thbs4b (LOC104922466,LOC103357985,LOC101475932,LOC102294017,LOC102209966)


Basic Information

Item Value
gene id thbs4b
gene name LOC104922466,LOC103357985,LOC101475932,LOC102294017,LOC102209966
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23594007 ~ 23611205 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779655.1
CTAtcttcacattcacacaccaattcagacacacacacaaacacacacacacacacacacacacacacaaacagtcagcAGCTTCTATCAAGCATCTATCATGACAGTCTTGTCTAACTTCTGATTCAAAAAAGGAGGcagggacacaaacacaccactcACAGCAGGCGCAGACATACGGGAAACTGCCACTGTGTCACATAATAAGCCACTACAGAGAAACTGCTGATCTGGGACCAGCTGGAAGGACGAAATGGGTGTTTGGGCAGCTCTGATTCTGGCCTCGCAGCTGCTATTACAACTGAGCTTACACGTGAAGGCCCAGGCTTTAGTCTATGATCTGCTCACCTCGCCTGATTGCCTGCCAGACCTGCTGCAGGGAGGTCTGGCTGAGCAAGGGGTGAACGAGGCTTTCATCCTAACCTCCTTCAAGTTGCAGCCCAACACCGGAACCAGTGTGTTTACCCTGTACAACCCCAGGGACAACAGCAAGTACTTTGAATTCACTGTGATGGGGAAGCTCAGTAGAGCTGTGTTACGCTACCTGCGGAGTGACAAGAGGATGAGCTCAGTAACCTTCAACAACCTGGTGCTGGCAGACGGCCAACAACACAGACTGTTGTTCCACCTGAAGGGGATGCAGCAGCAGGGGCCGGGCGGGGTCGAGCTGCATCTGGACTGCAGGCTGGTGGAGACGGTCCGGGATCTCCCCGCTGCCTTCCAGGGTTTGCCAGCAGGCTATGGTCTGGTGGAGCTAAAGACCATGCAAGCCAGAGAGCAGGAGAGTTTAGACGAGCTCAAGCTGGTGGTTGGGGACACATTTGAGAATGTTGCTTCATTACAAGACTGCCATCTCCAACAAAGAGACTCTGTCCAAACTCTGGGGGTCAACACGAAGCAGCTGTCCAATCAAATGCTGGAGTTAACCAAGGTGATAAATGAACTGAAAGACGTCCTCATTCAGCAGGTCAAAGAGACCTCCTTTCTAAGAAACACCATCTCAGAGTGTCAGGCCTGCGGTCTGGGTGGTACTGAGGTGGTGAAACCAAAGTGTGGCTCAGGTGTCTGTTTCCGTGACGATATGTGTATAGAGACAGCGGATGGTGTTGAGTGTGGACCTTGTCCTGATGGCTACACCGGGGATGGTTTCAACTGTGATGATGTGAATGAGTGCCAGTTTAACCCCTGTTTCCCTGGAGTGAAGTGTGTAAACACTGCACCGGGTTTCCGCTGTGACGCCTGTCCGCTGGGCTACACCGGCCTGGCAGTGGAGGGTGTGGGCATTTTGTTCGCCCAGACCAACAAACAGGTCTGCGACGATGTTGACGAATGCAAAGGACCCAACAATGGAGGCTGCACGGCAAACTCAATCTGTCACAACTCTGTGGGCTCTTACCACTGTGGCAGCTGTAAGTCAGGTTTCACAGGAGATCAGGTGAAGGGCTGTAAGCCAGAGATCAGCTGCGGCAACAGCCTGACCAACCCCTGCGATATCAATGCCCAGTGTATAGCAGAGAGGGACGGGTCAATCCATTGTCAGTGTGGAATTGGCTGGGCTGGTAACGGATACTTGTGTGGGAAGGATACCGACATTGACGGATACCCAGATGACAAACTCAAATGCAAAGATTTGAGCTGTAGAAAGGATAACTGCATCTTCGTTCCTAACTCCGGTCAAGAGGATGCCGACAGGGATGGTCATGGAGACGCCTGTGATGACGATGCAGATGGTGACGGTATACTAAACGAGCAGgaCAACTGCTGGTTGAAGGCCAACGTGGACCAGAGGAACAGTGATAAGGACAGCCACGGTGACGCCTGTGATAACTGTCGCATTGTGGAGAACCCTGACCAGAGGGACACCGACAGCGACGGCAAAGGGGACGCCTGTGATGATGACATGGATGGAGACGGCCTGAAGAACTTTCTGGACAACTGCCAGCGTGTCCAAAACAGAGACCAGCTGGACCGGGACGGAGACGGAGTGGGAGACGCCTGCGACAGCTGCCCCGACATCCCCAACCCAAACCAGTCTGATATTGACAATGACCTGGTTGGAGACTCCTGTGACACAAATCAAGACAGTGATGGCGATGGTCACCAGGATACCAAGGATAATTGCCCGTTCGTGATAAATAGCTCCCAGCTGGACACGGACAAAGACGGGTTGGGTGACGAGTGTGACGATGACGACGACAACGATGGGATCCCTGACACCATACCACCGGGACCAGACAACTGTCGGCTGGTACCAAACCCTGACCAGATTGATGACAATAACGATGGAGTTGGAGACGTGTGTGAGTCTGACTTTGACCAGGACAAAGTGATTGACAGGATTGACAACTGTCCTGAGAATGCTGAGGTTACCTTGACTGACTTCAGGGCCTATCAGACGGTGGTGCTGGACCCTGAGGGCGATGCCCAGATTGACCCCAACTGGGTTGTTTTGAACCAGGGAATGGAAATTGTTCAGACCATGAATAGTGACCCAGGACTTGCTGTTGGTTACACTGCTTTCAGTGGAGTGGACTTTGAGGGCACATTTCACGTGAATACAGTGACTGACGATGACTACGCTGGCTTCATCTTTGGCTACCAGGATTCGTCCTCCTTCTACGTGGTGATGTGGAAGCAGACGGAGCAGACCTACTGGCAGGCAACACCCTTCAGAGCTGTGGCCGAGCCCGGCATCCAGCTTAAGGCTGTGAAGTCTAGAACGGGCCCCGGGGAGCACTTGAGAAACTCACTGTGGCACACGGGAGACACCAACGACCAGGTGCGTCTGCTGTGGAAGGACCCGAGAAATGTAGGCTGGAAGGACAAGGTGTCCTACCGTTGGTACCTGCAGCACCGTCCACAAGTTGGATACATCAGGGCGCGGTTTTATGAAGGAACTGAGCTGGTGGCAGACTCTGGTGTAACTATTGACACCACAATGAGAGGAGGACGACTCGGTGTGTTCTGTTTCTCTCAAGAAAACATCATCTGGTCCAATTTGAAATACCGCTGCAATGACACCATCCCAGAGGATTTCCAGGAGTTCAGCACTCAGCACGGTGTTGACTCACTCTAAAGTCAAGACAAAAATATGATACCAGATCTCTAAAGACtgcttttgtgtgtgaatgtgtgagtatgtgagtatgtgtttgtgcgtgtgtgtgtgtgtgtgtgtttatctgtgtattGATGTGTACAGTTTCAGTGCATATGTGACCACAATCTcgtactgtatgtgcatattATCACGTCCGTTTTCTTTTCCCAATCATGTCTTCCTATTTAATCATCTCTTAAAGACTCCAGCTGAGCTTGTTATGCTGAATATTGTAAGTTATGATGATTTCACTGAACATGATCCAACTTGACATGACATAAGAATAAAGAACCATGGAATAATGGACATTTTCCTATATATCTTCAAAATAAAGGGCACATCATCATAAAAATAGTATTTTGCTCCCAAACAGAGGATTTTAGCTTATGTGTAGCATTATAAACATATTCAAACAGCTACAATGAAAGTTATCGCTCTGGATCAACCTCATACTGACGTTCATTATGATCACAAACTGGTTGTATTTGTTTAACTATCAGCGTGGTATTTTTACTCCTTTTGTGAAGAGGAGACCAAGTTTTGTACAACTAAAATTTCAGACTGTGCCTAGTCTCACGTACTGTAGAAGATTAACTTAAAGCTCGTTGTCACCATGTTTTCTCTTTCCATCATTTGGTCTTTAAATTCTTGATCATGTTATAGTCAAGAACCAGGTCAAAATAAAGGGCTTTAAAGTATA

