LOC120545046 (LOC101480421)


Basic Information

Item Value
gene id LOC120545046
gene name LOC101480421
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5566039 ~ 5573779 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778997.1
GGCCACGCCGTAGCTGTGGCAGGAAACATCGCCTTTCTGTTTGGAGGAGCGTCTAGCATTAACCAAGAggaGGACATCGCTCTTTACTTCAGCGACTTCTACATGCTAACAGTTTCTCCTGAAGAAGTGACGTGGGAGGAGATTCCACAGAGTGGGGAAGTTCCCTCAGCCAGAGAAGGACACACTCTTAGTGTTGTCAAAGGGAAGCTGTATCTGTTTGGAGGAGTGTCCAGTCCTGAAGCCACTGAGTGTCTCCCAGGAGTCTACAGCTTTGATATTGTATCTCTGACTTGGGAGTGCTTAGCAATCGGGGGTGTGGCCCTCAAAACCCTAAGACACTGCTCTGTTGCCATGGGAGACAACATCTACGTGTACGGAGGCATTTTCGAAGGGAATCCAATCGACGATCTCATGGTCTTCAACACAGCATCTCTCACCTGGACGCCGGTAAAAACTAGCGGATCGCTGCCGCCTGCCCTGTAAGACACTTATTAGTTTCACA

Function

NR:

description
rab9 effector protein with kelch motifs isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778997.1 True 502 mRNA 0.51 6 5566039 5573779

Neighbor

gene id symbol gene type direction distance location
LOC120545938 LOC101480421,LOC106530361 coding downstream 8063 5532385 ~ 5557976 (-)
pam pam coding downstream 252606 5177157 ~ 5313433 (-)
derl2 derl2 coding downstream 440602 5100579 ~ 5125437 (-)
LOC120545498 smarcb1b,LOC104928041,LOC103358289,LOC106535110,LOC100704669,LOC101070741 coding downstream 465975 5043560 ~ 5100064 (-)
ppp6c ppp6c,LOC102313764,LOC102783418,LOC100701794,LOC104928043,LOC103372694,LOC101475652,LOC108228845 coding downstream 554729 5002320 ~ 5011310 (-)
ccni ccni,LOC106529109,LOC106925549,LOC106963610 coding upstream 285194 5858973 ~ 5885428 (-)
LOC120545631 NA coding upstream 326673 5900452 ~ 5906700 (-)
LOC120545633 NA coding upstream 333580 5907359 ~ 5919472 (-)
fech fech coding upstream 723962 6297741 ~ 6322153 (-)
nars1 nars coding upstream 754628 6328407 ~ 6347650 (-)
G173131 NA non-coding downstream 42279 5523523 ~ 5523760 (-)
LOC120545002 NA non-coding downstream 67652 5494230 ~ 5498387 (-)
G173112 NA non-coding downstream 100793 5462651 ~ 5465246 (-)
G173104 NA non-coding downstream 123833 5434217 ~ 5442206 (-)
G173093 NA non-coding downstream 185302 5378877 ~ 5380737 (-)
G173136 NA non-coding upstream 12317 5586096 ~ 5586533 (-)
G173165 NA non-coding upstream 107658 5681437 ~ 5681934 (-)
G173191 NA non-coding upstream 265450 5839229 ~ 5842878 (-)
G173192 NA non-coding upstream 273168 5846947 ~ 5849235 (-)
G173228 NA non-coding upstream 311984 5885763 ~ 5886449 (-)
LOC120545230 NA other downstream 165361 5396633 ~ 5400678 (-)
odf2a LOC103374699 other downstream 668682 4846279 ~ 4897357 (-)
G172920 NA other downstream 794736 4770817 ~ 4771303 (-)
dpm2 dpm2 other downstream 1006271 4552871 ~ 4559768 (-)
cdk9 cdk9 other downstream 1418226 4139166 ~ 4147813 (-)
LOC120544971 NA other upstream 794528 6368307 ~ 6374489 (-)
LOC120546140 NA other upstream 1247033 6820812 ~ 6820866 (-)
G173470 LOC103389048,LOC105418623 other upstream 1579091 7152870 ~ 7160087 (-)
G173727 LOC107687935 other upstream 2783944 8357723 ~ 8358027 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other upstream 3051703 8625482 ~ 8634067 (-)

Expression


Co-expression Network