prkab1a (prkab1,LOC103357303)


Basic Information

Item Value
gene id prkab1a
gene name prkab1,LOC103357303
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 12057731 ~ 12068419 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779877.1
ACAACTGCGCGTGCGCAAACCAGGGGGCGAGTTTGTTTACCgtgacaaaatgttttgtttcctAACCCGATGAAATGGGTCAGATGAGCTAACACGGATAGCTACGACGCTAAACGCTTCTTAGTGACCTTGCACCAGCCTACAAGAAGACAACGCCATGGGGAATACCAACAGTGAGAGGGCTGCCATGGGACATGGAGAGAAGGCTCAGAGGAGGGACAGCCGAGGAACCAAGGACGGAGGGGGGCCTAAAATCCTGATGGACAGCCCTGAGGACGCAGATATTTTTCATGGTGATGACATGAAAGCACCTTTAGGGAAAGAAGAGTTCCTTAAATGGCAGCAAGACTTAGAAGCAGATGACAAAGGGCCAACTCTAGACCGCCCCACAGTCTTTCGCTGGACTGGAGATGGCAAAGAGGTCTACCTCTCTGGATCCTTCAACAACTGGGCCAACAAGATTCCCCTTATTAGAAGTCAGAACACCTTTGTGGCCATTGTTGATCTACCTGAAGGGGAGCATCAGTACAAGTTTTATGTGGACGGCCAGTGGACCCACGACCCAGCTGAGCCAGTTGTCACCAGTCAGCTCGGGACAGTCAACAATATCATCCAGGTGAAGAAAACGGACTTTGAGGTGTTTGATGCTCTAATGGTGGACTCGCAGAAATGCTCCGACATGTCAGACCTCTCCAGCTCTCCTCCCGGGCCCTATCACCAGGATGCCTATGTTCCTAAACAGGAAGAGAAGTTTAAGTCTCCACCCATACTCCCACCCCACCTGCTACAGGTCATCCTCAACAAAGACACTGGGATTTCTTGTGACCCTGCATTACTCCCAGAACCCAACCATGTCATGCTCAACCACCTCTATGCTCTTTCCATTAAGGATGGAGTGATGGTGCTCAGTGCGACACACCGCTACAAGAAGAAGTATGTCACCACCTTGCTATATAAGCCCATCTGACTGAAGACTTGCCTTTTCAATTCCGACCGAGTGTGTTAACTGTACACGGAGTGTACAAAATATTAGCTCTGCCTGTTCTTTCTATAACTCAGAGAGAGCAGGTGAATCCGGGACACAACGCCTGGATGAGAATCTCAGATTAAGCTCAAACTAATGAGAGGTTAACAGCTCAGAGATTATATCTTGTACACTCACTGTATACCCAGTTGTCGTACACATCTGTTTAGGATGATACAATGCCGCTCAGTCACTCCAATCCTACATACCCTGCCTTTAATTTGTTCACTGATTACCCTCTGAGGTTTTCAACACTATCTTTGCTTAGTAGACATAGAGAGGCAGTACTAATGAGGTAGGACACTATGACATGTCTATGatcaaaacagacagaaagaggaggaTTGGTAATGCTGGGAAAATGTGACTGAAAGTCCTCAGATGCTTGAGGCTGCTGTAGTGTTTCCCACCATTGAGAAGACAACAGCGCTACAATCAAGAATGTGAACGTCGACGTCAAAAGAAGGAATAAATGCACTGCAGTAGTTCTCCACTGTTTTCATTTGCCTGTTTATATTGATAAATTGCTGAGTTTTATTTAGTGATAGTGAAAAAGCACACAGTAGATATGTTTTTATCATTCAAGTGTTCAgtaatgtgtattttcttttgtcttttttttctactttggTTGATGAtgtggtttgttttgttgtcaAAAGTGTTCTATAGTTGGTTGCGGTATTGTGGTAAAGATTTAAAAGAGCAGCTTGTTAGTTGGGATCAAGACAACGTAGTTAGACCAAAACATAAtgatttatgattttctgaCAATTTTTGGTCTAAACTTTATTAGCTTTGCACTACGAGAACAAAGTGTATTTTTAATGTAGAATATGCATACAGTGTATGTACACTTGCAGCACGACAATGTATCGGAAGATGCTTACCCTTTTGAATGCAAAAGAAGGTTAAGTGGTCTTTACACTGAATAACGTAATGTTCCTTCTTTAATTCTATATGAATGCATTCCAAAAATTTAAGAGTCACATGAGGTAGTTGTTGCCCGCCGGCTTAGTCAATATGGCACCATTGGTTTTGTGACATGGAACATACCCAATCTTCAGCAGCAGTGCCAGTTTCAGATGGTTAATGATAAAACACTTAAGACATTAATATTTAGGTAGACATTACCAAATGACTAATGAAGGGACCAACATAGGATTATGAGTTTATTagggttttttgtttgtttatagtTGACATGTTTGTACTGTTCATggtttatgtatttcatgaagTATGAAAGACTGGAATGTGTTTTAAGTTAAATATATGACTTGTAGCATCCCTTTA
