slc45a2 (slc45a2)


Basic Information

Item Value
gene id slc45a2
gene name slc45a2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23169487 ~ 23202930 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779841.1
gaatacaaggccaaggcgaccagggacaggaggaggtgggagaAGACCACACCggtgaagatatggagggagagcatcaccgagaggaggaaggagaaagcgagagacaagAGAACGTGCAGGGCTCAGACAGTGAAAGGGAAAGCAGAGTGCCTGGGCCATCACCAACCATCTCCAGTCAAGCTGGTCCACACGACCAGGAGGCTCTTGGACTCATTGCTCAACTATGCAGTAGAGAGGAGGATTAGCTCAAGCTGAGCACCGAAGCAAGGATTTGGCGTTTGGCCATTTATCCATCACCTGGCGGACTGAGAGAGACACGACCATACTCTTTGTCTCTTTTCACCTAAATCTCCACTTCACTCCCTTGTtattctccctctccttctccctttCTCCTTCTACCCCATCTTTCCACTCTCCCTCTCAACCATGACCCTTCTATCAGAGGACCAGTCAGCGAGGCCCCAACCCTGCCGGCTCCCAGAGCCTGGCAAACACATCAGCACTTCTTTGTACCCAACAGACTGCATTGGCTCCAAAGAGTACTACATGGAAagtgaggagtgtgtgttcGGAGCCGTAGAGCCCCCAAGGCGCTCAAGGGGTCGCCTCATCCTCCACAGCATGGTCATGTTTGGAAGGGAATTCTGCTACGCTGTGGAGGCAGCATTCGTTACACCGGTACTTCTCAGCGTGGGCCTACCCCGCAGCCTGTACAGCTTGGTGTGGCTGATCAGTCCCATTCTGGGCTTCCTGCTCCAGCCCATCATCGGCTCGGCCAGCGACTACTGCCGCTCGCCGTGGGGCCGGCGGAGGCCTTACATCCTGGTCCTGGGCATCCTCATGCTGATTGGAATCACCCTGTTCCTGAACGGGGATGCTGTCGTCTCAGCAATAGTCAGCAACAGGTCATTGAAGAGTACATGGGCCATAGTGGTGGTGATGTTCGGAGTCGTGCTGTTTGACTTTGCTGCAGACTTCATCGACGGGCCCATCAAGGCCTACCTGTTTGATGTGTGTTCACATCGAGACAAGGAAAGAGGTCTGCACTACCATGCTCTACTCACAGGTCTGGGCGGAGCGTGTGGCTACCTGGTAGGGGCTATGGACTGGGGTCACTCTATACTGGGCCAGCTGCTGGGCTCTGAATACCAAGTCATCTACTTCTTCTCAGCATTGACCTGGAGCATCTTCCTCACCGTGCACCTCTTCAGTATACCAGAGCAACCTCTGAGCAAGGACCCACATGCCTCCGATCCCTTACCTCCCAGTGTCCTCCGCCTACTGGGCTCCCACAGCAATGGTTACGGAGCTCTGGCTAAAGAGCCCGTCTCAAATGTAGGTCCTGCATCCATCCCAGACCCCAGGCCTAGGTCTTTCTCCGCTCTGGGGGAGGCCAACTCAGTGACCTCCAGTGCCAAGCAGCCGAACAAGGAGgccCAGAAGAGGATGACGTTCAGGTCGATGATGAAAGCTATCATCAACATGCCAAACCACTACCGCTACCTGTGTGTCAGTCACCTGCTGGGATGGACGGCTTTCCTCTGCAACATGCTCTTCTTCACAGATTTTATGGGACAGATTGTGTACAATGGAAATCCTTATGCAGAACATAACTCCACAGCCTACGCCACATATGAGAGAGGAGTAGAAGTGGGCTGCTGGGGACTGTGTATTAATGCTGCGTCCTCTGCTCTATACTCTTatGTGCAGCGTTTTCTCCTCCCATACATCGGCCTGAAGGGATTATACTTTGTGGGCTACTTTGTATTCGGCATGGGTACCAGCCTGATTGGCCTCTTCCCCAACATCATCGCCACGCTCATCCTCTGCACCGTGTTCGGCGTCATGTCCAGCACGCTCTACACCATCCCATATAACCTGATAGCGGAGTatcagctggaggaggaggaaCTACTGAAGCTGCGAGGAAGCATTGGAAGTCAGCGAGGCTGTGGGGTGGACTGTGCAGCCCTCACCTGCATGGTCCAGCTGGCTCAGATCATTGTGGGCCTGGGTCTCGGCACTCTGGTCTACATGGCGGGTAGTGTAATAGTGGTGGTCATCTCGGCCTCGACCATGTCTCTGTTCGGCTGCATCTTCATTACCCTCTTTATCAGAAATGTGGACTAATTCTGATTATATATGTGTTTGAATGtactttttaataaatacaGATTCTTTATTATATCATTA
