lman2la (lman2l,LOC108231067)


Basic Information

Item Value
gene id lman2la
gene name lman2l,LOC108231067
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19894116 ~ 19900260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779419.1
ACCAACGATGGCTGCCGCCAGCATGAGCCATTATTACAGGGAGCCCAGATCACCATTCAGACGGAAAATAATGACTTTTAAATCATACTGGACTTTCGCTTTTCTAATTTGTACTGCAAGCAAGTGTTTGGCTGACGATGATCATGAAATGGAAGAGTTTTTGAAGCGGGAGTATTCCCTTTCCAAGCCATACCAAGGTGTGGGATCCTTGGGCTCCTCGCACTGGGAGCTGATGGGGGATTCCATGGTAACCACCGAGCAGGTGCGCCTCACACCTGACATGCAGAGCCGGCAGGGGGCAGTGTGGAGCCGCCTTccTTGCCATCTGACAGATTGGGAGATGCAGGTGCACTTTAAGATTCACGGGCAAGGGAAGAAGAACCTGAATGGGGATGGGCTAGCCATATGGTACACTAAGGAACGTGCACAAAAAGGTCCTGTATTTGGAAATATGGACAACTTCACTGGCTTGGGTGTGTTTGTGGACACGTATCCTAATGAGGAGAAACACCTAGAGGCGCAGAAGAAAAGATATACTCCACGCACACAGAGGATTTTCCCCTTCGTTCTGGCTATGGTTGGGAACGGCAGCATCAGCTATGACCACGAGCGGGACGGTCGCCCCACAGAGCTTGGCGGCTGCAACGCCATGGTGCGCAACCTCAAACATGACACCTTCCTCTTCATCCGATACGTCCGCCGCAGGCTCACGGTGATGATAGACATCGACGGGCAACATGAGTGGAGGGACTGCCTGGACATACCCGGGGTGCGGCTTCCCAAAGGCTATTATTTTGGAGCTACAGCCATCACTGGAGACCTCTCAGATAACCATGATATAATTTCCCTGAAACTCTACCAACTGACGGTGTTGCGGAGTcgaaaggaagaggaagaggaggaagaagaggagataACCATACCCAGTGTGGATAACATTGAGCTACTCAgatTGGGTCAGACTGAAGAAGGGATGAGTGGGTTAGCTATTTTCTTCACCGTGTTCTTCTCCATGTTGGGCTGCATCTTCCTCATCGTTATCGGCCTGGTGGTCTACAGCCACTGGAGCGAGAGTCGACGCAAGCGCTTCTACtgagaaagaacaaaaaaagatggAGGTGGTGTCTACTGTGGTCCATGGACCCAACGGAAGTGAGACACCGCTGTTGCCCAGTAGAGCGCAGCAGGTTGTTTTCATCCTGAGGACAACACTATTTGAACAGAGGACGAAGTAGATGTATCACCTGCTACAAATAGCCATTGTCCAACTTTGCCATTGGTCGTCATGAAGCAGTAGGACTTTGTTTTTGTCCTGCCTGACACACACCAACTCGGCCTTACCATCTCCACCTCTGTACTTGTTACACAGCAGCAGACGTGCAGTATGACATCTAATGAGCAGCTACATAAATTTTAATTTTCACCGTTTGCTGCATATGACAACTTCAAATTTCTTTGAActatttttcagtttactgaTGTGATTTTATGGCTTTgagaaacataaatatataagcATCCAATGTGTCCCCACTCTACAGTGTGACTAACCATATAGCACTAAAAACCAATGATGCTATGCTTACTGTAGCTCATTGCTAACTCGACTGCTCTTTGAATTAGAAAAAGCATCTCCGAGTATACTATATAGTATGCTGTATATTCTCATCATGTAGTTGTAGTGTGCATGACATTTGTtggatattttttatgaatcaTCTAGGCTACCGCTGTTCTTCGTTACCATGATGCTTTAACTTTTATGTAAAGCATATGCATAAAACTGACCTGTCCCATTGATGCATGTGGCAAAGCAATTTCTTTTCAACAATATTATCTCTCACAAAATGTTTGTATTTATCACTGTTATGTGAGTATATGAGAAAATGgatcaaagtttttttgttgATCAGTTTAGAGCAAACTCTTGTTTTAAATAGATATatttaaatgtctgaaatgGACTTTGCACTGAAGAGAATTTGAATGACTACTTATTTATTGTAAATCATTTTTCTCTGCACACTGAACACTAAAattactttttgtttgtttctttagtGTTATATGTAAAAACACcacctctgtgtttctgtcataCGGTATATGCTTTTCCAGTGAACTGAACATGCTGGTTTGGCCTCAGGCTGCCTCCTTTGGATGGAGGTGTTGGCCGGGCCCTATCGACATCTGTACGCTCTGGAAATGGCTGCAGGCCTCATGTCAACatcatacattttttatgtggtgctttgttttcatttgtgcAATGAGTATTTTCCTGTAGCCACTTTGACAACCGCCCTACCttatttctgttctgtttgttttgtatgaCAACCGTGTGCCTCATATATCCATTCAGTGATCCATTAATTACGGTTTGTAACTATTCTTGACTTTGTCCTGAACCATTACTATTGCCTCCTTAAAGAGcaaatattgtttatttgtttgtttgacctttcagtgtgtgtgggcAACAACATCCTAGTTTTCGGATGACATAACATCCCGTCAATAATTCAGGCCAACCGTCTTGAGGCGCTTGTCACACAGCCATGTGATGATGCTCCAGATCAATATCTTAGCTTTGTCTCATGTCTGGGCAGGGCATGATTTTCACTTAAGTCCTCAAGGTTAATTTCTCCAATTTTTCAGGCTTTACAAATGTTTACAAGAAGATCCTGCAAAAGGCTACTTgaggttaacccttgtgttgtgttcCATCAACCTTGAAATTAAAcctgttttaaattgtaaaaa

