traf2b (traf2)


Basic Information

Item Value
gene id traf2b
gene name traf2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20037864 ~ 20050223 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779815.1
GTTCTCGCCAGCTGCTTTATCTATAAAAGTAAGCGGCGCATGTCGCAGTAAATTGTAAACATAGCTAGCTAAAGGTTGAGCTGTCCTTATGCGATAGCGGACAaagttttgttttctgtctgtcgACAGAGGCAAAGTGAAGACGTCAAGGCTATAGCGCCAGATTGATGGAGAAGAATGGCCCGAATCTCGTTGGACTGCACCAACTCTTTACCAGGGATCCCCCTCAGTGTGCTGTCAGTGCCTATGGAGAATAAGTACAAATGTCAGCAGTGTCTCCAGGTCCTGAGGAAGCCTGTCCAGGCTCAGTGCGGCCACCGCTTCTGTGTACACTGCTTCAAGCAGCTCACCAGTTCTGGGCCAAAGCCTTGCGAAGCCTGCCGCCAAGAGGAGATATATGAGGAACCTATTTCCATCCTAAATAGTAATGAGGCATTTCCAGACAATGCAGCCGGCCGAGAAATAGCAAGTCTGCCTGCCAGGTGTTTGAACCAGGGCTGTGATTGGACAGGCTCAATAAAAGAGTATGAGGCTCAACATGAAGGTCGTTGTGAATTTGAGCGGATACAGTGTGAGGCCTGCCAAATCTCAATCCTTCGTACAGACAAGGACAGACATAATGAGAGAGAATGTGAAGCACGAACGCTCAACTGCAAATACTGCAAAATGACCTTCAACTTTAAAGACATCAAGGCCCATGATGAGATCTGTCTGAAGTTCCCCTTACAATGCAAGGACTGTGGCAAGAAAAAAATCCCAAGAGAAAAGTTCAATGACCACAGCAAATCCTGCGCCAAGTCAAAGAGTGCCTGTCCATTCAGTGATGTGGGCTGTAAATCTGTGATAGATAATGGGAAGCTCGCTGACCATGAGCACAGCAGCACCATGGAGCACTTGCGTCTGCTGCTGCCCATGGTGCTGTCCATGGCTAGGACGCGTGCCGATGCTGCTGCTCACGGAGAGTGGCAGGAGGACTCTGGCCTGGGCCTGTACAGGGCTCCTGAGGAGGGGGTCACTATGGGCTCTGGAGCTGCAGCCTCCATGCAGTCTGTGGACGTGGACAAAAAGGTGAACGCTTTAGAAAACATTGTGTGTGTCCTAAACCGAGAGGTGGAGCGCAGTTCGGTTACATTGGAGGCTTTCTCACATCAGCATCGTTTAGACCAGGAAAAAATTGAAAACCTCTCCAACAAAGTGCGTCAGCTAGAGCGGACAGTCACCATGAGAGACTTGCAGCTGTCTGAAACTGAACAGCTGTTGCGAGAGCTCCAGTTCTGCACCTACGACGGGATATTTGTGTGGAAAATCTCTGACTTCTCACGCCGCAGACAGGATGCCGTGGCCGGTCGAACACCTGCAATGTTCTCACCAGCATTTTACTCCAGCAAATATGGCTACAAAATGTGTCTGAGGCTTTATTTGAACGGCGACGGGACGGGCAGAGGAACGCACCTTTCGCTGTTCTTTGTCGTCATGAGGGGAAAGTGCGACGCTCTGCTCAAATGGCCATTCAGTCAGAAGGTGACTCTAATGCTCTTGGATCAGAACAACAGGGAGCACATCATCGATGCTTTCCGCCCCGATGTCACCTCCACCTCCTTTCAGCGGCCGATCAGTGAGATGAACATCGCCAGTGGCTGCCCGCTCTTCTGTCCGCTGGCTAAACTGGCTGGCAAGAGCCCCTATCTGAGAGATGATACCATTTTCATCAAAGCCATCGTAGACCTCACAGGCTTGTAA
>XM_039779816.1
ACGCACGAGAGTGGCGTTCAGCAGTGACGTGGATTAGGGTGTaactaacttagctagctaaatacTTGGTGTTGTGTCGGTTGCGTTTATAAGGTGAACAAGCAGACTCTGGGCTATAGCGCCAGATTGATGGAGAAGAATGGCCCGAATCTCGTTGGACTGCACCAACTCTTTACCAGGGATCCCCCTCAGTGTGCTGTCAGTGCCTATGGAGAATAAGTACAAATGTCAGCAGTGTCTCCAGGTCCTGAGGAAGCCTGTCCAGGCTCAGTGCGGCCACCGCTTCTGTGTACACTGCTTCAAGCAGCTCACCAGTTCTGGGCCAAAGCCTTGCGAAGCCTGCCGCCAAGAGGAGATATATGAGGAACCTATTTCCATCCTAAATAGTAATGAGGCATTTCCAGACAATGCAGCCGGCCGAGAAATAGCAAGTCTGCCTGCCAGGTGTTTGAACCAGGGCTGTGATTGGACAGGCTCAATAAAAGAGTATGAGGCTCAACATGAAGGTCGTTGTGAATTTGAGCGGATACAGTGTGAGGCCTGCCAAATCTCAATCCTTCGTACAGACAAGGACAGACATAATGAGAGAGAATGTGAAGCACGAACGCTCAACTGCAAATACTGCAAAATGACCTTCAACTTTAAAGACATCAAGGCCCATGATGAGATCTGTCTGAAGTTCCCCTTACAATGCAAGGACTGTGGCAAGAAAAAAATCCCAAGAGAAAAGTTCAATGACCACAGCAAATCCTGCGCCAAGTCAAAGAGTGCCTGTCCATTCAGTGATGTGGGCTGTAAATCTGTGATAGATAATGGGAAGCTCGCTGACCATGAGCACAGCAGCACCATGGAGCACTTGCGTCTGCTGCTGCCCATGGTGCTGTCCATGGCTAGGACGCGTGCCGATGCTGCTGCTCACGGAGAGTGGCAGGAGGACTCTGGCCTGGGCCTGTACAGGGCTCCTGAGGAGGGGGTCACTATGGGCTCTGGAGCTGCAGCCTCCATGCAGTCTGTGGACGTGGACAAAAAGGTGAACGCTTTAGAAAACATTGTGTGTGTCCTAAACCGAGAGGTGGAGCGCAGTTCGGTTACATTGGAGGCTTTCTCACATCAGCATCGTTTAGACCAGGAAAAAATTGAAAACCTCTCCAACAAAGTGCGTCAGCTAGAGCGGACAGTCACCATGAGAGACTTGCAGCTGTCTGAAACTGAACAGCTGTTGCGAGAGCTCCAGTTCTGCACCTACGACGGGATATTTGTGTGGAAAATCTCTGACTTCTCACGCCGCAGACAGGATGCCGTGGCCGGTCGAACACCTGCAATGTTCTCACCAGCATTTTACTCCAGCAAATATGGCTACAAAATGTGTCTGAGGCTTTATTTGAACGGCGACGGGACGGGCAGAGGAACGCACCTTTCGCTGTTCTTTGTCGTCATGAGGGGAAAGTGCGACGCTCTGCTCAAATGGCCATTCAGTCAGAAGGTGACTCTAATGCTCTTGGATCAGAACAACAGGGAGCACATCATCGATGCTTTCCGCCCCGATGTCACCTCCACCTCCTTTCAGCGGCCGATCAGTGAGATGAACATCGCCAGTGGCTGCCCGCTCTTCTGTCCGCTGGCTAAACTGGCTGGCAAGAGCCCCTATCTGAGAGATGATACCATTTTCATCAAAGCCATCGTAGACCTCACAGGCTTGTAA
>XM_039779817.1
ATGGCCCGAATCTCGTTGGACTGCACCAACTCTTTACCAGGGATCCCCCTCAGTGTGCTGTCAGTGCCTATGGAGAATAAGTACAAATGTCAGCAGTGTCTCCAGGTCCTGAGGAAGCCTGTCCAGGCTCAGTGCGGCCACCGCTTCTGTGTACACTGCTTCAAGCAGCTCACCAGTTCTGGGCCAAAGCCTTGCGAAGCCTGCCGCCAAGAGGAGATATATGAGGAACCTATTTCCATCCTAAATAGTAATGAGGCATTTCCAGACAATGCAGCCGGCCGAGAAATAGCAAGTCTGCCTGCCAGGTGTTTGAACCAGGGCTGTGATTGGACAGGCTCAATAAAAGAGTATGAGGCTCAACATGAAGGTCGTTGTGAATTTGAGCGGATACAGTGTGAGGCCTGCCAAATCTCAATCCTTCGTACAGACAAGGACAGACATAATGAGAGAGAATGTGAAGCACGAACGCTCAACTGCAAATACTGCAAAATGACCTTCAACTTTAAAGACATCAAGGCCCATGATGAGATCTGTCTGAAGTTCCCCTTACAATGCAAGGACTGTGGCAAGAAAAAAATCCCAAGAGAAAAGTTCAATGACCACAGCAAATCCTGCGCCAAGTCAAAGAGTGCCTGTCCATTCAGTGATGTGGGCTGTAAATCTGTGATAGATAATGGGAAGCTCGCTGACCATGAGCACAGCAGCACCATGGAGCACTTGCGTCTGCTGCTGCCCATGGTGCTGTCCATGGCTAGGACGCGTGCCGATGCTGCTGCTCACGGAGAGTGGCAGGAGGACTCTGGCCTGGGCCTGTACAGGGCTCCTGAGGAGGGGGTCACTATGGGCTCTGGAGCTGCAGCCTCCATGCAGTCTGTGGACGTGGACAAAAAGGTGAACGCTTTAGAAAACATTGTGTGTGTCCTAAACCGAGAGGTGGAGCGCAGTTCGGTTACATTGGAGGCTTTCTCACATCAGCATCGTTTAGACCAGGAAAAAATTGAAAACCTCTCCAACAAAGTGCGTCAGCTAGAGCGGACAGTCACCATGAGAGACTTGCAGCTGTCTGAAACTGAACAGCTGTTGCGAGAGCTCCAGTTCTGCACCTACGACGGGATATTTGTGTGGAAAATCTCTGACTTCTCACGCCGCAGACAGGATGCCGTGGCCGGTCGAACACCTGCAATGTTCTCACCAGCATTTTACTCCAGCAAATATGGCTACAAAATGTGTCTGAGGCTTTATTTGAACGGCGACGGGACGGGCAGAGGAACGCACCTTTCGCTGTTCTTTGTCGTCATGAGGGGAAAGTGCGACGCTCTGCTCAAATGGCCATTCAGTCAGAAGGTGACTCTAATGCTCTTGGATCAGAACAACAGGGAGCACATCATCGATGCTTTCCGCCCCGATGTCACCTCCACCTCCTTTCAGCGGCCGATCAGTGAGATGAACATCGCCAGTGGCTGCCCGCTCTTCTGTCCGCTGGCTAAACTGGCTGGCAAGAGCCCCTATCTGAGAGATGATACCATTTTCATCAAAGCCATCGTAGACCTCACAGGCTTGTAACTGGGGAAGCTGTGGAAGCTACACCAAAGCAtttctaaaaacaaacaaataattattcataataataataataataataataatatatctatATGATATTATGGTAATATCTATGATAATATATGATATACTATGTGGCTATGATATTACACAATATCATATCTACACTATACATGTAATAATGTGTCACGTTATGACGGATGTACAAGGGTGTGTAAAATAACAATCATGGTAGTGGATCTGTAATGGTTATAGGCATCTATCTTTAGTGAAGCAATTACACTGATTTACCTGTGCTTTATAGAAGTTAATAATCAATTATTGTTAATGTCTTGTATAGTTAAGACTTTTGGCAGTACTTAGATCACATAAAAAGTTAGTATTTCAGTATGAAGCTGTAAGCAGGCGTTAAAACAGAGTTTTGAATTTAGTAAAATTAAGAGCAGCTGAGTTCAAAATCTCCTTGATGACAAACGGGTCTGTAATCAGCtgtctttttttgggggcatttcagcctttaatggaaagaacagctagacatgaaaggggggagagagagagggcaatgacatgcaggaaaatcatcacaggttgtactcaaaccctggaccttctgcgtcgaggcatacacCTCCTAAATATGttcgcctgctctaccaactgagctaacccggccacaatcAGCTGTCATCTTAATGTGACCCTGTCAGCTTATAACTAACCCTAAAGGCTTATAACTATTTGTATCAAATACCTTGTTTatagtaattatattttatattaattagAATACACCTAAGTTactattttatgacattttatagaccaataATCAattatacaataaaataatcatCATATTAATCAATATAGCTCTGCTAGAGAAAATGAATCCACTTTTAAACCATATAACCATATAAGCCATTTGATTCATTTTGGTGATCTAGCAAGCAGCATAAACTGCATAAACACAGCTAAGATTAAGGTTATAGTATAGAATGAGGTTTTTGAACTATGATATATCTACACGAATCATTGATTTATGTCATCAAGTGAGGGTCAGCATCACAAATGGGCTTGGGTGAAAAATATCCAGAGAACCAGATtacccttatactgtatctgatgatTTCCTGAATATGAAACTCTCATCTTACATGTGAATGTGACAGCTTTCCCCTGTGGGCCACCAAAAGGCTCTATGATACTTTCCAATGCGTTCCGCTGGTGTGATGTCTCACAACCCACTTCATGGACCGCTTTCAGTAACTGAAAATATACCTGTTGCAAAACCACAAGCTACTGTGTCACACTGGCTGTTTGTTGTTGGTGTATTTTGTTTGCTCCTGTTATGCTGTTGTCATGAATGTGGACATGATGTACTGTTCAACATGCCccaaaacattatttataaaaatctaTAAAGGGGAATTTCTCTGTGAAAACAGCTGTGTAAGGTTTTCTGTGCTTCAGGAGGGAGTTTTGTAAGTTCTGATCAAAACACAGTCTCTTGTGTCATGGAGACAGCGGTGGGCTCAGGCTGTCTGAGGGCCAggggtgaaaaaaaataaaaagggcaCCAGCTGCATGCTGTGGGGCACCAGCATGCAGAAAGTTTTCTAGCATGAGGGTAGCCTATATGGCATTGCATCACATTTTGTCCATTTGAAGGCACCCATTTTCTCTACTAAAAGGGCACTTTATCATGTTTTATCTACCGAAGAGGTCACCAGTGCTTGGAGACTACAAATCAGAACAAAGTCTGTTACAAACTGGGGCGTGGAGTTGCCAGACAGGGAGAGTCTAATGAAAAGACTCTATTggttgcatcatgggaaatataggatccagtgttttgcGATTTTTTTACTCATACTAGGGATGATAATTCAGGATGTTTCGGGCCTCTGTTGTAGCAATTTTTaccattacttttttaaatctgtctctTGCAAGTCCTCCAACTTTatggaaataaaatacaaaattgcTGTA