>XM_039779842.1
gcttttaatttctgcttttgtcacaaaataataaaaatcacctGAGTCTGATTTTAGACTAGGGGACCCAATCTTTGCtagttctttattttctctgggaTCGTGCCGCCCGCTGTCAAGCGGGTGGGGTTTCCTCCCTTACGGGGGTTAgtgactcctctttaaccgcccTTGGAGAGTTGCCTCCCGGCGGGGATCGACTTGGACAtgcagacctcctgttatctcctagtgggagtgcATTTCCCTATCCGCGCGGCCTGGTCAGAGCCTCTGAGCATCCCCCTCTCTCAGTCGGGCGACCAAGAAGGGCAAGGCGGGCGTCCTTGAGAAGGAAGGGACCTCCGGTGACCCTGGGAGGACGGCTAACAGACCACCAGGAGGCTCTTGGACTCATTGCTCAACTATGCAGTAGAGAGGAGGATTAGCTCAAGCTGAGCACCGAAGCAAGGATTTGGCGTTTGGCCATTTATCCATCACCTGGCGGACTGAGAGAGACACGACCATACTCTTTGTCTCTTTTCACCTAAATCTCCACTTCACTCCCTTGTtattctccctctccttctccctttCTCCTTCTACCCCATCTTTCCACTCTCCCTCTCAACCATGACCCTTCTATCAGAGGACCAGTCAGCGAGGCCCCAACCCTGCCGGCTCCCAGAGCCTGGCAAACACATCAGCACTTCTTTGTACCCAACAGACTGCATTGGCTCCAAAGAGTACTACATGGAAagtgaggagtgtgtgttcGGAGCCGTAGAGCCCCCAAGGCGCTCAAGGGGTCGCCTCATCCTCCACAGCATGGTCATGTTTGGAAGGGAATTCTGCTACGCTGTGGAGGCAGCATTCGTTACACCGGTACTTCTCAGCGTGGGCCTACCCCGCAGCCTGTACAGCTTGGTGTGGCTGATCAGTCCCATTCTGGGCTTCCTGCTCCAGCCCATCATCGGCTCGGCCAGCGACTACTGCCGCTCGCCGTGGGGCCGGCGGAGGCCTTACATCCTGGTCCTGGGCATCCTCATGCTGATTGGAATCACCCTGTTCCTGAACGGGGATGCTGTCGTCTCAGCAATAGTCAGCAACAGGTCATTGAAGAGTACATGGGCCATAGTGGTGGTGATGTTCGGAGTCGTGCTGTTTGACTTTGCTGCAGACTTCATCGACGGGCCCATCAAGGCCTACCTGTTTGATGTGTGTTCACATCGAGACAAGGAAAGAGGTCTGCACTACCATGCTCTACTCACAGGTCTGGGCGGAGCGTGTGGCTACCTGGTAGGGGCTATGGACTGGGGTCACTCTATACTGGGCCAGCTGCTGGGCTCTGAATACCAAGTCATCTACTTCTTCTCAGCATTGACCTGGAGCATCTTCCTCACCGTGCACCTCTTCAGTATACCAGAGCAACCTCTGAGCAAGGACCCACATGCCTCCGATCCCTTACCTCCCAGTGTCCTCCGCCTACTGGGCTCCCACAGCAATGGTTACGGAGCTCTGGCTAAAGAGCCCGTCTCAAATGTAGGTCCTGCATCCATCCCAGACCCCAGGCCTAGGTCTTTCTCCGCTCTGGGGGAGGCCAACTCAGTGACCTCCAGTGCCAAGCAGCCGAACAAGGAGgccCAGAAGAGGATGACGTTCAGGTCGATGATGAAAGCTATCATCAACATGCCAAACCACTACCGCTACCTGTGTGTCAGTCACCTGCTGGGATGGACGGCTTTCCTCTGCAACATGCTCTTCTTCACAGATTTTATGGGACAGATTGTGTACAATGGAAATCCTTATGCAGAACATAACTCCACAGCCTACGCCACATATGAGAGAGGAGTAGAAGTGGGCTGCTGGGGACTGTGTATTAATGCTGCGTCCTCTGCTCTATACTCTTatGTGCAGCGTTTTCTCCTCCCATACATCGGCCTGAAGGGATTATACTTTGTGGGCTACTTTGTATTCGGCATGGGTACCAGCCTGATTGGCCTCTTCCCCAACATCATCGCCACGCTCATCCTCTGCACCGTGTTCGGCGTCATGTCCAGCACGCTCTACACCATCCCATATAACCTGATAGCGGAGTatcagctggaggaggaggaaCTACTGAAGCTGCGAGGAAGCATTGGAAGTCAGCGAGGCTGTGGGGTGGACTGTGCAGCCCTCACCTGCATGGTCCAGCTGGCTCAGATCATTGTGGGCCTGGGTCTCGGCACTCTGGTCTACATGGCGGGTAGTGTAATAGTGGTGGTCATCTCGGCCTCGACCATGTCTCTGTTCGGCTGCATCTTCATTACCCTCTTTATCAGAAATGTGGACTAATTCTGATTATATATGTGTTTGAATGtactttttaataaatacaGATTCTTTATTATATCATTA

