opn4xa (LOC103360637)


Basic Information

Item Value
gene id opn4xa
gene name LOC103360637
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18859268 ~ 18864887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778932.1
TGGCACATATGGTTCCCACATGATGTCACAATTTATAGAAACAAGTTGACACAATTGGTATATTGATTTGTGGGATGCTGAGCATCTTTCAATCTTCATGTGTTACAGTAACAAGAAGCTACGGACTGCCCCCAACTATTTCATCATGAACCAAGCAGTCAGTGACTTCCTCATGGCAATTACACAGTCACCCATCTTCTTCGTGAACTCCCTTTACCAAGGGTGGATTTTTGGTGAAACAGGCTGTAAAATGTACGCCTTCTGTGGAGCTTTGTTTGGACTCACTTCCATGATAAACCTTCTGGCCATCTCTCTAGATCGCTACATTGTCATCACCAAGCCTCTGCAGGCCATACGGTGGACCTCCAAGAGACGCACTTGCCTCGTTATTGCTCTGGTCTGGCTGTACTCACTAGCCTGGAGCCTTGCACCCCTTTTAGGGTGGAGTTCATACATACCGGAGGGCCTGATGACCTCATGCACATGGGACTACATGACATCTACTCCTGCAAATAAAAGTTATACTTTGATGCTATGCTGCTTTGCATTCTTCATCCCTCTGGGCATTATATCCTATTGTTATCTGTGCATGTTCCTGGCAATCCGCCATGCAAGCAGAGATGTGGAGAAGTTTGGGAATCAGCTGAGGAAGTCAACTCTTATCCAGCAGCAGTCCATCAAGACTGAATGGAAGCTGGCCAAGATTGCCTTTGTGGTCATCATAGTGTATGTGCTTTCCTGGTCGCCCTATACATGTGTCACCCTCATCGCCTGGGCTggATATGGAAGAATCCTCAGTCCCTATTCCAAAGCTGTCCCTGCTGTTATAGCCAAGGCATCAACCATTTACAACCCTATTATCTATGCCATCATTCACTCTAAATACAGggaCACCATGGCAGAAAAGGTTCCCTGTCTGCACTTCCTAGCCCAGGTCTCACGGAGGAAGTGCATATCAGGCAGCGAATCTTCCATCAGGGAGTTGGGGCTGAGCAGACAGTCATCAGTCTTCAAAACCAAGTTTCACAGAGTTTCTTCCATGTCTACGACAGACACACAGGTTTGGAGTGATGTGGAGCTGGACTCTATCAACCAGAGCCAATGTGTGAGGTCCAGCTATTCCCTCGGGTCTCTGAGGGACAAAGAGCACAAGTCATTAGCTAAGCAGGCCATAGGAAAGGGAAGCCAAAGCCAGGAACAGATCCACATGCCAGAGCGAGGATCACTGAACAGATGTGACCACACCCCATCacctgagtctgtcagcacagtCATGCCATGGGCATTGGGGAAGAGAAGGGAGGAGAATCCTAACAGTTGGAATAAAGAGAACACACAGGAAGATGAGGAAAAAGAGGGTGAACatgaacagagagagggacagcaaGTTCAGAAGGAGAAAGAAGTGAAGGAGCCTAAGGACCTCATCcagccagactctctggacaatactgtatgtgtgcactcCCAAGCGATCATCAGACCCAACTTAAACCATGACTATTGTGAGGAAAAACAAACCacacagagcagacagagagaacTGTTGCTCAATATACAGCCTCTTGCCAGTTCTGCTCAAGGATTTGAGTCTGTGCAAAGATTTCTAAGCTAAAtgctggatatgtttatttgtctaTGTGGCTATGTGTGACTGTGACACAGCAAGtaaacaagttttttttctttgttcaaGAATGCTGAGGTAATCTTTTGAAGCAGCTGTCGAAACTTTTATCTCAACTGTTTGGCAATGCACTGCAACCAAGTACATTTGTTTATAGGTGTTTGTGCCATATAGGTTAAGGTTTATATACACAACTGCTCTAATAATCCTGGCACACACCTCTCATGTTAACACTTGTTGTTAACATGCATAATAATGCTACCCCAATTGTTTTTGGTTTAGAGGCACATGCTCGGTATGACACTGTCACAGTGAAACAATTACAAACGGAACCTTAACTTAAAATGACCGTTAaagttcaaaataaataaaataaataaataaaacattatgcACTTTTTTGCCTTTAATAATAGGAAGgcaatgaaagggggagagagagagggaagacatgcaggaaatcatccgaggtcagacttgaaccctggaccttctgcatcaaggcataaacctcttaGTATATGTGTTCCCactctacccactgagctaaCCTGTTGTCAAGCTAGCCAATAAACAACATTATACCAAGAACAACTAATGAAAGACCATCCATATTTATTATCAATTTGCAGAGAGAGCAAAGTTTGACTCTATTTGGAGTGtttcttgtttatttctgtgaGAAAGCatatttttgtacatttgtttattttgtaactAAGGCTATCTATTGCTCATTTAAATAAGCAATGAGAAAATGTGGTAACTATTTCTTTCATTATTTCTCTATAATGCACCATAAGCAAGTTCATTAAGTACATAACACATGTATGTATCATTGCACAACTCATTATCATAATACGCCATATACCATTGTTTATCAGGTTTTGAAAGTTGCTGACATTATGTGCTGTATCATGAGTTCAGGCACCATAGTAATTAAGCGTTATGCAACCCAAAACTTTAATTCACTGCAGTTGCTAACCAAAGTAAGTCATAGTGCATTTCAGCTACCAGATGTGGTAGGTCATGAAGACACTTGACACTCTGATTTATCTATTTATCATCCGTTCATCCTTTTTTTACAAGAAAAAAGGCAGCATGTTCTCAGGAAATGAATTGGCACAGCAGCAATCACTAAAATGTTGTACCTTTTCCTTATTTGAATACTCAGTATTTGTTGCTATTGGTGCTACTGTTAAATCTTAAACTAAAGACGttattgtgtatttgttgtggaAATAAACTTTTCATATAGCTCTCAA
>XM_039778933.1
TGGCACATATGGTTCCCACATGATGTCACAATTTATAGAAACAAGTTGACACAATTGGTATATTGATTTGTGGGATGCTGAGCATCTTTCAATCTTCATGTGTTACAGTAACAAGAAGCTACGGACTGCCCCCAACTATTTCATCATGAACCAAGCAGTCAGTGACTTCCTCATGGCAATTACACAGTCACCCATCTTCTTCGTGAACTCCCTTTACCAAGGGTGGATTTTTGGTGAAACAGGCTGTAAAATGTACGCCTTCTGTGGAGCTTTGTTTGGACTCACTTCCATGATAAACCTTCTGGCCATCTCTCTAGATCGCTACATTGTCATCACCAAGCCTCTGCAGGCCATACGGTGGACCTCCAAGAGACGCACTTGCCTCGTTATTGCTCTGGTCTGGCTGTACTCACTAGCCTGGAGCCTTGCACCCCTTTTAGGGTGGAGTTCATACATACCGGAGGGCCTGATGACCTCATGCACATGGGACTACATGACATCTACTCCTGCAAATAAAAGTTATACTTTGATGCTATGCTGCTTTGCATTCTTCATCCCTCTGGGCATTATATCCTATTGTTATCTGTGCATGTTCCTGGCAATCCGCCATGCAAGCAGAGATGTGGAGAAGTTTGGGAATCAGCTGAGGAAGTCAACTCTTATCCAGCAGCAGTCCATCAAGACTGAATGGAAGCTGGCCAAGATTGCCTTTGTGGTCATCATAGTGTATGTGCTTTCCTGGTCGCCCTATACATGTGTCACCCTCATCGCCTGGGCTggATATGGAAGAATCCTCAGTCCCTATTCCAAAGCTGTCCCTGCTGTTATAGCCAAGGCATCAACCATTTACAACCCTATTATCTATGCCATCATTCACTCTAAATACAGggaCACCATGGCAGAAAAGGTTCCCTGTCTGCACTTCCTAGCCCAGGTCTCACGGAGGAAGTGCATATCAGGCAGCGAATCTTCCATCAGGGAGTTGGGGCTGAGCAGACAGTCATCAGTCTTCAAAACCAAGTTTCACAGAGTTTCTTCCATGTCTACGACAGACACAGTTTGGAGTGATGTGGAGCTGGACTCTATCAACCAGAGCCAATGTGTGAGGTCCAGCTATTCCCTCGGGTCTCTGAGGGACAAAGAGCACAAGTCATTAGCTAAGCAGGCCATAGGAAAGGGAAGCCAAAGCCAGGAACAGATCCACATGCCAGAGCGAGGATCACTGAACAGATGTGACCACACCCCATCacctgagtctgtcagcacagtCATGCCATGGGCATTGGGGAAGAGAAGGGAGGAGAATCCTAACAGTTGGAATAAAGAGAACACACAGGAAGATGAGGAAAAAGAGGGTGAACatgaacagagagagggacagcaaGTTCAGAAGGAGAAAGAAGTGAAGGAGCCTAAGGACCTCATCcagccagactctctggacaatactgtatgtgtgcactcCCAAGCGATCATCAGACCCAACTTAAACCATGACTATTGTGAGGAAAAACAAACCacacagagcagacagagagaacTGTTGCTCAATATACAGCCTCTTGCCAGTTCTGCTCAAGGATTTGAGTCTGTGCAAAGATTTCTAAGCTAAAtgctggatatgtttatttgtctaTGTGGCTATGTGTGACTGTGACACAGCAAGtaaacaagttttttttctttgttcaaGAATGCTGAGGTAATCTTTTGAAGCAGCTGTCGAAACTTTTATCTCAACTGTTTGGCAATGCACTGCAACCAAGTACATTTGTTTATAGGTGTTTGTGCCATATAGGTTAAGGTTTATATACACAACTGCTCTAATAATCCTGGCACACACCTCTCATGTTAACACTTGTTGTTAACATGCATAATAATGCTACCCCAATTGTTTTTGGTTTAGAGGCACATGCTCGGTATGACACTGTCACAGTGAAACAATTACAAACGGAACCTTAACTTAAAATGACCGTTAaagttcaaaataaataaaataaataaataaaacattatgcACTTTTTTGCCTTTAATAATAGGAAGgcaatgaaagggggagagagagagggaagacatgcaggaaatcatccgaggtcagacttgaaccctggaccttctgcatcaaggcataaacctcttaGTATATGTGTTCCCactctacccactgagctaaCCTGTTGTCAAGCTAGCCAATAAACAACATTATACCAAGAACAACTAATGAAAGACCATCCATATTTATTATCAATTTGCAGAGAGAGCAAAGTTTGACTCTATTTGGAGTGtttcttgtttatttctgtgaGAAAGCatatttttgtacatttgtttattttgtaactAAGGCTATCTATTGCTCATTTAAATAAGCAATGAGAAAATGTGGTAACTATTTCTTTCATTATTTCTCTATAATGCACCATAAGCAAGTTCATTAAGTACATAACACATGTATGTATCATTGCACAACTCATTATCATAATACGCCATATACCATTGTTTATCAGGTTTTGAAAGTTGCTGACATTATGTGCTGTATCATGAGTTCAGGCACCATAGTAATTAAGCGTTATGCAACCCAAAACTTTAATTCACTGCAGTTGCTAACCAAAGTAAGTCATAGTGCATTTCAGCTACCAGATGTGGTAGGTCATGAAGACACTTGACACTCTGATTTATCTATTTATCATCCGTTCATCCTTTTTTTACAAGAAAAAAGGCAGCATGTTCTCAGGAAATGAATTGGCACAGCAGCAATCACTAAAATGTTGTACCTTTTCCTTATTTGAATACTCAGTATTTGTTGCTATTGGTGCTACTGTTAAATCTTAAACTAAAGACGttattgtgtatttgttgtggaAATAAACTTTTCATATAGCTCTCAA
>XM_039778934.1
TGGCACATATGGTTCCCACATGATGTCACAATTTATAGAAACAAGTTGACACAATTGGTATATTGATTTGTGGGATGCTGAGCATCTTTCAATCTTCATGTGTTACAGTAACAAGAAGCTACGGACTGCCCCCAACTATTTCATCATGAACCAAGCAGTCAGTGACTTCCTCATGGCAATTACACAGTCACCCATCTTCTTCGTGAACTCCCTTTACCAAGGGTGGATTTTTGGTGAAACAGATCGCTACATTGTCATCACCAAGCCTCTGCAGGCCATACGGTGGACCTCCAAGAGACGCACTTGCCTCGTTATTGCTCTGGTCTGGCTGTACTCACTAGCCTGGAGCCTTGCACCCCTTTTAGGGTGGAGTTCATACATACCGGAGGGCCTGATGACCTCATGCACATGGGACTACATGACATCTACTCCTGCAAATAAAAGTTATACTTTGATGCTATGCTGCTTTGCATTCTTCATCCCTCTGGGCATTATATCCTATTGTTATCTGTGCATGTTCCTGGCAATCCGCCATGCAAGCAGAGATGTGGAGAAGTTTGGGAATCAGCTGAGGAAGTCAACTCTTATCCAGCAGCAGTCCATCAAGACTGAATGGAAGCTGGCCAAGATTGCCTTTGTGGTCATCATAGTGTATGTGCTTTCCTGGTCGCCCTATACATGTGTCACCCTCATCGCCTGGGCTggATATGGAAGAATCCTCAGTCCCTATTCCAAAGCTGTCCCTGCTGTTATAGCCAAGGCATCAACCATTTACAACCCTATTATCTATGCCATCATTCACTCTAAATACAGggaCACCATGGCAGAAAAGGTTCCCTGTCTGCACTTCCTAGCCCAGGTCTCACGGAGGAAGTGCATATCAGGCAGCGAATCTTCCATCAGGGAGTTGGGGCTGAGCAGACAGTCATCAGTCTTCAAAACCAAGTTTCACAGAGTTTCTTCCATGTCTACGACAGACACACAGGTTTGGAGTGATGTGGAGCTGGACTCTATCAACCAGAGCCAATGTGTGAGGTCCAGCTATTCCCTCGGGTCTCTGAGGGACAAAGAGCACAAGTCATTAGCTAAGCAGGCCATAGGAAAGGGAAGCCAAAGCCAGGAACAGATCCACATGCCAGAGCGAGGATCACTGAACAGATGTGACCACACCCCATCacctgagtctgtcagcacagtCATGCCATGGGCATTGGGGAAGAGAAGGGAGGAGAATCCTAACAGTTGGAATAAAGAGAACACACAGGAAGATGAGGAAAAAGAGGGTGAACatgaacagagagagggacagcaaGTTCAGAAGGAGAAAGAAGTGAAGGAGCCTAAGGACCTCATCcagccagactctctggacaatactgtatgtgtgcactcCCAAGCGATCATCAGACCCAACTTAAACCATGACTATTGTGAGGAAAAACAAACCacacagagcagacagagagaacTGTTGCTCAATATACAGCCTCTTGCCAGTTCTGCTCAAGGATTTGAGTCTGTGCAAAGATTTCTAAGCTAAAtgctggatatgtttatttgtctaTGTGGCTATGTGTGACTGTGACACAGCAAGtaaacaagttttttttctttgttcaaGAATGCTGAGGTAATCTTTTGAAGCAGCTGTCGAAACTTTTATCTCAACTGTTTGGCAATGCACTGCAACCAAGTACATTTGTTTATAGGTGTTTGTGCCATATAGGTTAAGGTTTATATACACAACTGCTCTAATAATCCTGGCACACACCTCTCATGTTAACACTTGTTGTTAACATGCATAATAATGCTACCCCAATTGTTTTTGGTTTAGAGGCACATGCTCGGTATGACACTGTCACAGTGAAACAATTACAAACGGAACCTTAACTTAAAATGACCGTTAaagttcaaaataaataaaataaataaataaaacattatgcACTTTTTTGCCTTTAATAATAGGAAGgcaatgaaagggggagagagagagggaagacatgcaggaaatcatccgaggtcagacttgaaccctggaccttctgcatcaaggcataaacctcttaGTATATGTGTTCCCactctacccactgagctaaCCTGTTGTCAAGCTAGCCAATAAACAACATTATACCAAGAACAACTAATGAAAGACCATCCATATTTATTATCAATTTGCAGAGAGAGCAAAGTTTGACTCTATTTGGAGTGtttcttgtttatttctgtgaGAAAGCatatttttgtacatttgtttattttgtaactAAGGCTATCTATTGCTCATTTAAATAAGCAATGAGAAAATGTGGTAACTATTTCTTTCATTATTTCTCTATAATGCACCATAAGCAAGTTCATTAAGTACATAACACATGTATGTATCATTGCACAACTCATTATCATAATACGCCATATACCATTGTTTATCAGGTTTTGAAAGTTGCTGACATTATGTGCTGTATCATGAGTTCAGGCACCATAGTAATTAAGCGTTATGCAACCCAAAACTTTAATTCACTGCAGTTGCTAACCAAAGTAAGTCATAGTGCATTTCAGCTACCAGATGTGGTAGGTCATGAAGACACTTGACACTCTGATTTATCTATTTATCATCCGTTCATCCTTTTTTTACAAGAAAAAAGGCAGCATGTTCTCAGGAAATGAATTGGCACAGCAGCAATCACTAAAATGTTGTACCTTTTCCTTATTTGAATACTCAGTATTTGTTGCTATTGGTGCTACTGTTAAATCTTAAACTAAAGACGttattgtgtatttgttgtggaAATAAACTTTTCATATAGCTCTCAA