>XM_039779878.1
ACAACTGCGCGTGCGCAAACCAGGGGGCGAGTTTGTTTACCgtgacaaaatgttttgtttcctAACCCGATGAAATGGGTCAGATGAGCTAACACGGATAGCTACGACGCTAAACGCTTCTTAGTCTTCTCTGTGTTGGCTCTTTACTTATAGTGACCTTGCACCAGCCTACAAGAAGACAACGCCATGGGGAATACCAACAGTGAGAGGGCTGCCATGGGACATGGAGAGAAGGCTCAGAGGAGGGACAGCCGAGGAACCAAGGACGGAGGGGGGCCTAAAATCCTGATGGACAGCCCTGAGGACGCAGATATTTTTCATGGTGATGACATGAAAGCACCTTTAGGGAAAGAAGAGTTCCTTAAATGGCAGCAAGACTTAGAAGCAGATGACAAAGGGCCAACTCTAGACCGCCCCACAGTCTTTCGCTGGACTGGAGATGGCAAAGAGGTCTACCTCTCTGGATCCTTCAACAACTGGGCCAACAAGATTCCCCTTATTAGAAGTCAGAACACCTTTGTGGCCATTGTTGATCTACCTGAAGGGGAGCATCAGTACAAGTTTTATGTGGACGGCCAGTGGACCCACGACCCAGCTGAGCCAGTTGTCACCAGTCAGCTCGGGACAGTCAACAATATCATCCAGGTGAAGAAAACGGACTTTGAGGTGTTTGATGCTCTAATGGTGGACTCGCAGAAATGCTCCGACATGTCAGACCTCTCCAGCTCTCCTCCCGGGCCCTATCACCAGGATGCCTATGTTCCTAAACAGGAAGAGAAGTTTAAGTCTCCACCCATACTCCCACCCCACCTGCTACAGGTCATCCTCAACAAAGACACTGGGATTTCTTGTGACCCTGCATTACTCCCAGAACCCAACCATGTCATGCTCAACCACCTCTATGCTCTTTCCATTAAGGATGGAGTGATGGTGCTCAGTGCGACACACCGCTACAAGAAGAAGTATGTCACCACCTTGCTATATAAGCCCATCTGACTGAAGACTTGCCTTTTCAATTCCGACCGAGTGTGTTAACTGTACACGGAGTGTACAAAATATTAGCTCTGCCTGTTCTTTCTATAACTCAGAGAGAGCAGGTGAATCCGGGACACAACGCCTGGATGAGAATCTCAGATTAAGCTCAAACTAATGAGAGGTTAACAGCTCAGAGATTATATCTTGTACACTCACTGTATACCCAGTTGTCGTACACATCTGTTTAGGATGATACAATGCCGCTCAGTCACTCCAATCCTACATACCCTGCCTTTAATTTGTTCACTGATTACCCTCTGAGGTTTTCAACACTATCTTTGCTTAGTAGACATAGAGAGGCAGTACTAATGAGGTAGGACACTATGACATGTCTATGatcaaaacagacagaaagaggaggaTTGGTAATGCTGGGAAAATGTGACTGAAAGTCCTCAGATGCTTGAGGCTGCTGTAGTGTTTCCCACCATTGAGAAGACAACAGCGCTACAATCAAGAATGTGAACGTCGACGTCAAAAGAAGGAATAAATGCACTGCAGTAGTTCTCCACTGTTTTCATTTGCCTGTTTATATTGATAAATTGCTGAGTTTTATTTAGTGATAGTGAAAAAGCACACAGTAGATATGTTTTTATCATTCAAGTGTTCAgtaatgtgtattttcttttgtcttttttttctactttggTTGATGAtgtggtttgttttgttgtcaAAAGTGTTCTATAGTTGGTTGCGGTATTGTGGTAAAGATTTAAAAGAGCAGCTTGTTAGTTGGGATCAAGACAACGTAGTTAGACCAAAACATAAtgatttatgattttctgaCAATTTTTGGTCTAAACTTTATTAGCTTTGCACTACGAGAACAAAGTGTATTTTTAATGTAGAATATGCATACAGTGTATGTACACTTGCAGCACGACAATGTATCGGAAGATGCTTACCCTTTTGAATGCAAAAGAAGGTTAAGTGGTCTTTACACTGAATAACGTAATGTTCCTTCTTTAATTCTATATGAATGCATTCCAAAAATTTAAGAGTCACATGAGGTAGTTGTTGCCCGCCGGCTTAGTCAATATGGCACCATTGGTTTTGTGACATGGAACATACCCAATCTTCAGCAGCAGTGCCAGTTTCAGATGGTTAATGATAAAACACTTAAGACATTAATATTTAGGTAGACATTACCAAATGACTAATGAAGGGACCAACATAGGATTATGAGTTTATTagggttttttgtttgtttatagtTGACATGTTTGTACTGTTCATggtttatgtatttcatgaagTATGAAAGACTGGAATGTGTTTTAAGTTAAATATATGACTTGTAGCATCCCTTTA

