC104948050,LOC106560798,LOC107749006,LOC107662227,LOC103390262 non-coding upstream 328336 22661584 ~ 22661818 (+)
G177039 scarb2,LOC104955650,LOC107395254 non-coding downstream 107801 23104642 ~ 23116716 (+)
G177043 NA non-coding downstream 137808 23134649 ~ 23134887 (+)
G177079 NA non-coding downstream 144888 23141729 ~ 23141935 (+)
G177089 NA non-coding downstream 169718 23166559 ~ 23171678 (+)
G177091 NA non-coding downstream 175411 23172252 ~ 23177502 (+)
G176870 cplx4 other upstream 452817 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 465749 22496413 ~ 22524405 (+)
G176753 NA other upstream 707991 22278880 ~ 22282163 (+)
G176526 NA other upstream 2043099 20946684 ~ 20947055 (+)
pappaa pappa other upstream 2369368 20515347 ~ 20620786 (+)
klhl8 klhl8 other downstream 1412 22998253 ~ 23008834 (+)
G177094 NA other downstream 185832 23182673 ~ 23184262 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 444142 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 726637 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 727325 23724166 ~ 23724245 (+)

Expression


Co-expression Network