Function

symbol description
traf2 Enables several functions, including enzyme binding activity; tumor necrosis factor binding activity; and tumor necrosis factor receptor binding activity. Involved in several processes, including positive regulation of NF-kappaB transcription factor activity; positive regulation of macromolecule metabolic process; and protein ubiquitination. Located in cytosol. Part of several cellular components, including IRE1-TRAF2-ASK1 complex; TRAF2-GSTP1 complex; and tumor necrosis factor receptor superfamily complex.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K03173 TRAF2; TNF receptor-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779815.1 False 1740 mRNA 0.51 11 20037864 20048228
XM_039779816.1 False 1702 mRNA 0.51 11 20038258 20048228
XM_039779817.1 True 3558 mRNA 0.43 10 20041803 20050223

Neighbor

gene id symbol gene type direction distance location
bspry bspry,LOC100703027,LOC102783296 coding upstream 9434 20020957 ~ 20028430 (+)
LOC120545547 LOC103368295 coding upstream 67752 19963771 ~ 19970112 (+)
pax8 pax8,LOC102780591 coding upstream 94021 19929571 ~ 19943843 (+)
lman2la lman2l,LOC108231067 coding upstream 137604 19894116 ~ 19900260 (+)
ddx54 NA coding upstream 512540 19516810 ~ 19525324 (+)
bbln clg14h9orf16,LOC103376136,LOC106518230,LOC103028983 coding downstream 117704 20167927 ~ 20170745 (+)
dnm1a dnm1 coding downstream 131522 20181745 ~ 20236007 (+)
hspa5 hspa5 coding downstream 212552 20262775 ~ 20266809 (+)
rgs3a rgs3,LOC102788614,LOC104953710 coding downstream 227064 20277287 ~ 20425401 (+)
znf618 znf618,LOC101485385 coding downstream 408133 20458356 ~ 20497767 (+)
G176289 NA non-coding upstream 131741 19883987 ~ 19906123 (+)
G176292 mtfp1 non-coding upstream 145085 19888869 ~ 19892779 (+)
G176287 NA non-coding upstream 168317 19867818 ~ 19869547 (+)
G176286 med13l non-coding upstream 187959 19849690 ~ 19849905 (+)
G176284 NA non-coding upstream 232249 19805199 ~ 19805615 (+)
G176346 fbxw5 non-coding downstream 5066 20055289 ~ 20061984 (+)
LOC120544937 NA non-coding downstream 18537 20068760 ~ 20069830 (+)
G176335 LOC103376127 non-coding downstream 29628 20079851 ~ 20087641 (+)
G176357 fubp3,LOC106522831 non-coding downstream 38883 20089106 ~ 20090858 (+)
G176410 NA non-coding downstream 187304 20237527 ~ 20241216 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 123184 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 635485 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 1314079 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 1380245 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 1386795 18635026 ~ 18651069 (+)
pappaa pappa other downstream 465124 20515347 ~ 20620786 (+)
G176526 NA other downstream 896461 20946684 ~ 20947055 (+)
G176753 NA other downstream 2228657 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2446190 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 2481685 22531908 ~ 22537337 (+)

Expression


Co-expression Network