Function

symbol description
prkab1 Enables protein kinase activity. Involved in positive regulation of gene expression and protein phosphorylation. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus.

NR:

description
5'-AMP-activated protein kinase subunit beta-1-like isoform X2

GO: NA

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779877.1 False 2320 mRNA 0.43 8 12057731 12068419
XM_039779878.1 True 2349 mRNA 0.42 8 12057731 12068419

Neighbor

gene id symbol gene type direction distance location
LOC120544995 LOC103357302,LOC104927697 coding downstream 1119 12054684 ~ 12056612 (-)
LOC120544994 LOC103357302 coding downstream 4152 12052635 ~ 12053579 (-)
rxraa rxra,LOC102786191,LOC102297781 coding downstream 640079 11183862 ~ 11417652 (-)
vav2 vav2 coding downstream 916806 10913714 ~ 11140925 (-)
si:ch211-127i16.2 LOC103374795,LOC101469412,LOC102289489,LOC100706625,LOC102789715 coding downstream 1233003 10772857 ~ 10824728 (-)
phf24 phf24 coding upstream 9159 12077578 ~ 12114065 (-)
pigo pigo coding upstream 93874 12162293 ~ 12173384 (-)
LOC120546050 stoml2 coding upstream 106964 12175383 ~ 12184483 (-)
stbd1 NA coding upstream 243817 12312236 ~ 12318795 (-)
musk musk coding upstream 354415 12422834 ~ 12467165 (-)
G174341 NA non-coding downstream 291271 11766230 ~ 11766460 (-)
G174335 NA non-coding downstream 311311 11746071 ~ 11746420 (-)
G174327 NA non-coding downstream 396869 11660525 ~ 11660862 (-)
G174325 NA non-coding downstream 397907 11659436 ~ 11659824 (-)
G174324 NA non-coding downstream 436071 11621447 ~ 11621660 (-)
G174403 unc13b,LOC102798935 non-coding upstream 186399 12254818 ~ 12255275 (-)
G174430 NA non-coding upstream 218995 12287414 ~ 12342288 (-)
G174443 lpar1 non-coding upstream 340905 12409324 ~ 12416934 (-)
G174481 NA non-coding upstream 497283 12565702 ~ 12569571 (-)
G174482 NA non-coding upstream 558788 12627207 ~ 12627427 (-)
LOC120545042 NA other downstream 893237 11153767 ~ 11164494 (-)
adra1ab LOC104947653,LOC100705829 other downstream 1661987 10378956 ~ 10395744 (-)
gtf3c4 gtf3c4,LOC102793669 other downstream 1949442 10097251 ~ 10108289 (-)
grin1a grin1a,LOC107600932,LOC103389281,LOC105024190,LOC106513393,LOC100534577,LOC101475684,LOC104936329,LOC102201489,LOC102777117,LOC102302700 other downstream 2154724 9861001 ~ 9903007 (-)
G174120 NA other downstream 2214232 9842812 ~ 9843499 (-)
G174439 NA other upstream 288509 12356928 ~ 12357890 (-)
G174442 lpar1 other upstream 322136 12390555 ~ 12391484 (-)
tmem267 tmem267 other upstream 562806 12631225 ~ 12637494 (-)
cntfr cntfr,LOC108232720,LOC103473535 other upstream 577867 12646286 ~ 12918560 (-)
ier3ip1 ier3ip1,LOC106633120,LOC102779563,LOC104954869 other upstream 1372861 13441280 ~ 13444079 (-)

Expression


Co-expression Network