hmgcs1 (hmgcs1,LOC107394923,LOC105917111,LOC102790295)


Basic Information

Item Value
gene id hmgcs1
gene name hmgcs1,LOC107394923,LOC105917111,LOC102790295
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2145367 ~ 2159051 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780032.1
GCGAGCTGTGATTGGCCAGGAAGCAAGGCGCTGTAGTGCAGGGTGTACACTGCTCTATCATCGGTACATATAAATACACTTCTGCCGGCTGGATCCAAATAATAACGGAGTAGTAACTCACCGTCTCTGGAGTTAACTtcacacacagGATGCCGGGATCAGGACCAATCAGTTGCTTGGGACCGTGGCCCAAAGATGTGGGTATCATTGCCTTGGAACTGTACTTCCCATCCCAGTATGTGGACCAGGCCGAGCTGGAGCAATTAGACGGCGTGACAGCTGGTAAATACACTGTGGGCCTGGGCCAAGCTCGCATGGGCTTCTGCTCCGACCGCGAGGACATCAACTCTCTGTGCCTGACGGTGGTCCAGAGGCTCATGGAGAGGAATGGCCTGTCCTACGACAGTGTGGGTCGACTGGAGGTCGGCACTGAGACCATCATCGACAAGTCTAAATCTGTCAAGACCGTCATCATGCAGCTGTTTGAGGACTCTGGCAATACAGATGTGGAGGGTATTGACACCACAAACGCCTGCTACGGGGGTACAGCTGCACTCTTCAACGCTGTCAACTGGGTGGAGTCCAGCTCATGGGATGGGCGATATGCTTTGGTTGTAGCGGGGGACATTGCTGTCTACGCCACAGGAACTGCCCGGCCTACAGGGGGTGCAGGTGCAGTGGCCATGCTTGTCGGGCCTAATGCTCCTCTGGCCTTTGAACGAGGTCTGCGAGGAACCCACATGCAGCACGCATATGACTTCTACAAGCCAGACCTGATGTCCGAGTATCCTGTGGTGGACGGAAAGCTGTCGATAGAGTGCTACCTGAGTGCCTTGGACCGCTGCTACTCTGTGTACCGGAACAAGATCCATGCGCAGTGGCAAAGAGAGGGTTCAGAAGAGCGTTTCAGCCTGGACGACTTTGGCTTTCTAGTCTTCCATTCTCCCTACTGCAAGCTGGTGCAGAAGTCGTTGGCTAGGCTGATGCTGAATGACTTTCTGAGTCACCCCAGCCCCAACACTGAGACGGGACCCTTCACAGGCCTCGATGCTTTCAGAGATATAAAGCCAGAAGAGACCTACTTTGACCGGGATGTGGAGAAGGCCTTCATGAAGGCCAGTGCAGATCTGTTTGAGATGAAGACCAAGGCCTCCCTGCTGATCTCCAATCAGAATGGAAACATGTACACCCCTTCTGTCTACGGCTGCCTTGCATCACTCATTGCACAACAAACAGCTTCACAGATAGCAGGACAGAGGATTGGAGTCTTCTCCTACGGTTCAGGATTTGCTGCTACTCTGTATTCTCTCAGAGTCACACAGGACCATACACCTGgctCTAGTCTGGACAAACTTGTGTCCAGCCTGAGTGACCTGAAGGTCCGACTGGACTCGAGGCAGAAGGTTTCGCCTGCTGTCTTCTCTGAGAACATGAAGCTGAGAGAGGATACACACCACTTAGCCAACTACGTCCCTCGAGGCTCAGTGGAGGATCTGTTTCCAGGGACGTGGTACCTGACACGAGTGGATGACAAACACCGCAGGGAATATGCACGAAGACCTGTGGACGATGACCTGACAGCAGCGCCAGAACTTGTTCGCTCCAGCACTGCACCAGAGCACATCCCCAGTCCAGTCAAGAAGATGCCTCGCATCCCTGCAGCCACCGCTGGCCCAGACGCCGCCGTCAGCAACTGACCTCACTTACCTCTGAGAGCACAGGCAGATGTTTGCATGGAGTGTTGCTGATATTGAGTTCAACACGCAGACTTCCCTCCTGGCAGCTGGCAGCCAGTGGCAGGAAGAGGAAATGGACATAGTTAATGTGGCTGCGGGCCTCGTGCTGAATAAAAGATTAAAGGGAGGTGTGCCGCAAATGTGTTAATGTCTTTAAAATAGTGCAGCTGTTTGCGTTCAATACCTCAATTTCCTTCAAAAAGATGCGGTCCGTTACCTGCAGGACATGGCAGGTTCGTCATGTGATCCTGTCACCGCACATCAGGAACACTTAGACTCAAAGTGATGCTGCACCTCTCTCAGCCTGCACACAGTGGGGGCactctcactttcaactgctgTTGACTTCTGTAGCTGAGCTAATGAACTGTAGTCAACATGTTAACCTGGTAGGAAACCgcgacatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtcaactgcCTCACCCTCTTCCATAGATCTGTGTTAAACTGAAGCTGTTTTGGATAACACCagtcattttagtttttctaTTTGCCTTTTATTGCCATGAAATGTCTAAACCCATGGAGTGATTTGGTACAGTGCGTAGCTGCTGCTGTTCTGCGTCAGGTTTACTTAACCTTCCAGTCATCTGTCTGATTGTTTAGAGACTATAAAGAGACCGCTTGAGGACAAGCACTACGGACATGTGTTATAAAATACTTTAACACTTTGTTTCTTCTATTGATGAAACAGATAATTGATTAATAGATGAGTTGATTGTCAGATAATATTTAATAAGGGATCGTTTTACTAATTTATCAAGCAATGCCgaacatgctctggttttgcttgtttttttgtggacattttcactattaaaaaaaaagaaaatagtttttGTAGACTAGATGATTGATAAGATTGGATATGATTATTAATTGCAGcccattcttcttttttaaCCACTTTGCCTCACTACCGCCACATCTAGAGTAACATGTGCAACCGTTGATCATAGAGGAGAAAGAATGAGTACCCAGTAAGTTAGTTGTAAATTGTTGCCACTACAACATTATGGACTGCAGTAGTCATACTGCAGCGTGTCTGAACTCTTCTTTAGAGACGTAGTGATTAATCggttagttgtcaactatttaaattaatcgccaactgaTTATCAATTCATCATCGTCCCTttttaagaaggaaaaaaagtctaaattctctgattccagcttcttaaatgtgaatatgtttcttctctcctctgggacaggaaactgaatatatttgagttgtggacaaaacaagacatttgaggacgttaTCTTGGGATTTGGgaaattttcactttttttctgacattttatagaacaAACAACTAATTGACATTAGATTAGTTAACTTGCAGCCCTACTCTTGGTATGGAAATTGTGCTCTGTAGTAGAGTGCGGCCAACATCCGTGGGTTTAGACTTTCTAGAAAAACATTACTCTGGTGTCATCCTTAATAGTGCAATCAGGATTATAGTAGTGACCGTACAACACCCTTAGCTTTAAAAAATCCAAACtatatacagtaccagtcaaacgTTTGGATACAAGATGCAGCCCTTCAATGACATGATGTCTAACCCACTTAAGTTTACACTGCAAATATCTGAATCTGCTGAGTACAACAGCTTCAAGTGAGCGGAGCCCCACTGCtccagccagcagcagcagcagcactttaTTAGGTCCACCAAGCTAAAAGCAATACAGCagccctgcaataaatcctacctCCTTTAGGTTCTAATCAGTTTGAGTGGTGTTGTGTGCGGCTGTTTAACTTGTTATGCTGGAGGTGTTTCTAACATATTGTTCACGTCATTTCTAACAACGAGGGCAGACTAAATATTAAACACCTCTTTGTGTAATGCGGAATCACCATGATGTTGAATCACCACCTCCTAAAAACGgttcaacacaaactgaacttTAGAACCTACACTGGAAACCAAGTGTGAATATGACCTGTGGCCTActaaaggttttttttctgtctattTTATTCCTTTACAAACTGACAGATGCTGAGCAAGGCAGCTTAGGTTCTTCACTTTTCCTACAAATAAAATGTGACGTGGCTCCAGTTTTACAGACACTACACGGAGTGCCGAGTTGGGAAGTTGAGGGACCAGAGAGTCTGGGGCATCCCCAGCAAATACACAGAGCTGGGgagtgtttattttgtggagagTCATACGAATATTACAGATTGCACCTTCAAGCGTAAACAATATATCGGACAATTATGCAAgagttgtttgtgttgtgaaacCATGTTGCGGGCCAGGGATTGCTACACTTTGACTGGTGTCTCTTGTCATTACACCAAACTGCCACACATTCATATAAACCAGTGTCACGTTAAAATCGCTGCTGTGAATATGTACCGCAGTGTtccagtgttttcttttcttgtccGTTTCATTGAAATAGCTGAAGTGTaacatgttaattcatactgaagcCTTAATGTCGAAGGGCTTTGTTTCATGTTGTTGTAGGTCGGGACTTAAATGCAACATGCAGGACTGAACAGCTTCAAATCTTAAGTCAGCAAATTCTTGTTTTGTTCTCCGTTTTgtttcaagtttgttttttcttcctgtGAATCATTGACATTGATTTGACAGCAGTGGTCTGTTCCTGGTCCTGTTGACGCTCGGACTGGCTCAAAGACTTGGGACAGTTGATGTCAATGTGACTAGGTTCTTGGGAAGCCTTACAATAAGCATGTACGAACTGTAAACAGACAAAGTTTTACTTATAATAATGTACAGATATTCTTTTTAATTGTACAGTCAGAGTTGGTTCCTCTTCAGGCTGGCGCCAGCGTCACCAAAATGCTTGTCTGGTGCCCGCCTCAGAGGTCACATGATCTTTACCGATGTTGATGATAAAGGTACAAATGTACAATTGTTTATCTTGTGTAGATATAAATGAATGGATATCTCATCAGATACATTTTATCCAGACAGTGTGTAGATTCAAATGTGTAAATTCTGAATAAATGGATATCGACATGT