Function

NR:

description
PREDICTED: melanopsin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778932.1 True 2892 mRNA 0.42 8 18859268 18864887
XM_039778933.1 False 2889 mRNA 0.42 8 18859268 18864887
XM_039778934.1 False 2817 mRNA 0.42 8 18859268 18864887

Neighbor

gene id symbol gene type direction distance location
LOC120545005 wdr70 coding upstream 24602 18772640 ~ 18834666 (+)
cplane1 NA coding upstream 87071 18752044 ~ 18772197 (+)
LOC120545567 LOC102210433,LOC104924646,LOC102792360,LOC100707569,LOC104958897 coding upstream 132884 18723885 ~ 18726384 (+)
git2b LOC103360644 coding upstream 136011 18704773 ~ 18723257 (+)
m17 NA coding upstream 284134 18573664 ~ 18575134 (+)
pdlim5b LOC104950678,LOC102795075,LOC100697721 coding downstream 3466 18868353 ~ 18905862 (+)
bmpr1bb bmpr1b,LOC102795848,LOC101481773,LOC102310602 coding downstream 41855 18906742 ~ 18966325 (+)
glis3 NA coding downstream 312252 19177139 ~ 19193398 (+)
rfx3 rfx3 coding downstream 330769 19195656 ~ 19213465 (+)
LOC120545863 NA coding downstream 408510 19273397 ~ 19274633 (+)
G175973 NA non-coding upstream 4720 18851078 ~ 18854548 (+)
G175974 NA non-coding upstream 22514 18836175 ~ 18836754 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding upstream 185303 18670383 ~ 18673965 (+)
G175917 NA non-coding upstream 200984 18657690 ~ 18658284 (+)
G175891 NA non-coding upstream 270975 18587759 ~ 18588293 (+)
G176173 LOC104959907,LOC106527788,LOC107745368,LOC106563285 non-coding downstream 623423 19488310 ~ 19492082 (+)
G176177 NA non-coding downstream 631149 19496036 ~ 19502184 (+)
G176225 LOC104956387,LOC101069739 non-coding downstream 698359 19563246 ~ 19565919 (+)
G176226 LOC103367784 non-coding downstream 702052 19566939 ~ 19567169 (+)
LOC120546000 NA non-coding downstream 725855 19590742 ~ 19593712 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 135483 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 201649 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 208199 18635026 ~ 18651069 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 311127 18536631 ~ 18548141 (+)
tmem120b tmem120b,LOC101471304,LOC102195879 other upstream 458822 18391739 ~ 18400446 (+)
LOC120545529 ermp1,LOC102800265 other downstream 515363 19380250 ~ 19402379 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 1046949 19911836 ~ 19914680 (+)
pappaa pappa other downstream 1650460 20515347 ~ 20620786 (+)
G176526 NA other downstream 2081797 20946684 ~ 20947055 (+)
G176753 NA other downstream 3413993 22278880 ~ 22282163 (+)

Expression


Co-expression Network