ppp6c (ppp6c,LOC102313764,LOC102783418,LOC100701794,LOC104928043,LOC103372694,LOC101475652,LOC108228845)


Basic Information

Item Value
gene id ppp6c
gene name ppp6c,LOC102313764,LOC102783418,LOC100701794,LOC104928043,LOC103372694,LOC101475652,LOC108228845
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5002320 ~ 5011310 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779055.1
GTGGTTGCAAGTCGTCGTTAAAGAAGAAGaatagaagaggaagaagaaaaaaaaaggaaggaaggaacttgctAGCTGGCTAGCTAACTAGTTTAGCAATCTTCTGGTTTTAGCGTTTTGATAATGGCTCCTTTAGACCTTGATAAGTACGTTGAAATAGCGAGACACTGCAAATACCTGCCGGAAAATGATCTAAAGAGATTGTGTGATTATGTTTGTGATTTACTGCTGGAAGAATCAAATGTTCAGCCAGTCTCTACTCCAGTTACTGTTTGTGGAGATATTCATGGTCAGTTTTATGATCTTTGCGAGCTCTTCAGAACTGGAGGCCAAGTTCCAGACACAAATTATATTTTCATGGGAGACTTTGTAGACAGAGGATATTATAGCTTGGAGACGTTTACACATCTGCTAGCTTTAAAAGCAAAGTGGCCGGATCGTATCACACTTCTACGTGGAAATCACGAAAGCAGACAAATAACACAAGTGTACGGCTTTTATGATGAATGCCAAACAAAATATGGAAACGCAAATGCCTGGCGGTATTGCACAAAAGTGTTTGACATGCTGACTGTGGCCGCTTTGATAGATGAGCAGGTCCTGTGTGTACATGGTGGTCTTTCACCTGACATTAAGACGTTGGACCAGATCCGCACCATTGAACGCAACCAGGAGATTCCCCACAAGGGGGCCTTCTGTGATCTTGTGTGGTCAGATCCGGAGGATGTGGACACCTGGGCTATCAGTCCACGAGGTGCAGGCTGGCTGTTCGGCTCCAAGGTTACTAATGAGtttgTGCACATCAACAGTCTGAAGCTCATCTGCCGTGCACATCAGCTTGTTCATGAAGGCTACAAGTTCATGTTTGACGAAAAGCTGGTGACAGTGTGGTCGGCGCCCAACTACTGCTACCGCTGCGGAAACATTGCGTCTATCATGGTGTTCAAGGATGTCAACAGACGAGAACCCAAGCTTTTCCGTGCTGTCCCTGACTCTGAGCGCGTCATACCACCCCGAACAACCACTCCCTACTTCCTCTAATGACAAGAGCcagttctctctcctctccaccctcTGGAGATCTCAACTcttaacatattttttaaaattcATTGAAGTAACATCCCTTCAGGTCTACAGAATCTTAAGTAGCTACAGTTTGTATGCACTTACTCACTTTGTTCTGTTATGAAGGTAAACATCCTCTTCTCCCCCTCAATGAGaataccttttttaaatttcttcatattttaacTAGAAAATGTTGAATGGTTTAATTTTGATGTTATGTATCCCACTTAAGCAAATAAAACCTTTTAAACTGGTGGTAACTGCCAATAATGTGTTCAAATAAAgtgatatatattttatttat
>XM_039779056.1
GAGTGGTTGCAAGTCGTCGTTAAAGAAGAAGaatagaagaggaagaagaaaaaaaaaggaaggaaggaacttgctAGCTGGCTAGCTAACTAGTTTAGCAATCTTCTGGTTTTAGCGTTTTGATAATGGCTCCTTTAGACCTTGATAAGTACGTTGAAATAGCGAGACACTGCAAATACCTGCCGGAAAATGATCTAAAGTTTTATGATCTTTGCGAGCTCTTCAGAACTGGAGGCCAAGTTCCAGACACAAATTATATTTTCATGGGAGACTTTGTAGACAGAGGATATTATAGCTTGGAGACGTTTACACATCTGCTAGCTTTAAAAGCAAAGTGGCCGGATCGTATCACACTTCTACGTGGAAATCACGAAAGCAGACAAATAACACAAGTGTACGGCTTTTATGATGAATGCCAAACAAAATATGGAAACGCAAATGCCTGGCGGTATTGCACAAAAGTGTTTGACATGCTGACTGTGGCCGCTTTGATAGATGAGCAGGTCCTGTGTGTACATGGTGGTCTTTCACCTGACATTAAGACGTTGGACCAGATCCGCACCATTGAACGCAACCAGGAGATTCCCCACAAGGGGGCCTTCTGTGATCTTGTGTGGTCAGATCCGGAGGATGTGGACACCTGGGCTATCAGTCCACGAGGTGCAGGCTGGCTGTTCGGCTCCAAGGTTACTAATGAGtttgTGCACATCAACAGTCTGAAGCTCATCTGCCGTGCACATCAGCTTGTTCATGAAGGCTACAAGTTCATGTTTGACGAAAAGCTGGTGACAGTGTGGTCGGCGCCCAACTACTGCTACCGCTGCGGAAACATTGCGTCTATCATGGTGTTCAAGGATGTCAACAGACGAGAACCCAAGCTTTTCCGTGCTGTCCCTGACTCTGAGCGCGTCATACCACCCCGAACAACCACTCCCTACTTCCTCTAATGACAAGAGCcagttctctctcctctccaccctcTGGAGATCTCAACTcttaacatattttttaaaattcATTGAAGTAACATCCCTTCAGGTCTACAGAATCTTAAGTAGCTACAGTTTGTATGCACTTACTCACTTTGTTCTGTTATGAAGGTAAACATCCTCTTCTCCCCCTCAATGAGaataccttttttaaatttcttcatattttaacTAGAAAATGTTGAATGGTTTAATTTTGATGTTATGTATCCCACTTAAGCAAATAAAACCTTTTAAACTGGTGGTAACTGCCAATAATGTGTTCAAATAAAgtgatatatattttatttat

