amacr (amacr)


Basic Information

Item Value
gene id amacr
gene name amacr
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23155838 ~ 23165201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779840.1
ATAAAATGAGGAACAGGGAATACTGCGGTGTCCGCCGGTTGACCTGTTTAACATGCAGCCGTTTCTAAACTGTGTAGCTAAACATTCTGAAGCTGCTgctttatcaatattaatatgtTTTATTAAGATATTTTTAACGGTTAACGTTACCGCTGGTTGTGTAGCACGTGATCCGCCGTCGGGTAACGTTATCTCAAACCGTAGCTAATTTATGACCTCAAACACTTCCAATGGCTAACTTTCCTCTAACGTTACTCACACCGATCTAGGGCGCCCCAGCGTGTGTAACGTTAAGAGTGTAGCAATACAATACAAGCCTTCAGCAGTCACTTGTTCCCGACTTGGAAGCAAAGTATTCTACCTTCTAGTCATTTCATCATGGCACTGGCTGGAGTGCGAGTTATTGAGCTGGCAGGCCTGGCTCCAGCACCATTCTGTGGCATGATCCTGGCGGACTTTGGAGCCAAGGTGATCCGCGTGGACCGGAATAAAGTCGGCATGTCTTTGGACACACAAGCACGGGGCAAACGGTCTGTGGCCATCAACCTGAAGGCGGCAGAGGGTGTAGCCCTGCTCAGGAAACTTTGTGTCCAGTCTGATGTGGTCCTGGAGCCCTACCGTAAAGGTGTGATGGAGAAGCTGGGCCTCGGGCCACAGGAGATGTTAAAGGAAAACCCTCGTCTGATCTACGCTCGGTTGACAGGGTACGGCCAGAGTGGATCTTATGCCACCGCAGCTGGGCATGACATCAACTACCTCGCCATGTCCGGCCTCTTATCCCGGCTGGGTCGTAGTGGGGAGAAGCCCTACGCTCCGTTGAATCTGATGGCAGACTTTGCAGGTGGTGGTCTTACCTGTGCTCTTGGGATAGTCCTAGCTCTGCTGGAGAGAACAACGTCGGGGAAAGGACAGATCATTGACGCCAGCATGGTAGAAGGAGCCGCATATGTAGGTTCTTTTGCATGGAAATCTCGTAGCATCGGTATGTGGGACTGTCCAAGAGGACAAAACATGTTGGACAGTGGCGCGCCTTTCTACGATACCTACGAGACTGCAGATGGAAAGTACATGGCCGTGGGAGCCATAGAACCGCAGTTCTACAGACAGCTACTTACAGgCTTAGAGTTGGATGCTGGAGAGTTGCCTCCTCAGATGAGCTTCACTGATTGGCCAGAGCTGAGACGAATCTTCACAGAGCGTTTTGCTTCAAAAACTCAGGCGGATTGGTCAAGGATTTTTGATGGGACTGATGCCTGTGTTACACCTGTGTTGTCTTTCGACCAGGTGAGCTCACACCCACATAACCAGGAAAGAGCTTCATTCATAAAGGACTCCAGCGGGGAAGAAAGCCCCCGGCCGGCCCCGGTTCTCTCTCGGACTCCTGCGGAGCCTTGCCTTGCCTCAGACCCTGTTATTGGAGAACACACCGTAGAGGTCCTCACGGAGTATGGGTTTACGTCAGCAGACATAGACCAAATGCTTACAGCAGGGGTTGTAGAGTGTAATGCTGTCAAATCAAAGTTGTAGAGATATAATTGATATCAGTGATTGATTTTGAGAAACAAAAAGCACAATTGAGTGATTTTTAGTCAGACCTGCCATTCAAATCATGTATACCACAACtatataagttttttttttattttaacaaggAAGTCACATTGAGATTAAAACCTCTTTTGCAAGTGAGACCTAGCCAAGACAGGGTCACAAAGCAGCATCCAAcactaggggtgtcacgattcagATTCTAAATTGAAAATCCATCGAAATGAGCTTTCAATTTCAAACATTAAAATCGAAAGCAGGATCAACGATT

Function

symbol description
amacr Predicted to enable CoA-transferase activity. Human ortholog(s) of this gene implicated in alpha-methylacyl-CoA racemase deficiency; congenital bile acid synthesis defect 4; and urinary bladder cancer. Orthologous to human AMACR (alpha-methylacyl-CoA racemase).

NR:

description
alpha-methylacyl-CoA racemase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01796 E5.1.99.4, AMACR, mcr; alpha-methylacyl-CoA racemase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779840.1 True 1819 mRNA 0.48 6 23155838 23165201

Neighbor

gene id symbol gene type direction distance location
LOC120545462 ppef2,LOC103366113 coding upstream 67428 23074570 ~ 23088410 (+)
LOC120544950 LOC103473489,LOC103142714,LOC106917991,LOC106959058,LOC108231074 coding upstream 119742 23015127 ~ 23036096 (+)
sdad1 sdad1 coding upstream 158997 22990154 ~ 22996841 (+)
LOC120545187 NA coding upstream 166522 22985204 ~ 22989316 (+)
ptpn13 ptpn13 coding upstream 170918 22936704 ~ 22984920 (+)
slc45a2 slc45a2 coding downstream 4286 23169487 ~ 23202930 (+)
nxnl2 nxnl2 coding downstream 58486 23223687 ~ 23226613 (+)
csgalnact1a LOC102302787 coding downstream 64636 23229837 ~ 23259542 (+)
plpp1a plpp1,LOC102797153 coding downstream 98271 23263472 ~ 23277088 (+)
dhx29 LOC103364531 coding downstream 136388 23301589 ~ 23312531 (+)
G177079 NA non-coding upstream 13903 23141729 ~ 23141935 (+)
G177043 NA non-coding upstream 20951 23134649 ~ 23134887 (+)
G177039 scarb2,LOC104955650,LOC107395254 non-coding upstream 39122 23104642 ~ 23116716 (+)
G176974 NA non-coding upstream 222193 22893156 ~ 22933645 (+)
G176908 NA non-coding upstream 408512 22747108 ~ 22747326 (+)
G177089 NA non-coding downstream 1358 23166559 ~ 23171678 (+)
G177091 NA non-coding downstream 7051 23172252 ~ 23177502 (+)
G177093 NA non-coding downstream 15499 23180700 ~ 23181267 (+)
G177169 NA non-coding downstream 164949 23330150 ~ 23331248 (+)
G177170 golph3,LOC103364537,LOC106962713 non-coding downstream 166697 23331898 ~ 23335577 (+)
klhl8 klhl8 other upstream 147004 22998253 ~ 23008834 (+)
G176870 cplx4 other upstream 618501 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 631433 22496413 ~ 22524405 (+)
G176753 NA other upstream 873675 22278880 ~ 22282163 (+)
G176526 NA other upstream 2208783 20946684 ~ 20947055 (+)
G177094 NA other downstream 17472 23182673 ~ 23184262 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 275782 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 558277 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 558965 23724166 ~ 23724245 (+)
LOC120546141 NA other downstream 560773 23725974 ~ 23726052 (+)

Expression


Co-expression Network