LOC120545005 (wdr70)


Basic Information

Item Value
gene id LOC120545005
gene name wdr70
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18772640 ~ 18834666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778930.1
AGCAGCTGTGCCGCAACCACAAGcgcaacagaagaagaagaaagaactTCCGGAGGTCATAGGTGATCTTCGTTTTTGAAAACATGGATCCAAACAACGTGAATGAAGCATCGGACAAGATGAGTGATGATGGAGAAATGGCATCTGTAATGGGATTCTCTGGGTTTGGTAAGAAGGCCCGCACATTTGACCTGGATGCCATTTTTGAACAGACCCGTCGAACAGCCATTGAGAGGAGTCAGCGTGCATTAGAGAGGAAGCAGAATGATGATCAGATGGCGGAGGAAGGGGAAAGCTCCAAATCAGTCAAGTCATCAGTACACACTCAGAGAGACAAAGCTGCGACTGCTACTTCCAGaaAACAGGAGAGTGAGAGCAGCAGTGACAGTGGTTCGGATTCAGACTCAGAATCAGAGCTTATTGGGCCTCCACTGCCTCCTCAATATACAGCCCAAGATGACGATgatgagcatgtgcgactgcctCGCCTACCAGGCAACGCGGCTCAcagtgatgaagatgatgatgaagggGAGACAcaagatgacgatgatgatgatgatgatgacAATCCAGTGAAGAAGATTCCAGACACTCATGAGATTACACTGCAGCACGGCACCAAGACAGTATCAGCTCTTGCCTTAGACCCCTCTGGAGCTCGTCTGGTGACTGGTGGGTATGATTATGATGTGCGGTTCTGGGATTTTGCTGGAATggaccaggctctgcaggcttTCAGATCCCTCCAGCCCTGTGAGTGCCATCAGATCAAGTCCCTGCAGTACAGCAACACTGGTGATGTCATTTTGGTGGTTTCTGGCAATGCGCAGGCCAAGGTGTTGGACCGTGATGGCTTCAATGTCATGGAGTGTGTGAAGGGAGACCAGTACATTGTGGATATGGCCAAAACCAAGGGCCACACAGCTATGCTGAATTCTGGCTGCTGGCATCCCAAGATTAAAGAAGAGTTCATGACCTGCTCCAATGATGGCACTGTGCGCACATGGGACCTGAGCTCGGAGAAGAAGCACAAGTCTGTGTTCAAACCGCGTTCCTTCCAGGGGAAGAAGGTCATCCCCACATGCTGCACCTACAGCCGCGATGGGAAGCTCATTGCGGCAGGCTGCCAGGATGGCACCATCCAGATATGGGACAGAAACCTCAGCGTCCATACAAAGTTCCACTGTCGGCAAGCACACATTCCAGGATCAGACACCTCTTGCCTCTCCTTTTCGTATGATGGCATGACTCTCGCTTCACGTGGAGGTGATGACACTCTGAAGATGTGGGATATACGTAACTTCAGGAATCCTGTGAATGTCGCTACTGGACTGACCAACTACTTTACAATGACTGACTGCTGTTTTAGCCCAGATGACAAACTTCTTGTAACGGGGACCTCTGTGAAGAAAGACGAGGGGAATGGGAAGCTGGCTTTCTTTGAGCGAGCTTCCTTTCAGAAGGTCTATGAAATAGAAGTCACCAATGCAAGCGTCGTACGCTGCCTGTGGCACCCAAAACTTAACCAGATAATGGTGGGAACTGGGAATGGACTGTCCAAGGTCTACTATGACCCTGTTAAAAGCCACAGAGGTGCTAAGCTGTGCGTAGTGAAGAGTCAGCGGAAAGAGAGACAAGCAGAGACGCTTACACAAGATTACATCATCACACCTCATGCCTTACCCATGTTCAGAGAGGCCCGGCAGCGGAGTACACGAAAACAGCTGGAGAAGGACCGACTTGACCCAAAGAAATCCCACAAACCTGAGCCGCCTGTGTCTGGACCAGGTCGTGGAGGAAGAGTAGCAGCTCATGGTGGCACTCTGTCTTCATTCATTGTGAAGAACATTGCTTTAGATAAAACCGATGACAGTAACCCACGGCAAGCCATCCTACGTCACGCCAAGGAAGCTTCAGAAAATCCTTACTGGGTTGCTCCGGCATACACACAGACCCAGCCAGAGCCTGTGTTTGCAGAGGAAtcagaggaggatgaggaagcTGACAAGGAACCAGAGTGGAAGAAACGCAAGATCTGAGGTGCCTCAACTGCAGCTCATCTATATGGAATAGCAGACAGGgtgggcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>XM_039778931.1