Function

NR:

description
PREDICTED: thrombospondin-4-B-like

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779655.1 True 3800 mRNA 0.49 22 23594007 23611205

Neighbor

gene id symbol gene type direction distance location
zgc:73226 LOC102294317,LOC100705876,LOC101475642,LOC108230926,LOC103357984 coding upstream 10419 23577569 ~ 23583588 (+)
LOC120545381 LOC103364544,LOC103364545,LOC100697171,LOC104922463 coding upstream 101510 23472254 ~ 23492497 (+)
LOC120545384 LOC104922461,LOC103364542 coding upstream 123500 23458760 ~ 23470507 (+)
kcmf1 kcmf1 coding upstream 176797 23407372 ~ 23417210 (+)
itga1 itga1 coding upstream 187698 23356223 ~ 23406309 (+)
LOC120545389 LOC103357986 coding downstream 532 23611737 ~ 23619177 (+)
zgc:122979 LOC103357987 coding downstream 12905 23624110 ~ 23628080 (+)
hwa NA coding downstream 17139 23628344 ~ 23631172 (+)
c17h18orf25 clg7h18orf25,LOC102291905,LOC103357989,LOC101477080 coding downstream 27010 23638215 ~ 23646219 (+)
rnf165a rnf165,LOC103473450,LOC102207811,LOC100695851 coding downstream 40518 23651723 ~ 23662205 (+)
G177244 NA non-coding upstream 57609 23535883 ~ 23536398 (+)
G177177 NA non-coding upstream 167105 23424844 ~ 23426902 (+)
LOC120545237 NA non-coding upstream 246614 23336307 ~ 23347393 (+)
G177170 golph3,LOC103364537,LOC106962713 non-coding upstream 258430 23331898 ~ 23335577 (+)
G177169 NA non-coding upstream 262759 23330150 ~ 23331248 (+)
G177284 NA non-coding downstream 62057 23673262 ~ 23719373 (+)
LOC120545825 NA non-coding downstream 323642 23934847 ~ 23935801 (+)
LOC120545826 NA non-coding downstream 324796 23936001 ~ 23936681 (+)
LOC120545017 NA non-coding downstream 358052 23969257 ~ 23971641 (+)
G177452 NA non-coding downstream 528213 24139418 ~ 24150168 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other upstream 135402 23440983 ~ 23458605 (+)
G177094 NA other upstream 409745 23182673 ~ 23184262 (+)
klhl8 klhl8 other upstream 585173 22998253 ~ 23008834 (+)
G176870 cplx4 other upstream 1056670 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 1069602 22496413 ~ 22524405 (+)
rpl37 rpl37 other downstream 112273 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 112961 23724166 ~ 23724245 (+)
LOC120546141 NA other downstream 114769 23725974 ~ 23726052 (+)
dnlz dnlz,LOC104941974 other downstream 544180 24155385 ~ 24157621 (+)
G177596 map1b other downstream 1091766 24702971 ~ 24711641 (+)

Expression


Co-expression Network