gfi1b (gfi1b)


Basic Information

Item Value
gene id gfi1b
gene name gfi1b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9993598 ~ 9999567 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778853.1
GCTAAAGGCCCCGTGTGTTTTTTTACGCAAATTTCCACCTGCAGGTTGGCCATTTCATTGGTTGAAAGCACAGTCAGATTCTCCTGCGAAATTATCTGATTGAAAATCAGggaggggagaaaaagagagagcaacaagtgtGATGCTTTTAGGCTGCTTTGCTTTTGTGACTTTTAAGGAAAGGATTTTACTCTGCAGAGCTGCTTCACCCCAggacatcattattattattagtaatagtagttaGTAGCCTATTATTGGGCCTACTGCACATTTCATTTCGACGGGGAGCTGTTGAGTTAACGGATCAATATGCCCCGGTCATTTCTGGTGAAAAACAAAAGGTGCACGTCCTATAATGTTCACCGATCATATGAAGACGAGCCGAAGGCCCCCACAAGTACAGAAGACCGACTAGAGGTCCAGAGCACGGACTCTGAAGACAGGCCTCAGTCGGAGGGGCAGTCTTCCCCTGCGGACCACTGCTCCTTTGAAAAGGACGAGGCAGAGCTTGAATGTCCCTTACCTGCTCACCCAGAGCCAACCAGACCCCCCATGGCTCCCACGCAGCCATACTACCTAAATGAGCCTCACATGGCCGGATTCCCTCCCTACTACAAGCCGCCGTACGCCTGGGAGCCGGTGCCTTCCTCCTACAAGCTCCGTCAGATGAGTTTTAGCCCCACAGTGCTGCAGCACGCCAGCAATCTGTACGGCAGTCACATCAGCCGCAGCCCGCAGCCTCCGCAGCCTCCGCAGCCTCTGGACTGCAGCACGCACTACTCCCCCACCTCCAACACCTACCACTGTATCACCTGTGAGAAGGTGTTCTCAACGCCCCACGGGCTGGAGGTTCACGTCAGGAGGTCGCACAGTGGAACCAGACCTTTTGGCTGCAGCATCTGCAGGAAGACCTTCGGCCACGCAGTCAGTCTGGAGCAACACATGAACGTCCACTCGCAGGAAAAAAGCTTTGAGTGCAAGATGTGTGGCAAATCATTCAAGCGCTCCTCCACTCTCTCCACGCACCTGCTCATCCACTCGGACACGAGGCCTTACCCCTGCCAGTACTGCGGCAAGAGGTTCCACCAGAAGTCTGACATGAAGAAACACACGTACATTCACACCGgtgAAAAGCCCCACAAGTGCCAAGTGTGTGGTAAAGCGTTCAGCCAAAGCTCCAACCTGATCACCCACAGCAGGAAACACACAGGCTTCAAACCGTTTGGATGTGACATTTGCTCCAAGGGCTTCCAGCGTAAAGTGGATCTCCGCAGGCACCACGAGAGCCAGCACGGCATGAAGTGAAGAGGAAGCCAGACCAGAGCCTGTGTTAATGTGTATAATACATTTCTATTCAAATAATAAGCTGATATGGAATTCGGATTGAAGGCTATTTAACTATAGCAAAGTCTCATCAGTATAACGAATAAATTAATTCAATTGTATTAGTTAATATAGTGGAAGTGATCTTTCAAAAGTTGTGTTTACATGTGGATGAATGGGAGATGTGCAGTTGTCATTTAGAATCAATGTACTTGGGTGTAAGGCTTTTGATAACAAAAGCAACAAGAACGTTATTTTTTGGTTtcatataatttatttaaagtgtGCTTGAATATGGCATTGTATATTATGTTGGCtggagtctgtgtgtgagttgATAAATGCTTTTAATTGAAATAAAGGGTGAAAAGTA

Function

symbol description
gfi1b Predicted to enable metal ion binding activity. Acts upstream of or within definitive hemopoiesis and erythrocyte differentiation. Predicted to be active in nucleus. Is expressed in ectoderm; erythroblast; hematopoietic system; otic vesicle; and posterior lateral mesoderm. Human ortholog(s) of this gene implicated in gray platelet syndrome and platelet-type bleeding disorder 17. Orthologous to human GFI1B (growth factor independent 1B transcriptional repressor).

NR:

description
PREDICTED: zinc finger protein Gfi-1b

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09223 GFI1; growth factor independent 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778853.1 True 1699 mRNA 0.48 8 9993598 9999567

Neighbor

gene id symbol gene type direction distance location
gtf3c5 NA coding downstream 9573 9972694 ~ 9984025 (-)
LOC120544999 LOC103362077 coding downstream 21748 9966088 ~ 9971850 (-)
LOC120545003 LOC103362077 coding downstream 29982 9958707 ~ 9963616 (-)
LOC120544997 LOC103362077 coding downstream 38861 9950160 ~ 9954737 (-)
LOC120544996 LOC104958126 coding downstream 44801 9942713 ~ 9948797 (-)
barhl1b barhl1,LOC100712077,LOC102792687 coding upstream 143503 10143070 ~ 10150003 (-)
gsna gsn coding upstream 201499 10201066 ~ 10226381 (-)
si:ch211-127i16.2 LOC103374795,LOC101469412,LOC102289489,LOC100706625,LOC102789715 coding upstream 773290 10772857 ~ 10824728 (-)
vav2 vav2 coding upstream 914147 10913714 ~ 11140925 (-)
rxraa rxra,LOC102786191,LOC102297781 coding upstream 1184295 11183862 ~ 11417652 (-)
G174116 NA non-coding downstream 196627 9795843 ~ 9796971 (-)
LOC120545476 NA non-coding downstream 655180 9337767 ~ 9338418 (-)
G173944 NA non-coding downstream 695120 9297725 ~ 9298478 (-)
G173943 NA non-coding downstream 695984 9296393 ~ 9297614 (-)
G173942 NA non-coding downstream 708265 9285076 ~ 9285333 (-)
G174139 NA non-coding upstream 45065 10044632 ~ 10045354 (-)
G174143 NA non-coding upstream 88715 10088282 ~ 10088523 (-)
G174166 NA non-coding upstream 195509 10195076 ~ 10284037 (-)
G174168 NA non-coding upstream 237178 10236745 ~ 10239274 (-)
G174196 NA non-coding upstream 331760 10331327 ~ 10335010 (-)
grin1a grin1a,LOC107600932,LOC103389281,LOC105024190,LOC106513393,LOC100534577,LOC101475684,LOC104936329,LOC102201489,LOC102777117,LOC102302700 other downstream 90591 9861001 ~ 9903007 (-)
G174120 NA other downstream 150099 9842812 ~ 9843499 (-)
G173900 NA other downstream 922390 9070162 ~ 9071208 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other downstream 1359531 8625482 ~ 8634067 (-)
G173727 LOC107687935 other downstream 1635571 8357723 ~ 8358027 (-)
gtf3c4 gtf3c4,LOC102793669 other upstream 97684 10097251 ~ 10108289 (-)
adra1ab LOC104947653,LOC100705829 other upstream 379389 10378956 ~ 10395744 (-)
LOC120545042 NA other upstream 1154200 11153767 ~ 11164494 (-)
G174439 NA other upstream 2357361 12356928 ~ 12357890 (-)
G174442 lpar1 other upstream 2390988 12390555 ~ 12391484 (-)

Expression


Co-expression Network