AGCAGCTGTGCCGCAACCACAAGcgcaacagaagaagaagaaagaactTCCGGAGGTCATAGGTGATCTTCGTTTTTGAAAACATGGATCCAAACAACGTGAATGAAGCATCGGACAAGATGAGTGATGATGGAGAAATGGCATCTGTAATGGGATTCTCTGGGTTTGGTAAGAAGGCCCGCACATTTGACCTGGATGCCATTTTTGAACAGACCCGTCGAACAGCCATTGAGAGGAGTCAGCGTGCATTAGAGAGGAAGCAGAATGATGATCAGATGGCGGAGGAAGGGGAAAGCTCCAAATCAGTCAAGTCATCAGTACACACTCAGAGAGACAAAGCTGCGACTGCTACTTCCAGaaAACAGGAGAGTGAGAGCAGCAGTGACAGTGGTTCGGATTCAGACTCAGAATCAGAGCTTATTGGGCCTCCACTGCCTCCTCAATATACAGCCCAAGATGACGATgatgagcatgtgcgactgcctCGCCTACCAGGCAACGCGGCTCAcagtgatgaagatgatgatgaagggGAGACAcaagatgacgatgatgatgatgatgatgacAATCCAGTGAAGAAGATTCCAGACACTCATGAGATTACACTGCAGCACGGCACCAAGACAGTATCAGCTCTTGCCTTAGACCCCTCTGGAGCTCGTCTGGTGACTGGTGGGTATGATTATGATGTGCGGTTCTGGGATTTTGCTGGAATggaccaggctctgcaggcttTCAGATCCCTCCAGCCCTGTGAGTGCCATCAGATCAAGTCCCTGCAGTACAGCAACACTGGTGATGTCATTTTGGTGGTTTCTGGCAATGCGCAGGCCAAGGTGTTGGACCGTGATGGCTTCAATGTCATGGAGTGTGTGAAGGGAGACCAGTACATTGTGGATATGGCCAAAACCAAGGGCCACACAGCTATGCTGAATTCTGGCTGCTGGCATCCCAAGATTAAAGAAGAGTTCATGACCTGCTCCAATGATGGCACTGTGCGCACATGGGACCTGAGCTCGGAGAAGAAGCACAAGTCTGTGTTCAAACCGCGTTCCTTCCAGGGGAAGAAGGTCATCCCCACATGCTGCACCTACAGCCGCGATGGGAAGCTCATTGCGGCAGGCTGCCAGGATGGCACCATCCAGATATGGGACAGAAACCTCAGCGTCCATACAAAGTTCCACTGTCGGCAAGCACACATTCCAGGATCAGACACCTCTTGCCTCTCCTTTTCGTATGATGGCATGACTCTCGCTTCACGTGGAGGTGATGACACTCTGAAGATGTGGGATATACGTAACTTCAGGAATCCTGTGAATGTCGCTACTGGACTGACCAACTACTTTACAATGACTGACTGCTGTTTTAGCCCAGATGACAAACTTCTTGTAACGGGGACCTCTGTGAAGAAAGACGAGGGGAATGGGAAGCTGGCTTTCTTTGAGCGAGCTTCCTTTCAGAAGGTCTATGAAATAGAAGTCACCAATGCAAGCGTCGTACGCTGCCTGTGGCACCCAAAACTTAACCAGATAATGGTGGGAACTGGGAATGGACTGTCCAAGGTCTACTATGACCCTGTTAAAAGCCACAGAGGTGCTAAGCTGTGCGTAGTGAAGAGTCAGCGGAAAGAGAGACAAGCAGAGACGCTTACACAAGATTACATCATCACACCTCATGCCTTACCCATGTTCAGAGAGGCCCGGCAGCGGAGTACACGAAAACAGCTGGAGAAGGACCGACTTGACCCAAAGAAATCCCACAAACCTGAGCCGCCTGTGTCTGGACCAGGTCGTGGAGGAAGAGTAGCAGCTCATGGTGGCACTCTGTCTTCATTCATTGTGAAGAACATTGCTTTAGATAAAACCGATGACAGTAACCCACGGCAAGCCATCCTACGTCACGCCAAGGAAGCTTCAGAAAATCCTTACTGGGTTGCTCCGGCATACACACAGACCCAGCCAGAGCCTGTGTTTGCAGAGGAAtcagaggaggatgaggaagcTGACAAGGAACCAGAGTGGAAGAAACGCAAGATCTGAGGTGCCTCAACTGCAGCTCATCTATATGGAATAGCAGACAGGGTGTTGCAGCGGTCCATCACATCAGCAGTCATAAGTCTCTCTGCCCTCGTGCCCTCACTGAAGCATCACAAGAGTTCAGGGTGAGTGGACAACTCAGCTACACTATAACCACTCAACATATTTTTACAAACcaacagaaaaaagaaattgttgGTTCAACAGTAATATTCAAATTGCAATGATTCCAtgccagtgcatgctgggatagcCTCCAGGCTCCCATTTACCCTGAACAGGAATAAGCAGGtaaaaagaatgaatgaaaggaaatcatacTTATATAAACAAGTTTAAAAGCACGAATGTAATATGAACT

