trim32 (trim32)


Basic Information

Item Value
gene id trim32
gene name trim32
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20696052 ~ 20701783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779630.1
GTCATTGCGTAAGTGACGTCGTCAACACTGCAGTCTCTCACTAGCAGCTGCAGTAGCAGAACCACAGCACGCCCATCAAAACCTCTGAATTTCCAGTTCCAACCAGCTAACATTGAAGAAAAGGACATAATGGAGGCAGCATCTTCTTCCCAGCTGGACCCAGATCTAATAAGGGAGGTTCTTGAATGCCCTATCTGCCTGGAGACCTACAACCAGGATCAAATGAGACCCAAACTCCTGCAGTGTGGTCACACAGTGTGCCGGCAGTGTCTAGAGAAGCTATTGGCTAATACTATAAATGGAGTGCGCTGCCCCTTCTGTAGCAAGGTGTCCCGTATGAGCAGTATCTCCCAATTGGCCGATAATCTGACTGTGCTCAAGATCCTAGATTGTACTACATCCTGCAGTGCTGCTACTGCTGCCCTAATGTGCAAGTCCTGCTGCAACCGCCTACCACGACAGTACTGCCATGATTGTGCTACAGTCCTCTGTGAGCTCTGTAAAGGGGAGGGCCACCTGCATCAAGGCCATTCTGTCCAGCCGATTAGGGTGGCTGCTGAACAGCGTCGTAAAGAACTAGGTGGCAAGCTGACTTCTCTGCGTGATGTTATGGGTGATATTCAGAAGAAAAAGACAGCTATTGAAAACATCTCTAAGTCCTTGAGACTAAAGTACCAGGCAGTGCAGCAGGACTATACTTCAGCTGAGCTACGTCTTCAAGAGGAACTCAGCAGGTCTCGAAGGACATTCACAGCTTCCATGGCAGAAGTGGAAAAGCTTAATGGGCAAGTCCTGGAGGAGCAGACGTATCTCCTCAACATTGCAGAGGTAAAAGTGGTGTCACGCTGTGATTATCTGAGAATGTTGGTGAGGCAGAGCGATATTGCTTTGCTAAAGGATGATGGCGAAGGCAATGATGACGAAGAGCTAGATTTGAGGAGCAGCTTGCCCATCATGTTTCAGCTGCAAGAGCCAGAGCTGATCAGAACAGAGCACTCTAAGCCTGTAGAAGTGGGCCAAGTGACCACAAATACTTATACTGTCAATACAGAGGATGAGGAGAGTGGTTTGGAGATAGCACTTGAGGGTTATGTAGAGAGTGAAACTGGGGCAACAGGGGCTACCGGTGGTGGAAGGGGGGCTCCAATGGATCATTACCGAGACATTGACATGGTTGCAGCTGTAGAGGATGCGGCATGTGGTTCACCAGGCAGCTTTAAGTCAAAGTCTATGGATGCAGGTGGGGGATCACCTGGTGGAGCTGGGGCAAGTGCAGGGCCGGCAGTCTGCCAGTTTGTGAAGAAGATGGGCTGCAAGGGAACGCTACCTGGCATGTTCAATTTACCAGTCAGCATCTGTGTAGCACAACAAGGTGAGGTCCTGGTGGCTGACCGTGGCAACTACCGCATCCAGATCTTTAATCGCAAAGGTTTCCAGCGTGAAATCCGCCGCAATGCCAGTAGCATCGACAACTTTGTCCTGAGCTTCCTTGGGGCTGACCTGCCTAACCTCATCCCCTTATCCATTGCTGTCACTCCTCAAGGCCTGATTGGGGTCACTGACAACTATGATAACTCGGTTAAAGTCTACACTATGGATGGACACTGTGTGGCTTGCCATAAGAACCAGCTGATTAAACCCTGGGGAATTACTGCCATGCCATCAGGTCAGTTTGTGGTGTCAGATGTGGAAGGTGGCAAGCTGTGGTGTATCGCAGTGGACCGCAATTTAGGTGTGGTCAGCTACAATCGATTGTGCTCTGCTGTGCGGCCAAAGTTTGTGACATGTGATGCGGCTGGAACAGTCTATTTCACTCAGGGCCTAGCCCTGAACTTTGAAAAACGTCACAATGAGCCCCACCTGGAAGGGGGCTTCTCTATTGGCTCAGTGGATGCAGACGGCCAGCTAGGCAAGCAGCTCAGCCATTTCTTCTCAGAGACGGAGGACTTCCGCTGTATCACTGGCATGTGTGTGGATGTCAATGGGGATTTGCTGGTAACGGACAGTGGCAGGAAAGAAATCCTCCAGTTTCCCAAAGAGGGTGGATTCAAAATTCTTATCCATGAAGGGCTAAACTGCCCTGTAGGAGTGGCCACCACCCAGAAAGGACAACTGCTTGTACTGGATTGTTGGGACCACTGTGTCAAAGTCTACACATACATTCAGAGGAGGCACTCCTCCACTTCCTAGAGGACCAATCCAGTCTTTCTGCACATGAGAGGTTTAGTAGTGTTGGTAGGTATGGAAATTTGGAAAAGGTTATCTGTCACTTTAGTTTGGCTGCACTCCAAACAAGTCTCACTCCAGCATTCATTGAGTTAATACAGTAATGTTCTAGTCAATTTGGTTTAGTTTAAAACCCActgcattttaatttaatacctgaaattaaaaatatgctacTTAAGCTGCCTTGTACCTGATTATTGGAACGGATCACAACACTGAAAACAGACCTTGCAATATTTTTACATCAAAGAATACTGGCACAAGTTTTGCATTAAAATAAGCAAAAGAAGCCATTGATGTCAAAGCTAATGCAGGCACAAAGTATAGACGATTCCCTTCCTCTGTTTTACTGCTATATCCACCATTTAGCCTCACTGTGTGCGATGCATGGCTTTCACTGATCTGGCTTTgcaaaagagaaactggatgaAGAAGAGCTGAAAATGAACATGTATTTACATATAAAATTAAGCATACCAAGGATTTTGGCCTGTGAAGCACTTTATTATTGACACAACACTGTTTCCTAGGTTTCAGTAGCACAGACTAACATTGATCTTGCTGAATGCAGCTGCCAGCTTTAAAGTTTACTGTGCAGTTAGCTAATGGCAAAACAGTAACTGAGTATCAGCATTCATTGAATTGCATTTAGTAACATTCAGGGAACATTAAGTGTAGAAACCTAAGTTACCTACAGGATAGAGGGTTGAACCAGCATGATAGGCTGTGGAGGAAAGCTGGGTAATATGGGGCAAGGGTGAAATGTCATTTACTGGGGTTCTGTGGGTTAAATGCAGTCAGAATTATGGTTACAGATGTTTAATTTGTAGACCACATTATCATTATGTCCCGGTACTTATTAATACTACCTAGCTAgcctgtgtgctgtgtattttGGAGTAGCACATCAGTCTAATGACTTTTTCAGAGCAAATATTACTCAAATCTACTGTCTGATCATCAAACCCTTTTCCCTGTATGTTATTTCCTTCATCGCTCTCCTAGTGACATCCCAGCCACAGCCTTACTTATGTCACTAGGCGGCAGGTTGAGGTAACCAGCTGTAAGATAATATTATTGTCATCTGCCCTGGACCCTATTCTAGCTGTTCTGCTCAGTCGTACATACAGTATCACTACAATTTCAGATGTTACATCTCCTTCTGCTTGccatttatttaaaagttaGCTTTGATCACAAAACACAGTAGCTCCTACTTCTCagacagaactgtgtccattaTGATTAGAGTAACATTATGATTAGGTTCCAGATGACCTTTGTAACCTGGAaggcttttaaaatgtcaaatcatCTATAAATGACTTTTTGTTACAATATCAAAATAGCCAACACTAAAAAGCTCCCAGACCACATTAAGCGTTAGGAGTACAGCATGCATCTACAACTTGAATAATGTTTACAAACTTTGTTCAAACCTGCCTTTTATTCCAAAAAACTTATTCCATGCCATTGTTTCCTCACGCCTGGCCTGCGGTTAAACAAATCTTTTTCGGGATCACTGGCAGGAGTGTTCAGAATAGCGCTGCTAGGATAATGATGAGTGAAAAACTCCAGCATCACACACCAGACCTGGCTTTGTTACACTGGGATGTTGGATCTGTGTTGCTATGTTTCTCTCAGGATTTTATTCAACACTACACAACTTGCAACCTGTGTTCTCCAGTGTTGGCAGATAGGGTAAAGACAACAGCTTTATACAGTCTTTTGCAAGTTTGTGGTAGTCAAGATTAAATTCATCTACCGTATATCTGCAtgcatttcatttattattttattatgtagATTTAGTGGACTTCATTGTCCATATTAAGCATTATAAATATAATGCTTtcaggtaaaataaaatcaaaatattTAGTGGCCTCAATTTTGGGAATTAAGTTAATCATTGAAATCCACCCATGTATGTAACATATTCTATGTCCATAAATACATAAGTAGTAAATATGCCTTCCCGCCAATACGTATCTTCCAGTCCAGATATGCTCATAAGAGCATATCACATACTGACTCAGTTTCAGCcttaaaaataaagtatttcACAAAGCTGACCTTATAAACATTATCGTAAACAATAAGTGTTTGTAGTATTTCTACATAAAGTGATAAGGAGTAGAAAACAAGTAGAACTGAATTTAAGTATCAAGTGAAGTCTGTCACAGTCATTTCCCCTgtgcatttttatttgttttattgttaggCCATGTTATATCAACACTAAACCAATAGATTATAATTCAAGATCGTCTCAGCTGCATGTCAACCTTGccataaaaacatttattcagTGCTTTCACTGTATACATGGTCACTAGAAGTAGTTATCACTAAATAATATTCACAATTTACAGTGACAGAAAAATGcataaaatgccagaaaaaaaaatcaagtgtCCTTGTGTCAGTGTGCTACACCATCTGTTTTATTCTGTTATTAGAGAGAAGTTATTTCCTTGCATACGTCTTCAAAGTGTGTTAATTTGTACCATTGGATCGAAATACTGCAATGTGTCAATGAACCAAACTCCCATGTGTTATGTCCTTTGAAGCCTGTGGATTTTACAATGTATTGAACACAGTACAGACATCTCTGTCTAGTCAAATTCATGTTTGTATTGTTGATTATCTGAGTGCAATAAACATTTATGAACAACTTAAA

