LOC120545498 (smarcb1b,LOC104928041,LOC103358289,LOC106535110,LOC100704669,LOC101070741)


Basic Information

Item Value
gene id LOC120545498
gene name smarcb1b,LOC104928041,LOC103358289,LOC106535110,LOC100704669,LOC101070741
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5043560 ~ 5100064 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779863.1
AGGACACCCTGATTTCCCATCTTTATCGTAGGTCCCAAACGCATCTGAAGAAGAGAACGCTGGTTAATAGCTAGTTAGCGATTGCGTAAAGATGCAACTGGCTCTTAGTAAAACCTTTGGCCAGAAACCAGTTAAATTTCAATTAGAACCAGATGGGGACTTTTACATGGTTGGGTCTGAGGTTGGAAACTATCTGCGCATGTTCAGAGGCTCTCTGTATAAAAGATATCCATCTTTATGGAGGAGGCTAGCCTCggtggaggagaggaagaaaatcGTAGCATCATCACATGCTACTAGTGTTACTCTGCTGAAGGCATCAGAATGTGAAGAGATCTTCGAGGGTAATGATGAGAAGTACAAGGCGGTGTCCATCAGCACAGAGCCCCCAGCTTACCTCAGGGAGCAGAAAGCAAAGAGGAGCAGTCAGTGGGTCCCCACGCTGCCCAACAGCTCTCACCATTTAGATGCTGTGCCTTGCTCCACCACCATCAACCGTAACCGAATGGGCCGTGACAAGAAGAGGACCTTCCCACTGTGCTTTGATGACCACGACCCTGCAGTGATCCATGAGAATGCAGCCCAGGTAGAAGCACTGGTTCCCATTCGTCTAGACATGGAAATAGATGGACAGAAATTGCGAGATGCCTTTACGTGGAACATGAATGAAAAACTGATGACCCCAGAGATGTTTGCAGAGATTTTATGTGATGACTTGGACCTGAATCCTCTGGCCTTTGTCCCCGCCATTGCCTCAGCCATTCGTCAGCAGATTGAGTCCTACCCCACTGACAGTATACTGGAAGAGCAGGCAGACCAGAGAGTCATCATCAAGcTGAACATCCACGTGGGGAACATTTCTTTGGTGGACCAATTTGAGTGGGacatgtcagagagagagaattcgCCGGAGTCATTTGCACTGAAGCTGTGCTCTGAGCTGGGTCTGGGTGGAGAGTTTGTAACTACTATCGCCTACAGCATTCGTGGTCAGCTCAGCTGGCACCAGAGGACCTATGCCTTCAGTGAGAACCCACTCCCGACAGTAGAGATTGCCATCCGCAACACAGGTGATGCAGACCAGTGGTGCCCCCTCCTGGAGACCCTCACAGATGCTGAAATGGAGAAGAAGATCCGAGACCAAGACAGAAACACAAGGCGTATGAGACGACTGGCCAACACTGCTCCTTCCTGGTAGAAAAAGACATGAAGCTGCATGAGATGACGTGTCCTCTGGAGACTCCTGGTACTCTGAAATGATCACGAAATACACACaaagtctctcacacacacacacacacacacacacacacacacacggatgttCCTGTAAGCATGACTGCACTCACAGACACGTTGTCAGTCTCCATGGACACCTCACTGtctgaacacaacacacaaatccAGGCATTCCTCTGCACACACAGTATGCCGTCATTATGTTTCACCTTGCCTTCAGCACATCAGTCATAGCAACAGTTCAAATCTAACCCTAACTAAAAGTTCCACACACCACACCATGCAACATTCACACTGTGCATGTTAAGTCAAAACACTTGGCATTACAGTACGATGACTGATTGTAATGTATCTGTATGAATACAATATGGACATTGTTTGTATAACATCATCAGGGCAACTCTTACAACAATCATTTTAAATTATTCAGACCTGTATTACATCTGTATGTAGTACTGCACTATAGGTGTTTTTCATCATTGTCACAgtaatattaatgattaatattAATGACACCTGTGTTTTCCAGATATGACAAGTCAAAGGCCCAATTGATACAAAATCTCTTATTTGAAGACACTCTTATTTACATTCAGCAACATACAGACAGGTGacaaattgaagaaaaaaacaacataaagtgTCTTAGTTAGGTGTTGGAACACCATTCTTCCAAAAGAAGATAGTGCTTTGATGGTTGGTGATATGGAGCCCTGTCTAACACGTCAGTCCTAAATATACCCTAGGTGTTCAATTGGTTTGAGATCAGGGGACTGCAAAGGCCAATGATTCGCATAATTTTCATACTCCGCAACCATTCAGTGACCCCTCGTGCCCTATGGATAGTGATATTGTGATCCTGGAAGAGACCACTGCCATTAGAATAGAAATGTTTCACCATAGGATAAAGATGGTCTCTCAGAACAACTTTGTATTGATTTGGATGACCCTTCCCTCTAGGGGACAAGTCGACACAAATCATGCCAGCCAAATGCCCACCACAGCATAACTGAGCCACCAGATCCCCTCACTGTAGGGGTCAAGCATTCAGAATTTATCGTTCTCTTGGTGTACGCCACACATGAACTCGTCCACTTGTCGAGAATATGATGAAGGATGATTCATCTgaccaaataatttttttccacaTCTCTGTCTGGTTTTTACACCACTGAACTTTCAAATGTGCATTCATCTTTGTAATGAGAGGTGTATGCACTCCATCTCTATGTAATTGTAAAGGGACTTTTCTTGCTGACACAGTCTGATCACATCCTGCATTGACATTCCCAGTCACCTTAGGAAGAattgctcttctttttttctttacattttgcaCTAATGCACGAGCATCACGATCATCAAATGTCTTTTTCTGACCCTATTTACTGATGTCTTTCCCATAGATCAAAATGTACTTTAGATCACTGTTCCTTTTGAAACACTAACCAGTTGAACTGTCTTTGTGACTGAAGCTCCTGCCATCCATGTCCCAACAATGAACCTTCTTTCAAAGTTACTTATGCtgcgttcagactgcaggccttAATGCTCAATTacgatttttttttagatccgATTTTATTTATGTTGCCCGCATCAGACTCAAGTACTGGGCACGGCCTGAAAGTGACCCACATGCGCAAATGAGTAATTCAGCGTCACGCATCGCACCCTGTTTTAATGCTCATCAAAATaaacccatggatgtattaagagaaccaaAGAGATGTAAATATTATGTAGTGCTCCTAGCTACCGCTAGCTACTAGCCGATAGCCGGCAGTTTGGGAAGAGAGACGTTAACAACGTTATATCCGTGCTACACTTTACAGCATACAGTCCTCGGATGTATTGTAAGATAATACAAATGATGAATTACAGCCATATATCCCTGATTACAGCTACAGGAACTGGGATGAACCGTCATGAGCCTGCAGAGTAGTCCCATGGGTCTGCTCACGTTAATTTTGTGCGTGCATTATGCCTAGTTAAATATATCTGGATTTGGCTATTATTGCATGTTACAacttttaaaacataatgaTTTAAATGAGGACTATTTAAGTGTTAGTACTGGTAAGTTGATGTAActcaaaaacatttattcacTGATATATAGACGTGTCTTTCGCCATGTAAAGTCTATGGGGAAGTCGTATGAATTCCGATCTGTCTGTCCAGACTCAGttcgcatttttttaaatatccaaCCTGGAACAGATTTGAAATCAGAACTGGAAAAGATCGGATGCCATGTGAGTTGGGCTGTTTAAACTGTCGGATAATTGgatttgtgtcacttttgcCTGCAGGCTGAACGTAGCCTTACATCATTTTATACAAGCCACAGAGCATGACCGGAGGTTACTTGCTTAATTGTACCATGTAGTGTACCTGTGTGGAAGCTTCTGCATTCATTATGTTTCCCTACTCATTTATTCAGGTTTGTCCTTTTATTCAGGTTTGTCCTTTAATTTGTCACCTGTGTGTATATGCGCCTCTGTTGGGCAGATCTCCAATCTGTTTGCAATCCATCTTTGTTTTCTCGGCTACGTGTAAATCAGGTTCAGCCCTTCTCCAGTCCAGAAGTAGGTAATGCAACTGAAGCTGACTGGTAACTGCTAAAAACGCCACAAGAAGAATATCTTCTGCACTTTAGCAGTTTGGTTACAATAGTTTAGCTAGCAATGGCTAACAACTATCCATAAGCTATCACAAACATATGAATGAATGTTACGTATGAACTATGGGTGAGATAAAGGTTTTTTATCGTCTTCATGAATCGTGCCGCTCCCCCACCCCATACAGATAAATGCTATAAACCCACACAAATCATCAGATCAACTTTACAGTATCTTGGTGCACCTTGTATTTTATCGTGTGTGGAGAAATGGCTGGAGCTGTTTTGCTTTTGCTTTTCAGCATCATGTTAGTGTAACTTCAGCTGCTATTATTacaaagacagaggagacaTACTGTTgatataatttaaaaataagacAATAAATGGATATATCCACAGACTGCTTACTGACATAAGTATACTATTGGAGTAAAGATTACGGATGTGTCTTGGAGAGATGGATTAATTATTTGTTGATCCATATTCTCACATGCAACAAATGTTTTCCACAGCAGACAAAAGAGCAGAAATGGGCCTGGCACCACTAGTTGCCAGTTGTATTTTGTCACCCTCTGTCTTGTTATGTAGAAAAATAGCAAAAACTATGTTATTGGCTGTTGTTTCAGACGAATGGACAGCgctgtttgttgtgtttaaGGCGTGGGTGTAGGAGCAGCGCTGTCCATCTGAAACAGAGCTCGTTAGACAGACTGACAGAACACATCACTTAGTTTAAGCATAAAATTTTCCCTCCATTTTAGCAATCCACAGAAGGAAAATGACAGGGTAGTGAAGGGACAGtcaacaagagagaaagagaggggcaAGCCGCAAACAGCTGTTTTTAAGCTCATATGATTCGTTCATAGATTCAAAAAATATTTAGCGCTCTGCTAGTACTACATTCTGAAGTGAGTGTTCTGATTAAGAGGTGTATTCCAAAATAGGCTATATATCATGATTTATTAGGAGAAACCAAGTAATTCTATATAAAATCAGACATTCAGCACCCCCATATAGCCCGGATGGAATGATCCTTGTTTTTATAA