Function

symbol description
wdr70 Enables enzyme binding activity. Predicted to be involved in regulation of DNA double-strand break processing and regulation of histone H2B conserved C-terminal lysine ubiquitination. Predicted to be active in nucleus and site of double-strand break.

NR:

description
PREDICTED: WD repeat-containing protein 70 isoform X1

GO: NA

KEGG:

id description
K24752 WDR70; WD repeat-containing protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778930.1 False 2139 mRNA 0.50 18 18772640 18820502
XM_039778931.1 True 2400 mRNA 0.49 19 18772640 18834666

Neighbor

gene id symbol gene type direction distance location
cplane1 NA coding upstream 443 18752044 ~ 18772197 (+)
LOC120545567 LOC102210433,LOC104924646,LOC102792360,LOC100707569,LOC104958897 coding upstream 46256 18723885 ~ 18726384 (+)
git2b LOC103360644 coding upstream 49383 18704773 ~ 18723257 (+)
m17 NA coding upstream 197506 18573664 ~ 18575134 (+)
taok3b LOC104958930,LOC103360656 coding upstream 201592 18562440 ~ 18571048 (+)
opn4xa LOC103360637 coding downstream 24602 18859268 ~ 18864887 (+)
pdlim5b LOC104950678,LOC102795075,LOC100697721 coding downstream 33687 18868353 ~ 18905862 (+)
bmpr1bb bmpr1b,LOC102795848,LOC101481773,LOC102310602 coding downstream 72076 18906742 ~ 18966325 (+)
glis3 NA coding downstream 342473 19177139 ~ 19193398 (+)
rfx3 rfx3 coding downstream 360990 19195656 ~ 19213465 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding upstream 98675 18670383 ~ 18673965 (+)
G175917 NA non-coding upstream 114356 18657690 ~ 18658284 (+)
G175891 NA non-coding upstream 184347 18587759 ~ 18588293 (+)
G175804 rnf185 non-coding upstream 306576 18464270 ~ 18466064 (+)
G175797 NA non-coding upstream 321572 18449802 ~ 18451068 (+)
G175974 NA non-coding downstream 1509 18836175 ~ 18836754 (+)
G175973 NA non-coding downstream 16412 18851078 ~ 18854548 (+)
G176173 LOC104959907,LOC106527788,LOC107745368,LOC106563285 non-coding downstream 653644 19488310 ~ 19492082 (+)
G176177 NA non-coding downstream 661370 19496036 ~ 19502184 (+)
G176225 LOC104956387,LOC101069739 non-coding downstream 728580 19563246 ~ 19565919 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 48855 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 115021 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 121571 18635026 ~ 18651069 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 224499 18536631 ~ 18548141 (+)
tmem120b tmem120b,LOC101471304,LOC102195879 other upstream 372194 18391739 ~ 18400446 (+)
LOC120545529 ermp1,LOC102800265 other downstream 545584 19380250 ~ 19402379 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 1077170 19911836 ~ 19914680 (+)
pappaa pappa other downstream 1680681 20515347 ~ 20620786 (+)
G176526 NA other downstream 2112018 20946684 ~ 20947055 (+)
G176753 NA other downstream 3444214 22278880 ~ 22282163 (+)

Expression


Co-expression Network