Function

symbol description
trim32 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pronephric duct morphogenesis. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 11; autosomal recessive limb-girdle muscular dystrophy type 2H; and muscular dystrophy. Orthologous to human TRIM32 (tripartite motif containing 32).

NR:

description
E3 ubiquitin-protein ligase TRIM32

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10607 TRIM32, HT2A; tripartite motif-containing protein 32

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779630.1 True 4912 mRNA 0.43 2 20696052 20701783

Neighbor

gene id symbol gene type direction distance location
znf618 znf618,LOC101485385 coding upstream 198285 20458356 ~ 20497767 (+)
rgs3a rgs3,LOC102788614,LOC104953710 coding upstream 270651 20277287 ~ 20425401 (+)
hspa5 hspa5 coding upstream 429243 20262775 ~ 20266809 (+)
dnm1a dnm1 coding upstream 460045 20181745 ~ 20236007 (+)
bbln clg14h9orf16,LOC103376136,LOC106518230,LOC103028983 coding upstream 525307 20167927 ~ 20170745 (+)
lhx3 lhx3,LOC102793556 coding downstream 759343 21461126 ~ 21472938 (+)
LOC120544873 cunh9orf69,c14h9orf69,c12h9orf69,csgr02h9orf69 coding downstream 805697 21507480 ~ 21509631 (+)
LOC120545487 nacc2 coding downstream 811390 21513173 ~ 21543255 (+)
nup214 NA coding downstream 845051 21546834 ~ 21584572 (+)
LOC120545922 plpp7,LOC102795753,LOC103473848 coding downstream 899559 21601342 ~ 21610838 (+)
G176477 NA non-coding upstream 193704 20500466 ~ 20502348 (+)
LOC120545557 NA non-coding upstream 196234 20497822 ~ 20499818 (+)
LOC120545553 NA non-coding upstream 255486 20437171 ~ 20440566 (+)
G176410 NA non-coding upstream 454836 20237527 ~ 20241216 (+)
G176357 fubp3,LOC106522831 non-coding upstream 605194 20089106 ~ 20090858 (+)
G176507 NA non-coding downstream 235023 20936806 ~ 20937292 (+)
G176542 NA non-coding downstream 449484 21151267 ~ 21154855 (+)
G176559 NA non-coding downstream 695864 21397647 ~ 21399003 (+)
G176565 ak1 non-coding downstream 700131 21401914 ~ 21410459 (+)
G176644 NA non-coding downstream 953420 21655203 ~ 21655587 (+)
pappaa pappa other upstream 75266 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 781372 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 1293673 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 1972267 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 2038433 18656524 ~ 18657619 (+)
G176526 NA other downstream 244901 20946684 ~ 20947055 (+)
G176753 NA other downstream 1577097 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 1794630 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 1830125 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 2296470 22998253 ~ 23008834 (+)

Expression


Co-expression Network