Function

symbol description
lman2l Predicted to enable mannose binding activity. Involved in protein transport. Located in Golgi apparatus and endoplasmic reticulum membrane. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
VIP36-like protein isoform X2

GO: NA

KEGG:

id description
K10083 LMAN2L, VIPL; lectin, mannose-binding 2-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779419.1 True 2766 mRNA 0.44 9 19894116 19900260

Neighbor

gene id symbol gene type direction distance location
ddx54 NA coding upstream 368792 19516810 ~ 19525324 (+)
trnac-gca_32 NA coding upstream 376810 19517235 ~ 19517306 (+)
abl1 abl1 coding upstream 408010 19449563 ~ 19486106 (+)
exosc2 exosc2 coding upstream 446517 19441576 ~ 19447599 (+)
mlana mlana coding upstream 571877 19318972 ~ 19322239 (+)
pax8 pax8,LOC102780591 coding downstream 29311 19929571 ~ 19943843 (+)
LOC120545547 LOC103368295 coding downstream 63511 19963771 ~ 19970112 (+)
bspry bspry,LOC100703027,LOC102783296 coding downstream 120697 20020957 ~ 20028430 (+)
traf2b traf2 coding downstream 137604 20037864 ~ 20050223 (+)
bbln clg14h9orf16,LOC103376136,LOC106518230,LOC103028983 coding downstream 267667 20167927 ~ 20170745 (+)
G176292 mtfp1 non-coding upstream 1337 19888869 ~ 19892779 (+)
G176287 NA non-coding upstream 24569 19867818 ~ 19869547 (+)
G176286 med13l non-coding upstream 44211 19849690 ~ 19849905 (+)
G176284 NA non-coding upstream 88501 19805199 ~ 19805615 (+)
G176283 NA non-coding upstream 90520 19802546 ~ 19803596 (+)
G176346 fbxw5 non-coding downstream 155029 20055289 ~ 20061984 (+)
LOC120544937 NA non-coding downstream 168500 20068760 ~ 20069830 (+)
G176335 LOC103376127 non-coding downstream 179591 20079851 ~ 20087641 (+)
G176357 fubp3,LOC106522831 non-coding downstream 188846 20089106 ~ 20090858 (+)
G176410 NA non-coding downstream 337267 20237527 ~ 20241216 (+)
LOC120545529 ermp1,LOC102800265 other upstream 491737 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 1170331 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 1236497 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 1243047 18635026 ~ 18651069 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 1345975 18536631 ~ 18548141 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 11576 19911836 ~ 19914680 (+)
pappaa pappa other downstream 615087 20515347 ~ 20620786 (+)
G176526 NA other downstream 1046424 20946684 ~ 20947055 (+)
G176753 NA other downstream 2378620 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2596153 22496413 ~ 22524405 (+)

Expression


Co-expression Network