exosc2 (exosc2)


Basic Information

Item Value
gene id exosc2
gene name exosc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19441576 ~ 19447599 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778900.1
agaagaagaagaagaagaagaagaagaagaaaaaggagcaAAAGCAGAAGCATGGCTGCTGACATGAGATTACCAACTATTCAAAAACCAGTGTCGCTATCAGTTTCTGCTTTGGGCCGAAAAGATTTGGTCGTCCCCGGCGATGTTATCACTTCAGACACCGGCTTCATGAGAGGTCATGGTACCTATGTGGATGAAGACAAGCTGACGGCTTCAGTTGCTGGAGAGGTGCAGAGAGTAGACAAGCTGATCTGTGTCAGACCACTTAAGACCAGGTTCAACGGTGAGGTTGGAGATGTGGTGGTTGGCAGAATCACAGAGGTTCAACAGAAACGGTGGAAAGTGGAGACCAACTCACGGCTGGACTCTGTCCTCTTGTTGTCCTCTGTCAATCTGCCTGGAGGAGAGCTGAGGAGACGATCAGCAGAAGATGAGCTCACCATGAGAGAATACCTTCAGGAGGGCGATCTCATCAGTGCCGAAGTGCAGTCTGTGTTCTCCGATGGAGCCCTTTCCCTGCACACCCGTAGTTTAAAGTATGGAAAATTGGGGCAAGGAGTGCTGGTGCAGCTTTCTCCTTCTCTGATCAAGAggcagaaaacacattttcacaaccTGCCATGTGGTGCGTCAGTCATCCTCGGGAATAACGGCTTTGTGTGGTTATATCCCACACCTGAACAACAGGATGAAGAGGCTGGGGGCTTCTACACCAGCCTGGAGCCTGTTGGTCTGTCAGATCGAGAAGTGATTTCACGGCTGAGAAACTGCCTACTGGCTTTGGCTGCACATAAGGTCCTTTTGTATGACACCAGTGTTCTCTATTGCTACGAATCCTCAGTTCAACACCAGGTCAAGGACATCTTGAAACCAGAAGTGATGGAGGAGATTGTAATGTTGACGCAACAGAAGCTGTTAGAACAGGAAGGTTAAAGAGCCGAAATCCTAACTGTGACCCTATCACAAAACCCAGATCACATCCAGCAGTTATGTCAGGGACTGACCACCTATCCGAGGATCGAACTATCCTTTTTTCCAAGAACCATTCTTATTGAGATTGTCCTGTTGGACAGTTGAACAGCTccaattgtattttatgtaacAAAACTGATGATTACTATTTGACTGCTTATGGAAATGATGGGCATTTTCTCCTAGTTCTGCGGAAATCACAAAACAGCTGTTCTTACATTTTACAGAGGTATAGTGGAACACTTTTGATATGTGGtgttatacaaaaaaaactgttgttgCAATACATTTTCTATAAATATCAA

Function

symbol description
exosc2 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in immature eye; midbrain hindbrain boundary; and optic tectum. Orthologous to human EXOSC2 (exosome component 2).

NR:

description
PREDICTED: exosome complex component RRP4

GO:

id name namespace
GO:0000178 exosome (RNase complex) cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03679 RRP4, EXOSC2; exosome complex component RRP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778900.1 True 1277 mRNA 0.46 9 19441576 19447599

Neighbor

gene id symbol gene type direction distance location
mlana mlana coding upstream 119337 19318972 ~ 19322239 (+)
LOC120545863 NA coding upstream 166943 19273397 ~ 19274633 (+)
rfx3 rfx3 coding upstream 228111 19195656 ~ 19213465 (+)
glis3 NA coding upstream 248178 19177139 ~ 19193398 (+)
bmpr1bb bmpr1b,LOC102795848,LOC101481773,LOC102310602 coding upstream 475251 18906742 ~ 18966325 (+)
abl1 abl1 coding downstream 1964 19449563 ~ 19486106 (+)
ddx54 NA coding downstream 69211 19516810 ~ 19525324 (+)
trnac-gca_32 NA coding downstream 69636 19517235 ~ 19517306 (+)
lman2la lman2l,LOC108231067 coding downstream 446517 19894116 ~ 19900260 (+)
pax8 pax8,LOC102780591 coding downstream 481972 19929571 ~ 19943843 (+)
G175973 NA non-coding upstream 587028 18851078 ~ 18854548 (+)
G175974 NA non-coding upstream 604822 18836175 ~ 18836754 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding upstream 767611 18670383 ~ 18673965 (+)
G175917 NA non-coding upstream 783292 18657690 ~ 18658284 (+)
G175891 NA non-coding upstream 853283 18587759 ~ 18588293 (+)
G176173 LOC104959907,LOC106527788,LOC107745368,LOC106563285 non-coding downstream 40711 19488310 ~ 19492082 (+)
G176177 NA non-coding downstream 48437 19496036 ~ 19502184 (+)
G176225 LOC104956387,LOC101069739 non-coding downstream 115647 19563246 ~ 19565919 (+)
G176226 LOC103367784 non-coding downstream 119340 19566939 ~ 19567169 (+)
LOC120546000 NA non-coding downstream 143143 19590742 ~ 19593712 (+)
LOC120545529 ermp1,LOC102800265 other upstream 39197 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 717791 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 783957 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 790507 18635026 ~ 18651069 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 893435 18536631 ~ 18548141 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 464237 19911836 ~ 19914680 (+)
pappaa pappa other downstream 1067748 20515347 ~ 20620786 (+)
G176526 NA other downstream 1499085 20946684 ~ 20947055 (+)
G176753 NA other downstream 2831281 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 3048814 22496413 ~ 22524405 (+)

Expression


Co-expression Network