edf1 (edf1,LOC106563255)


Basic Information

Item Value
gene id edf1
gene name edf1,LOC106563255
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21651855 ~ 21655151 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778946.1
TGTTGTAAATAAAGCTTTGGCAGAACGCGTGGATGATAATTCTGGAAGGAGTGTCTAGTCCGCTAAAGtaacactaccttatttaaaaAGGGTTAATTTCGAACACTGAGTtgtacttattattattattattttttttatattacggGTAACGAGTGAACCCCTGAAAAACATGGCAGAAAGTGACTGGGATACCGTGACTGTCTTGAGGAAGAAGGGGCCGACTGCTGCACAGGCCAAATCCAAGCAGGCAATCACTGCTGCTCAGAGACGTGGGCAGGACGTTGAGACATCCAAGAAATGGTCTGCAGGGCAGAATAAACAGCATCTTGTGACAAAGAACACAGCCAAACTGGACCGGGAGACAGAGGAGCTTCACCATGACAGAGTTCCCCTGGAGGTGGGCAAGTACATTCAGCAAGGCAGACAGGATAACGGTCTGACCCAGAAAGACCTGGCTACTAAAATTAACGAGAAGCCTCAAGTCATTGCGGACTACGAGTGTGGGAAAGCAATTCCTAACAACCAGGTCTTGGGCAAGATAGAGAGAGCAATTGGGCTGAAACTGCGTGGGAAGGATATTGGCCTACCACTGGAGGCAAAACCCAAGAAGAAATGAATACAAAGCCTCGAAATCAGCCCTCCCTTCCCATCTTTCCCAGTTTCTAGAAACAGAACCCTTTCCCCACCCTCAAAAATCTcccccatccctccctcccactACCTGGGCTGATCTCACCTGTGTCCTGCCTGAGGACCTGGTGCTCCACTGCATTACAGGCTGCATACTGAAACAGTTACTTGACCACATAATCAATGAATGATCGAACATATTTTTCAACGTCACAAGCTCCAAGTTCTGTGAACCTTCTTTTCACCTATGTCTGCTTAGGCTTTGGCatgataaattaaactttttgATAGTAATGTAAGCTCATTCAAAAAGTTGACTTATTTTTCATGACCAAACAAACTAGTTTGACATTAATTCTGAGCATGATGTTAAGCCAAAAGTGCTTGATTGCATCTTTTTCACACACTTGAGACAGTGGGTGTatttacagtgtttttttttaatgctgtgcTTGGTTTTGatctaaaaaataaagtttgacAGTTCATGACATTA

Function

symbol description
edf1 Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human EDF1 (endothelial differentiation related factor 1).

NR:

description
endothelial differentiation-related factor 1 homolog isoform X1

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K03627 MBF1; putative transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778946.1 True 1129 mRNA 0.43 5 21651855 21655151

Neighbor

gene id symbol gene type direction distance location
prrc2b NA coding upstream 4614 21613897 ~ 21647241 (+)
LOC120545922 plpp7,LOC102795753,LOC103473848 coding upstream 41017 21601342 ~ 21610838 (+)
nup214 NA coding upstream 67283 21546834 ~ 21584572 (+)
LOC120545487 nacc2 coding upstream 108600 21513173 ~ 21543255 (+)
LOC120544873 cunh9orf69,c14h9orf69,c12h9orf69,csgr02h9orf69 coding upstream 142224 21507480 ~ 21509631 (+)
tmem38b tmem38b coding downstream 74520 21729671 ~ 21742031 (+)
znf462 znf462,LOC103359970 coding downstream 140486 21795637 ~ 21845058 (+)
rad23b rad23b coding downstream 198677 21853828 ~ 21862135 (+)
LOC120545760 snca,LOC104940963,LOC100691213,LOC101468074,LOC107374679,LOC103142753,LOC102228921 coding downstream 295107 21950258 ~ 21962665 (+)
sema4d sema4d coding downstream 357784 22012935 ~ 22054041 (+)
G176565 ak1 non-coding upstream 241396 21401914 ~ 21410459 (+)
G176559 NA non-coding upstream 252852 21397647 ~ 21399003 (+)
G176542 NA non-coding upstream 497000 21151267 ~ 21154855 (+)
G176507 NA non-coding upstream 714563 20936806 ~ 20937292 (+)
G176477 NA non-coding upstream 1149507 20500466 ~ 20502348 (+)
G176644 NA non-coding downstream 52 21655203 ~ 21655587 (+)
G176696 nop14 non-coding downstream 308945 21964096 ~ 21964825 (+)
G176702 NA non-coding downstream 315997 21971148 ~ 21971498 (+)
G176703 NA non-coding downstream 316487 21971638 ~ 21971985 (+)
G176704 NA non-coding downstream 316958 21972109 ~ 21972443 (+)
G176526 NA other upstream 704800 20946684 ~ 20947055 (+)
pappaa pappa other upstream 1031069 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 1737175 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 2249476 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 2928070 18676021 ~ 18723785 (+)
G176753 NA other downstream 623729 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 841262 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 876757 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 1343102 22998253 ~ 23008834 (+)
G177094 NA other downstream 1527522 23182673 ~ 23184262 (+)

Expression


Co-expression Network