rxraa (rxra,LOC102786191,LOC102297781)


Basic Information

Item Value
gene id rxraa
gene name rxra,LOC102786191,LOC102297781
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 11183862 ~ 11417652 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778992.1
CGCGTTGGTGGGAGTACCCCCTGCACAGGTCCCTTTTGCAGTGCAGCTCCAGTAGTTGGAGTTGCTGTACACCGGAGCACGAGAGGGAGAGGAGCGCGAGCGCAGCAGATGAGTGAGCGAACAGAGGTAGAGACCATTAGGGTTATCTTTTGAGACTATCACACGGCGACCTGTCACTTTTACGCTTCGTGCCGAGTCTACTTGAAGAGAACCGCAGCAggagcagcggcagcagcagcagcagccctggTCCGGTCTGGTCTGCTCGAGCAGCCGCCTGTGAAAAACTCCCAAACGCGGTCGTCTCAGCTGGCATGAGCTAACCTACCAGACAGACATGGAAACCAAACCGTTCCTGTCATTGGGGTTCCTGAAGCCCCAGTGCTCGTTGGCTCCTCCCATGCAGCGAGGCCGCTCGGGCGAGGCTTGTTCCTGTTTCAGCGGCATGTGTCCCCTCCATCAGCGCCGCCTATCCTCAGACTCATCGGGGCACTTGACGTCCTCGCCCCTGGGCTCACCCACATCCCACCGGGGAATGCACCCGTCTCTGCTCAGTCCGACGTCCATGGGGCCCTCTGGCTCTCTTCACTCTCCCATCAGCACGCTGAGTTCGCCCATGAACGGCCTGGCCTCCCCCTTCTCCGTCATCAGCTCGCCCATGGGTCCCCACTCCATGAACTCGCCCGGCATGGGCTACGGCCCCAGCGTCAGCCCCCAGatgttccAGCTGAACTCTCCGATGAACTCGGTCAGCAGCACGGAGGACATTAAGCCCCCGCTGGGCCTCAACGGCGTGATGAAGGTGCCCGCCCAGCCCTCAGGCACCATCCTGTCGCTCACCAAACACATCTGCGCCATCTGTGGTGACCGCTCCTCAGGTAAACACTATGGAGTATACAGCTGTGAGGGCTGCAAAGGTTTTTTCAAAAGGACAGTCCGCAAAGACCTGAGCTACACCTGTCGCGACAACAAGGACTGTGTCATTGACAAGCGCCAGAGGAATCGCTGCCAGTACTGCCGCTACCAGAAGTGTTTAGCCATGGGCATGAAGAGAGAAGTTTTGTTACATGCAGCCGTTCAGGAGGAGCGCCAGCGAGCCAAGGAGAGGAATGAGAACGAGGTGGAGTCCACCAGCTGCGCCAACGAGGACATGCCCGTGGAGAAGATTCTGGAGGCGGAGCAGGCGGTGGAACCCAAAACCGAGACGTACATAGAGACCAACCTCGGGGTGCCATCCAACTCGCCCAACGACCCAGTGACAAATATCTGTCAGGCAGCTGACAAACAGCTCTTTACTTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTTTCTGAGCTGCCACTGGACGACCAGGTCATCCTTCTACGAGCAGGTTGGAATGAACTTCTCATTGCATCATTTTCGCACCGTTCGATAACGATTAAAGACGGGATCCTGTTGGCGACCGGGCTGCACGTCCACCGCAACAGCGCCCATAGTGCTGGAGTGGGAGCCATCTTTGACAGAGTGCTCACAGAACTGGTGTCAAAGATGAGGGACATGCAGATGGATAAGACAGAACTGGGGTGCCTTCGAGCGATAGTCCTATTCAACCCAGACTCTAAAGGTCTGTCCAATCCAGGTGAGGTAGAAGCTCTGAGAGAAAAAGTGTACGCGTCTTTAGAGGCCTACTGCAAACAGAAGTACCCCGACCAGCCTGGCAGATTTGCCAAACTGTTGCTGCGGTTACCAGCGCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACTTGTTCTTCTTCAAGCTCATCGGCGACACGCCCATCGACACCTTCCTCATGGAGATGCTAGAAGCCCCCCATCAAATGACATAATAGCAGAGCTAACATCTCCCACCAGCCCTGGATCAGGAACGGAGTcctttttaagaaaaacaaaaaaaaacaaaaaaaacttctgtCTCCAGCTAAGGGACAGATGATGTGACGACTTTGGATGGAGAACTTCTCCCTTCCTCCTGTCCCTCCCTCTAGCCCTTCTCCCTTTTGATGTGTTTCCAAACAATGAATTCATCATGCCTATGGGTCTGTTTAATACCTtgtaaaaaattatataaataaggaatatatatataaatatatatagatgAAAATCACACGGCAACACAAGTGACAACCGTGGACTTAAAATAAGTTTGGACAGAAGACGAAAGAAACGTATTGAGCCATCGTTTTCATCCTTGCTTTTTTCCCTGCACCTTGACAAGAAAAAGCAGAGCTGGTCGGGTCTGAAACGCCCTCAGCTTTGCTTgcaggtatttaaaaaaaaacaaaaaacggcggTGATGTCATATTTGGACATTCAGCGTTGTGATCAGGACAATCGTGGACTGGGAGAGcct
>XM_039778993.1
CGCGTTGGTGGGAGTACCCCCTGCACAGGTCCCTTTTGCAGTGCAGCTCCAGTAGTTGGAGTTGCTGTACACCGGAGCACGAGAGGGAGAGGAGCGCGAGCGCAGCAGATGAGTGAGCGAACAGAGGTAGAGACCATTAGGGTTATCTTTTGAGACTATCACACGGCGACCTGTCACTTTTACGCTTCGTGCCGAGTCTACTTGAAGAGAACCGCAGCAggagcagcggcagcagcagcagcagccctggTCCGGTCTGGTCTGCTCGAGCAGCCGCCTGTGAAAAACTCCCAAACGCGGTCGTCTCAGCTGGCATGAGCTAACCTACCAGACAGACATGGAAACCAAACCGTTCCTGTCATTGGGGTTCCTGAAGCCCCAGTGCTCGTTGGCTCCTCCCATGCAGCGAGGCCGCTCGGGCGAGGCTTGTTCCTGTTTCAGCGGCATGTGTCCCCTCCATCAGCGCCGCCTATCCTCAGACTCATCGGGGCACTTGACGTCCTCGCCCCTGGGCTCACCCACATCCCACCGGGGAATGCACCCGTCTCTGCTCAGTCCGACGTCCATGGGGCCCTCTGGCTCTCTTCACTCTCCCATCAGCACGCTGAGTTCGCCCATGAACGGCCTGGCCTCCCCCTTCTCCGTCATCAGCTCGCCCATGGGTCCCCACTCCATGAACTCGCCCGGCATGGGCTACGGCCCCAGCGTCAGCCCCCAGCTGAACTCTCCGATGAACTCGGTCAGCAGCACGGAGGACATTAAGCCCCCGCTGGGCCTCAACGGCGTGATGAAGGTGCCCGCCCAGCCCTCAGGCACCATCCTGTCGCTCACCAAACACATCTGCGCCATCTGTGGTGACCGCTCCTCAGGTAAACACTATGGAGTATACAGCTGTGAGGGCTGCAAAGGTTTTTTCAAAAGGACAGTCCGCAAAGACCTGAGCTACACCTGTCGCGACAACAAGGACTGTGTCATTGACAAGCGCCAGAGGAATCGCTGCCAGTACTGCCGCTACCAGAAGTGTTTAGCCATGGGCATGAAGAGAGAAGTTTTGTTACATGCAGCCGTTCAGGAGGAGCGCCAGCGAGCCAAGGAGAGGAATGAGAACGAGGTGGAGTCCACCAGCTGCGCCAACGAGGACATGCCCGTGGAGAAGATTCTGGAGGCGGAGCAGGCGGTGGAACCCAAAACCGAGACGTACATAGAGACCAACCTCGGGGTGCCATCCAACTCGCCCAACGACCCAGTGACAAATATCTGTCAGGCAGCTGACAAACAGCTCTTTACTTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTTTCTGAGCTGCCACTGGACGACCAGGTCATCCTTCTACGAGCAGGTTGGAATGAACTTCTCATTGCATCATTTTCGCACCGTTCGATAACGATTAAAGACGGGATCCTGTTGGCGACCGGGCTGCACGTCCACCGCAACAGCGCCCATAGTGCTGGAGTGGGAGCCATCTTTGACAGAGTGCTCACAGAACTGGTGTCAAAGATGAGGGACATGCAGATGGATAAGACAGAACTGGGGTGCCTTCGAGCGATAGTCCTATTCAACCCAGACTCTAAAGGTCTGTCCAATCCAGGTGAGGTAGAAGCTCTGAGAGAAAAAGTGTACGCGTCTTTAGAGGCCTACTGCAAACAGAAGTACCCCGACCAGCCTGGCAGATTTGCCAAACTGTTGCTGCGGTTACCAGCGCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACTTGTTCTTCTTCAAGCTCATCGGCGACACGCCCATCGACACCTTCCTCATGGAGATGCTAGAAGCCCCCCATCAAATGACATAATAGCAGAGCTAACATCTCCCACCAGCCCTGGATCAGGAACGGAGTcctttttaagaaaaacaaaaaaaaacaaaaaaaacttctgtCTCCAGCTAAGGGACAGATGATGTGACGACTTTGGATGGAGAACTTCTCCCTTCCTCCTGTCCCTCCCTCTAGCCCTTCTCCCTTTTGATGTGTTTCCAAACAATGAATTCATCATGCCTATGGGTCTGTTTAATACCTtgtaaaaaattatataaataaggaatatatatataaatatatatagatgAAAATCACACGGCAACACAAGTGACAACCGTGGACTTAAAATAAGTTTGGACAGAAGACGAAAGAAACGTATTGAGCCATCGTTTTCATCCTTGCTTTTTTCCCTGCACCTTGACAAGAAAAAGCAGAGCTGGTCGGGTCTGAAACGCCCTCAGCTTTGCTTgcaggtatttaaaaaaaaacaaaaaacggcggTGATGTCATATTTGGACATTCAGCGTTGTGATCAGGACAATCGTGGACTGGGAGAGcct
>XM_039778994.1
GCGTTGGTGGGAGTACCCCCTGCACAGGTCCCTTTTGCAGTGCAGCTCCAGTAGTTGGAGTTGCTGTACACCGGAGCACGAGAGGGAGAGGAGCGCGAGCGCAGCAGATGAGTGAGCGAACAGAGGTAGAGACCATTAGGGTTATCTTTTGAGACTATCACACGGCGACCTGTCACTTTTACGCTTCGTGCCGAGTCTACTTGAAGAGAACCGCAGCAggagcagcggcagcagcagcagcagccctggTCCGGTCTGGTCTGCTCGAGCAGCCGCCTGTGAAAAACTCCCAAACGCGGTCGTCTCAGCTGGCATGAGCTAACCTACCAGACAGACATGGAAACCAAACCGTTCCTGTCATTGGGGTTCCTGAAGCCCCAGTGCTCGTTGGCTCCTCCCATGCAGCGAGGCCGCTCGGGCGAGGCTTGTTCCTGTTTCAGCGGCATGTGTCCCCTCCATCAGCGCCGCCTATCCTCAGACTCATCGGGGCACTTGACGTCCTCGCCCCTGGGCTCACCCACATCCCACCGGGGAATGCACCCGTCTCTGCTCAGTCCGACGTCCATGGGGCCCTCTGGCTCTCTTCACTCTCCCATCAGCACGCTGAGTTCGCCCATGAACGGCCTGGCCTCCCCCTTCTCCGTCATCAGCTCGCCCATGGGTCCCCACTCCATGAACTCGCCCGGCATGGGCTACGGCCCCAGCGTCAGCCCCCAGatgttccAGCTGAACTCTCCGATGAACTCGGTCAGCAGCACGGAGGACATTAAGCCCCCGCTGGGCCTCAACGGCGTGATGAAGGTGCCCGCCCAGCCCTCAGGCACCATCCTGTCGCTCACCAAACACATCTGCGCCATCTGTGGTGACCGCTCCTCAGGTAAACACTATGGAGTATACAGCTGTGAGGGCTGCAAAGGTTTTTTCAAAAGGACAGTCCGCAAAGACCTGAGCTACACCTGTCGCGACAACAAGGACTGTGTCATTGACAAGCGCCAGAGGAATCGCTGCCAGTACTGCCGCTACCAGAAGTGTTTAGCCATGGGCATGAAGAGAGAAGCCGTTCAGGAGGAGCGCCAGCGAGCCAAGGAGAGGAATGAGAACGAGGTGGAGTCCACCAGCTGCGCCAACGAGGACATGCCCGTGGAGAAGATTCTGGAGGCGGAGCAGGCGGTGGAACCCAAAACCGAGACGTACATAGAGACCAACCTCGGGGTGCCATCCAACTCGCCCAACGACCCAGTGACAAATATCTGTCAGGCAGCTGACAAACAGCTCTTTACTTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTTTCTGAGCTGCCACTGGACGACCAGGTCATCCTTCTACGAGCAGGTTGGAATGAACTTCTCATTGCATCATTTTCGCACCGTTCGATAACGATTAAAGACGGGATCCTGTTGGCGACCGGGCTGCACGTCCACCGCAACAGCGCCCATAGTGCTGGAGTGGGAGCCATCTTTGACAGAGTGCTCACAGAACTGGTGTCAAAGATGAGGGACATGCAGATGGATAAGACAGAACTGGGGTGCCTTCGAGCGATAGTCCTATTCAACCCAGACTCTAAAGGTCTGTCCAATCCAGGTGAGGTAGAAGCTCTGAGAGAAAAAGTGTACGCGTCTTTAGAGGCCTACTGCAAACAGAAGTACCCCGACCAGCCTGGCAGATTTGCCAAACTGTTGCTGCGGTTACCAGCGCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACTTGTTCTTCTTCAAGCTCATCGGCGACACGCCCATCGACACCTTCCTCATGGAGATGCTAGAAGCCCCCCATCAAATGACATAATAGCAGAGCTAACATCTCCCACCAGCCCTGGATCAGGAACGGAGTcctttttaagaaaaacaaaaaaaaacaaaaaaaacttctgtCTCCAGCTAAGGGACAGATGATGTGACGACTTTGGATGGAGAACTTCTCCCTTCCTCCTGTCCCTCCCTCTAGCCCTTCTCCCTTTTGATGTGTTTCCAAACAATGAATTCATCATGCCTATGGGTCTGTTTAATACCTtgtaaaaaattatataaataaggaatatatatataaatatatatagatgAAAATCACACGGCAACACAAGTGACAACCGTGGACTTAAAATAAGTTTGGACAGAAGACGAAAGAAACGTATTGAGCCATCGTTTTCATCCTTGCTTTTTTCCCTGCACCTTGACAAGAAAAAGCAGAGCTGGTCGGGTCTGAAACGCCCTCAGCTTTGCTTgcaggtatttaaaaaaaaacaaaaaacggcggTGATGTCATATTTGGACATTCAGCGTTGTGATCAGGACAATCGTGGACTGGGAGAGcct
>XM_039778995.1
GCGTTGGTGGGAGTACCCCCTGCACAGGTCCCTTTTGCAGTGCAGCTCCAGTAGTTGGAGTTGCTGTACACCGGAGCACGAGAGGGAGAGGAGCGCGAGCGCAGCAGATGAGTGAGCGAACAGAGGTAGAGACCATTAGGGTTATCTTTTGAGACTATCACACGGCGACCTGTCACTTTTACGCTTCGTGCCGAGTCTACTTGAAGAGAACCGCAGCAggagcagcggcagcagcagcagcagccctggTCCGGTCTGGTCTGCTCGAGCAGCCGCCTGTGAAAAACTCCCAAACGCGGTCGTCTCAGCTGGCATGAGCTAACCTACCAGACAGACATGGAAACCAAACCGTTCCTGTCATTGGGGTTCCTGAAGCCCCAGTGCTCGTTGGCTCCTCCCATGCAGCGAGGCCGCTCGGGCGAGGCTTGTTCCTGTTTCAGCGGCATGTGTCCCCTCCATCAGCGCCGCCTATCCTCAGACTCATCGGGGCACTTGACGTCCTCGCCCCTGGGCTCACCCACATCCCACCGGGGAATGCACCCGTCTCTGCTCAGTCCGACGTCCATGGGGCCCTCTGGCTCTCTTCACTCTCCCATCAGCACGCTGAGTTCGCCCATGAACGGCCTGGCCTCCCCCTTCTCCGTCATCAGCTCGCCCATGGGTCCCCACTCCATGAACTCGCCCGGCATGGGCTACGGCCCCAGCGTCAGCCCCCAGCTGAACTCTCCGATGAACTCGGTCAGCAGCACGGAGGACATTAAGCCCCCGCTGGGCCTCAACGGCGTGATGAAGGTGCCCGCCCAGCCCTCAGGCACCATCCTGTCGCTCACCAAACACATCTGCGCCATCTGTGGTGACCGCTCCTCAGGTAAACACTATGGAGTATACAGCTGTGAGGGCTGCAAAGGTTTTTTCAAAAGGACAGTCCGCAAAGACCTGAGCTACACCTGTCGCGACAACAAGGACTGTGTCATTGACAAGCGCCAGAGGAATCGCTGCCAGTACTGCCGCTACCAGAAGTGTTTAGCCATGGGCATGAAGAGAGAAGCCGTTCAGGAGGAGCGCCAGCGAGCCAAGGAGAGGAATGAGAACGAGGTGGAGTCCACCAGCTGCGCCAACGAGGACATGCCCGTGGAGAAGATTCTGGAGGCGGAGCAGGCGGTGGAACCCAAAACCGAGACGTACATAGAGACCAACCTCGGGGTGCCATCCAACTCGCCCAACGACCCAGTGACAAATATCTGTCAGGCAGCTGACAAACAGCTCTTTACTTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTTTCTGAGCTGCCACTGGACGACCAGGTCATCCTTCTACGAGCAGGTTGGAATGAACTTCTCATTGCATCATTTTCGCACCGTTCGATAACGATTAAAGACGGGATCCTGTTGGCGACCGGGCTGCACGTCCACCGCAACAGCGCCCATAGTGCTGGAGTGGGAGCCATCTTTGACAGAGTGCTCACAGAACTGGTGTCAAAGATGAGGGACATGCAGATGGATAAGACAGAACTGGGGTGCCTTCGAGCGATAGTCCTATTCAACCCAGACTCTAAAGGTCTGTCCAATCCAGGTGAGGTAGAAGCTCTGAGAGAAAAAGTGTACGCGTCTTTAGAGGCCTACTGCAAACAGAAGTACCCCGACCAGCCTGGCAGATTTGCCAAACTGTTGCTGCGGTTACCAGCGCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACTTGTTCTTCTTCAAGCTCATCGGCGACACGCCCATCGACACCTTCCTCATGGAGATGCTAGAAGCCCCCCATCAAATGACATAATAGCAGAGCTAACATCTCCCACCAGCCCTGGATCAGGAACGGAGTcctttttaagaaaaacaaaaaaaaacaaaaaaaacttctgtCTCCAGCTAAGGGACAGATGATGTGACGACTTTGGATGGAGAACTTCTCCCTTCCTCCTGTCCCTCCCTCTAGCCCTTCTCCCTTTTGATGTGTTTCCAAACAATGAATTCATCATGCCTATGGGTCTGTTTAATACCTtgtaaaaaattatataaataaggaatatatatataaatatatatagatgAAAATCACACGGCAACACAAGTGACAACCGTGGACTTAAAATAAGTTTGGACAGAAGACGAAAGAAACGTATTGAGCCATCGTTTTCATCCTTGCTTTTTTCCCTGCACCTTGACAAGAAAAAGCAGAGCTGGTCGGGTCTGAAACGCCCTCAGCTTTGCTTgcaggtatttaaaaaaaaacaaaaaacggcggTGATGTCATATTTGGACATTCAGCGTTGTGATCAGGACAATCGTGGACTGGGAGAGcct
>XM_039778996.1
GTTGCAACAATGGCAACTCCCTGCTTCACTTCACCAAGGGTTCCTGAAGCCCCAGTGCTCGTTGGCTCCTCCCATGCAGCGAGGCCGCTCGGGCGAGGCTTGTTCCTGTTTCAGCGGCATGTGTCCCCTCCATCAGCGCCGCCTATCCTCAGACTCATCGGGGCACTTGACGTCCTCGCCCCTGGGCTCACCCACATCCCACCGGGGAATGCACCCGTCTCTGCTCAGTCCGACGTCCATGGGGCCCTCTGGCTCTCTTCACTCTCCCATCAGCACGCTGAGTTCGCCCATGAACGGCCTGGCCTCCCCCTTCTCCGTCATCAGCTCGCCCATGGGTCCCCACTCCATGAACTCGCCCGGCATGGGCTACGGCCCCAGCGTCAGCCCCCAGatgttccAGCTGAACTCTCCGATGAACTCGGTCAGCAGCACGGAGGACATTAAGCCCCCGCTGGGCCTCAACGGCGTGATGAAGGTGCCCGCCCAGCCCTCAGGCACCATCCTGTCGCTCACCAAACACATCTGCGCCATCTGTGGTGACCGCTCCTCAGGTAAACACTATGGAGTATACAGCTGTGAGGGCTGCAAAGGTTTTTTCAAAAGGACAGTCCGCAAAGACCTGAGCTACACCTGTCGCGACAACAAGGACTGTGTCATTGACAAGCGCCAGAGGAATCGCTGCCAGTACTGCCGCTACCAGAAGTGTTTAGCCATGGGCATGAAGAGAGAAGTTTTGTTACATGCAGCCGTTCAGGAGGAGCGCCAGCGAGCCAAGGAGAGGAATGAGAACGAGGTGGAGTCCACCAGCTGCGCCAACGAGGACATGCCCGTGGAGAAGATTCTGGAGGCGGAGCAGGCGGTGGAACCCAAAACCGAGACGTACATAGAGACCAACCTCGGGGTGCCATCCAACTCGCCCAACGACCCAGTGACAAATATCTGTCAGGCAGCTGACAAACAGCTCTTTACTTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTTTCTGAGCTGCCACTGGACGACCAGGTCATCCTTCTACGAGCAGGTTGGAATGAACTTCTCATTGCATCATTTTCGCACCGTTCGATAACGATTAAAGACGGGATCCTGTTGGCGACCGGGCTGCACGTCCACCGCAACAGCGCCCATAGTGCTGGAGTGGGAGCCATCTTTGACAGAGTGCTCACAGAACTGGTGTCAAAGATGAGGGACATGCAGATGGATAAGACAGAACTGGGGTGCCTTCGAGCGATAGTCCTATTCAACCCAGACTCTAAAGGTCTGTCCAATCCAGGTGAGGTAGAAGCTCTGAGAGAAAAAGTGTACGCGTCTTTAGAGGCCTACTGCAAACAGAAGTACCCCGACCAGCCTGGCAGATTTGCCAAACTGTTGCTGCGGTTACCAGCGCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACTTGTTCTTCTTCAAGCTCATCGGCGACACGCCCATCGACACCTTCCTCATGGAGATGCTAGAAGCCCCCCATCAAATGACATAATAGCAGAGCTAACATCTCCCACCAGCCCTGGATCAGGAACGGAGTcctttttaagaaaaacaaaaaaaaacaaaaaaaacttctgtCTCCAGCTAAGGGACAGATGATGTGACGACTTTGGATGGAGAACTTCTCCCTTCCTCCTGTCCCTCCCTCTAGCCCTTCTCCCTTTTGATGTGTTTCCAAACAATGAATTCATCATGCCTATGGGTCTGTTTAATACCTtgtaaaaaattatataaataaggaatatatatataaatatatatagatgAAAATCACACGGCAACACAAGTGACAACCGTGGACTTAAAATAAGTTTGGACAGAAGACGAAAGAAACGTATTGAGCCATCGTTTTCATCCTTGCTTTTTTCCCTGCACCTTGACAAGAAAAAGCAGAGCTGGTCGGGTCTGAAACGCCCTCAGCTTTGCTTgcaggtatttaaaaaaaaacaaaaaacggcggTGATGTCATATTTGGACATTCAGCGTTGTGATCAGGACAATCGTGGACTGGGAGAGcct

Function

symbol description
rxra Enables several functions, including nuclear receptor activity; protein domain specific binding activity; and retinoic acid binding activity. Contributes to vitamin D response element binding activity. Involved in several processes, including intracellular receptor signaling pathway; regulation of transcription, DNA-templated; and response to retinoic acid. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in chromatin and nucleus. Part of RNA polymerase II transcription regulator complex and receptor complex. Implicated in pancreatic cancer. Biomarker of pancreatic ductal carcinoma.