Function

symbol description
smarcb1b Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nuclear chromosome. Predicted to be part of chromatin. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 3; atypical teratoid rhabdoid tumor; neurilemmomatosis; and rhabdoid cancer. Orthologous to human SMARCB1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1).

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

GO:

id name namespace
GO:0006337 nucleosome disassembly biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0006281 DNA repair biological_process
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779863.1 True 4914 mRNA 0.42 9 5043560 5100064

Neighbor

gene id symbol gene type direction distance location
ppp6c ppp6c,LOC102313764,LOC102783418,LOC100701794,LOC104928043,LOC103372694,LOC101475652,LOC108228845 coding downstream 32250 5002320 ~ 5011310 (-)
scai scai coding downstream 45603 4909583 ~ 4997957 (-)
sptan1 sptan1 coding downstream 211389 4771749 ~ 4832171 (-)
pkn3 LOC103374969 coding downstream 311247 4677906 ~ 4732313 (-)
naif1 naif1 coding downstream 431024 4607724 ~ 4612536 (-)
derl2 derl2 coding upstream 515 5100579 ~ 5125437 (-)
pam pam coding upstream 77093 5177157 ~ 5313433 (-)
LOC120545938 LOC101480421,LOC106530361 coding upstream 432321 5532385 ~ 5557976 (-)
LOC120545046 LOC101480421 coding upstream 465975 5566039 ~ 5573779 (-)
ccni ccni,LOC106529109,LOC106925549,LOC106963610 coding upstream 758909 5858973 ~ 5885428 (-)
G172952 NA non-coding downstream 5437 5034847 ~ 5038123 (-)
G172950 NA non-coding downstream 26353 5017007 ~ 5017207 (-)
G172948 NA non-coding downstream 29848 5013453 ~ 5013712 (-)
G172944 NA non-coding downstream 82772 4954205 ~ 4960788 (-)
G172929 NA non-coding downstream 134980 4905888 ~ 4908580 (-)
G172981 NA non-coding upstream 29755 5129819 ~ 5130123 (-)
G172982 NA non-coding upstream 34266 5134330 ~ 5134613 (-)
G173050 NA non-coding upstream 253638 5353702 ~ 5354063 (-)
G173055 NA non-coding upstream 261531 5361595 ~ 5362226 (-)
G173093 NA non-coding upstream 278813 5378877 ~ 5380737 (-)
odf2a LOC103374699 other downstream 146203 4846279 ~ 4897357 (-)
G172920 NA other downstream 272257 4770817 ~ 4771303 (-)
dpm2 dpm2 other downstream 483792 4552871 ~ 4559768 (-)
cdk9 cdk9 other downstream 895747 4139166 ~ 4147813 (-)
G172620 NA other downstream 1099729 3886588 ~ 3943831 (-)
LOC120545230 NA other upstream 296569 5396633 ~ 5400678 (-)
LOC120544971 NA other upstream 1268243 6368307 ~ 6374489 (-)
LOC120546140 NA other upstream 1720748 6820812 ~ 6820866 (-)
G173470 LOC103389048,LOC105418623 other upstream 2052806 7152870 ~ 7160087 (-)
G173727 LOC107687935 other upstream 3257659 8357723 ~ 8358027 (-)

Expression


Co-expression Network