Function

symbol description
slc45a2 Predicted to enable sucrose:proton symporter activity. Acts upstream of or within melanocyte differentiation and response to light stimulus. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including melanoblast; optic vesicle; pigment cell; presumptive retinal pigmented epithelium; and retina. Used to study cataract. Human ortholog(s) of this gene implicated in oculocutaneous albinism type IV and pigmentation disease. Orthologous to human SLC45A2 (solute carrier family 45 member 2).

NR:

description
membrane-associated transporter protein isoform X1

GO:

id name namespace
GO:0009416 response to light stimulus biological_process

KEGG:

id description
K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779841.1 False 2199 mRNA 0.53 8 23169487 23202930
XM_039779842.1 True 2379 mRNA 0.53 8 23178064 23202930

Neighbor

gene id symbol gene type direction distance location
amacr amacr coding upstream 4286 23155838 ~ 23165201 (+)
LOC120545462 ppef2,LOC103366113 coding upstream 81077 23074570 ~ 23088410 (+)
LOC120544950 LOC103473489,LOC103142714,LOC106917991,LOC106959058,LOC108231074 coding upstream 133391 23015127 ~ 23036096 (+)
sdad1 sdad1 coding upstream 172646 22990154 ~ 22996841 (+)
LOC120545187 NA coding upstream 180171 22985204 ~ 22989316 (+)
nxnl2 nxnl2 coding downstream 20757 23223687 ~ 23226613 (+)
csgalnact1a LOC102302787 coding downstream 26907 23229837 ~ 23259542 (+)
plpp1a plpp1,LOC102797153 coding downstream 60542 23263472 ~ 23277088 (+)
dhx29 LOC103364531 coding downstream 98659 23301589 ~ 23312531 (+)
itga1 itga1 coding downstream 153293 23356223 ~ 23406309 (+)
G177079 NA non-coding upstream 27552 23141729 ~ 23141935 (+)
G177043 NA non-coding upstream 34600 23134649 ~ 23134887 (+)
G177039 scarb2,LOC104955650,LOC107395254 non-coding upstream 52771 23104642 ~ 23116716 (+)
G176974 NA non-coding upstream 235842 22893156 ~ 22933645 (+)
G176908 NA non-coding upstream 422161 22747108 ~ 22747326 (+)
G177169 NA non-coding downstream 127220 23330150 ~ 23331248 (+)
G177170 golph3,LOC103364537,LOC106962713 non-coding downstream 128968 23331898 ~ 23335577 (+)
LOC120545237 NA non-coding downstream 133377 23336307 ~ 23347393 (+)
G177177 NA non-coding downstream 221914 23424844 ~ 23426902 (+)
G177244 NA non-coding downstream 332953 23535883 ~ 23536398 (+)
klhl8 klhl8 other upstream 160653 22998253 ~ 23008834 (+)
G176870 cplx4 other upstream 632150 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 645082 22496413 ~ 22524405 (+)
G176753 NA other upstream 887324 22278880 ~ 22282163 (+)
G176526 NA other upstream 2222432 20946684 ~ 20947055 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 238053 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 520548 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 521236 23724166 ~ 23724245 (+)
LOC120546141 NA other downstream 523044 23725974 ~ 23726052 (+)
dnlz dnlz,LOC104941974 other downstream 952455 24155385 ~ 24157621 (+)

Expression


Co-expression Network