Function

symbol description
ppp6c Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within response to yeast. Orthologous to human PPP6C (protein phosphatase 6 catalytic subunit).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit-like isoform X1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0016311 dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779055.1 True 1375 mRNA 0.42 7 5002320 5011308
XM_039779056.1 False 1281 mRNA 0.43 6 5002320 5011310

Neighbor

gene id symbol gene type direction distance location
scai scai coding downstream 4363 4909583 ~ 4997957 (-)
sptan1 sptan1 coding downstream 170149 4771749 ~ 4832171 (-)
pkn3 LOC103374969 coding downstream 270007 4677906 ~ 4732313 (-)
naif1 naif1 coding downstream 389784 4607724 ~ 4612536 (-)
fam102ab fam102a,LOC102785250,LOC100701617,LOC101484077 coding downstream 403088 4563357 ~ 4599232 (-)
LOC120545498 smarcb1b,LOC104928041,LOC103358289,LOC106535110,LOC100704669,LOC101070741 coding upstream 32250 5043560 ~ 5100064 (-)
derl2 derl2 coding upstream 89269 5100579 ~ 5125437 (-)
pam pam coding upstream 165847 5177157 ~ 5313433 (-)
LOC120545938 LOC101480421,LOC106530361 coding upstream 521075 5532385 ~ 5557976 (-)
LOC120545046 LOC101480421 coding upstream 554729 5566039 ~ 5573779 (-)
G172944 NA non-coding downstream 41532 4954205 ~ 4960788 (-)
G172929 NA non-coding downstream 93740 4905888 ~ 4908580 (-)
G172917 NA non-coding downstream 240211 4761714 ~ 4762109 (-)
G172916 NA non-coding downstream 245225 4756696 ~ 4757095 (-)
G172915 NA non-coding downstream 247538 4754453 ~ 4754782 (-)
G172948 NA non-coding upstream 2143 5013453 ~ 5013712 (-)
G172950 NA non-coding upstream 5697 5017007 ~ 5017207 (-)
G172952 NA non-coding upstream 23537 5034847 ~ 5038123 (-)
G172981 NA non-coding upstream 118509 5129819 ~ 5130123 (-)
G172982 NA non-coding upstream 123020 5134330 ~ 5134613 (-)
odf2a LOC103374699 other downstream 104963 4846279 ~ 4897357 (-)
G172920 NA other downstream 231017 4770817 ~ 4771303 (-)
dpm2 dpm2 other downstream 442552 4552871 ~ 4559768 (-)
cdk9 cdk9 other downstream 854507 4139166 ~ 4147813 (-)
G172620 NA other downstream 1058489 3886588 ~ 3943831 (-)
LOC120545230 NA other upstream 385323 5396633 ~ 5400678 (-)
LOC120544971 NA other upstream 1356997 6368307 ~ 6374489 (-)
LOC120546140 NA other upstream 1809502 6820812 ~ 6820866 (-)
G173470 LOC103389048,LOC105418623 other upstream 2141560 7152870 ~ 7160087 (-)
G173727 LOC107687935 other upstream 3346413 8357723 ~ 8358027 (-)

Expression


Co-expression Network