NR:

description
PREDICTED: retinoic acid receptor RXR-alpha isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08524 RXRA, NR2B1; retinoid X receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778992.1 True 2379 mRNA 0.54 11 11183862 11309302
XM_039778993.1 False 2370 mRNA 0.54 11 11183862 11309302
XM_039778994.1 False 2363 mRNA 0.54 11 11183862 11309301
XM_039778995.1 False 2354 mRNA 0.54 11 11183862 11309301
XM_039778996.1 False 2052 mRNA 0.53 11 11183862 11417652

Neighbor

gene id symbol gene type direction distance location
vav2 vav2 coding downstream 42937 10913714 ~ 11140925 (-)
si:ch211-127i16.2 LOC103374795,LOC101469412,LOC102289489,LOC100706625,LOC102789715 coding downstream 359134 10772857 ~ 10824728 (-)
gsna gsn coding downstream 957481 10201066 ~ 10226381 (-)
barhl1b barhl1,LOC100712077,LOC102792687 coding downstream 1033859 10143070 ~ 10150003 (-)
gfi1b gfi1b coding downstream 1184295 9993598 ~ 9999567 (-)
LOC120544994 LOC103357302 coding upstream 634983 12052635 ~ 12053579 (-)
LOC120544995 LOC103357302,LOC104927697 coding upstream 637032 12054684 ~ 12056612 (-)
prkab1a prkab1,LOC103357303 coding upstream 640079 12057731 ~ 12068419 (-)
phf24 phf24 coding upstream 659926 12077578 ~ 12114065 (-)
pigo pigo coding upstream 744641 12162293 ~ 12173384 (-)
G174309 NA non-coding downstream 4353 11177513 ~ 11179509 (-)
G174246 NA non-coding downstream 635891 10516654 ~ 10547971 (-)
G174245 NA non-coding downstream 670226 10510586 ~ 10513636 (-)
G174233 NA non-coding downstream 679286 10502977 ~ 10504576 (-)
G174210 NA non-coding downstream 805009 10378594 ~ 10378853 (-)
G174324 NA non-coding upstream 203795 11621447 ~ 11621660 (-)
G174325 NA non-coding upstream 241784 11659436 ~ 11659824 (-)
G174327 NA non-coding upstream 242873 11660525 ~ 11660862 (-)
G174335 NA non-coding upstream 328419 11746071 ~ 11746420 (-)
G174341 NA non-coding upstream 348578 11766230 ~ 11766460 (-)
LOC120545042 NA other downstream 19368 11153767 ~ 11164494 (-)
adra1ab LOC104947653,LOC100705829 other downstream 788118 10378956 ~ 10395744 (-)
gtf3c4 gtf3c4,LOC102793669 other downstream 1075573 10097251 ~ 10108289 (-)
grin1a grin1a,LOC107600932,LOC103389281,LOC105024190,LOC106513393,LOC100534577,LOC101475684,LOC104936329,LOC102201489,LOC102777117,LOC102302700 other downstream 1280855 9861001 ~ 9903007 (-)
G174120 NA other downstream 1340363 9842812 ~ 9843499 (-)
G174439 NA other upstream 939276 12356928 ~ 12357890 (-)
G174442 lpar1 other upstream 972903 12390555 ~ 12391484 (-)
tmem267 tmem267 other upstream 1213573 12631225 ~ 12637494 (-)
cntfr cntfr,LOC108232720,LOC103473535 other upstream 1228634 12646286 ~ 12918560 (-)
ier3ip1 ier3ip1,LOC106633120,LOC102779563,LOC104954869 other upstream 2023628 13441280 ~ 13444079 (-)

Expression


Co-expression Network