>XM_039780033.1
CATTTTCGGTCATAGACGACTGAAGTACCAGGAAATCCCGTTGTGCCCTTTCCCCTACTTTTGCTCTCCTCTAAACACAAGCTTTATGTAGCTGTTTAGGATGCCGGGATCAGGACCAATCAGTTGCTTGGGACCGTGGCCCAAAGATGTGGGTATCATTGCCTTGGAACTGTACTTCCCATCCCAGTATGTGGACCAGGCCGAGCTGGAGCAATTAGACGGCGTGACAGCTGGTAAATACACTGTGGGCCTGGGCCAAGCTCGCATGGGCTTCTGCTCCGACCGCGAGGACATCAACTCTCTGTGCCTGACGGTGGTCCAGAGGCTCATGGAGAGGAATGGCCTGTCCTACGACAGTGTGGGTCGACTGGAGGTCGGCACTGAGACCATCATCGACAAGTCTAAATCTGTCAAGACCGTCATCATGCAGCTGTTTGAGGACTCTGGCAATACAGATGTGGAGGGTATTGACACCACAAACGCCTGCTACGGGGGTACAGCTGCACTCTTCAACGCTGTCAACTGGGTGGAGTCCAGCTCATGGGATGGGCGATATGCTTTGGTTGTAGCGGGGGACATTGCTGTCTACGCCACAGGAACTGCCCGGCCTACAGGGGGTGCAGGTGCAGTGGCCATGCTTGTCGGGCCTAATGCTCCTCTGGCCTTTGAACGAGGTCTGCGAGGAACCCACATGCAGCACGCATATGACTTCTACAAGCCAGACCTGATGTCCGAGTATCCTGTGGTGGACGGAAAGCTGTCGATAGAGTGCTACCTGAGTGCCTTGGACCGCTGCTACTCTGTGTACCGGAACAAGATCCATGCGCAGTGGCAAAGAGAGGGTTCAGAAGAGCGTTTCAGCCTGGACGACTTTGGCTTTCTAGTCTTCCATTCTCCCTACTGCAAGCTGGTGCAGAAGTCGTTGGCTAGGCTGATGCTGAATGACTTTCTGAGTCACCCCAGCCCCAACACTGAGACGGGACCCTTCACAGGCCTCGATGCTTTCAGAGATATAAAGCCAGAAGAGACCTACTTTGACCGGGATGTGGAGAAGGCCTTCATGAAGGCCAGTGCAGATCTGTTTGAGATGAAGACCAAGGCCTCCCTGCTGATCTCCAATCAGAATGGAAACATGTACACCCCTTCTGTCTACGGCTGCCTTGCATCACTCATTGCACAACAAACAGCTTCACAGATAGCAGGACAGAGGATTGGAGTCTTCTCCTACGGTTCAGGATTTGCTGCTACTCTGTATTCTCTCAGAGTCACACAGGACCATACACCTGgctCTAGTCTGGACAAACTTGTGTCCAGCCTGAGTGACCTGAAGGTCCGACTGGACTCGAGGCAGAAGGTTTCGCCTGCTGTCTTCTCTGAGAACATGAAGCTGAGAGAGGATACACACCACTTAGCCAACTACGTCCCTCGAGGCTCAGTGGAGGATCTGTTTCCAGGGACGTGGTACCTGACACGAGTGGATGACAAACACCGCAGGGAATATGCACGAAGACCTGTGGACGATGACCTGACAGCAGCGCCAGAACTTGTTCGCTCCAGCACTGCACCAGAGCACATCCCCAGTCCAGTCAAGAAGATGCCTCGCATCCCTGCAGCCACCGCTGGCCCAGACGCCGCCGTCAGCAACTGACCTCACTTACCTCTGAGAGGTATCAAGATCCAACAGTTTGAAAACTGTAATAACTAGACAATACTAGAGGTCAGAAGGCTAGCAAGAGACAACAGTGTCACCTCCAAAATCATTATACATTCAACTTATTTAGGTTGGAGCAGTGTGTCACAAAAGTGTTCAGTGGAGGCCTGTGGACAGATGTAGACACTCCTCAACTGCCAGTACCTTTCCTATCATCCACATGTAATACTGTCAGACAGTAAACTTCCTATTTCTATAGTCTAGAGTCTCTTTTGATCACAATACGTATTTGTTTTAGCaatcttttatttaaatgttaacatttgtacatcttttttttttttttgtatttgg

Function

symbol description
hmgcs1 Predicted to enable hydroxymethylglutaryl-CoA synthase activity. Acts upstream of or within animal organ development and oligodendrocyte development. Is expressed in several structures, including digestive system; immature eye; nervous system; pectoral fin musculature; and yolk syncytial layer. Orthologous to several human genes including HMGCS1 (3-hydroxy-3-methylglutaryl-CoA synthase 1).

NR:

description
PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic-like isoform X1

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0004421 hydroxymethylglutaryl-CoA synthase activity molecular_function

KEGG:

id description
K01641 E2.3.3.10; hydroxymethylglutaryl-CoA synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780032.1 True 4838 mRNA 0.45 11 2145367 2159051
XM_039780033.1 False 2005 mRNA 0.51 10 2148495 2158361

Neighbor

gene id symbol gene type direction distance location
tln1 tln1,LOC100711808 coding downstream 72261 1948903 ~ 2073106 (-)
tpm2 tpm2,LOC106571564,LOC107394912,LOC103389160,LOC108276716,LOC108427282,LOC107737084,LOC108242564,LOC103044350,LOC107670037,LOC107102752,LOC102218310,LOC107572193 coding downstream 201857 1887537 ~ 1943510 (-)
il6st NA coding downstream 281379 1820764 ~ 1863988 (-)
LOC120546089 NA coding downstream 284506 1858046 ~ 1860861 (-)
purg purg,LOC101478350 coding downstream 331539 1802998 ~ 1813828 (-)
LOC120545833 NA coding upstream 20437 2179488 ~ 2252955 (-)
dcp2 dcp2 coding upstream 94846 2253897 ~ 2279811 (-)
dcc dcc,LOC102787302 coding upstream 310124 2469175 ~ 2807464 (-)
mbd2 mbd2,LOC100708236,LOC103373628 coding upstream 1009575 3168626 ~ 3246890 (-)
LOC120545955 NA coding upstream 1118498 3277549 ~ 3281952 (-)
G172180 NA non-coding downstream 48203 2090423 ~ 2097164 (-)
G172151 NA non-coding downstream 55388 2089713 ~ 2089979 (-)
G172150 NA non-coding downstream 62125 2082808 ~ 2083242 (-)
G172111 NA non-coding downstream 198462 1946644 ~ 1946905 (-)
G172053 NA non-coding downstream 403937 1741024 ~ 1741430 (-)
G172231 NA non-coding upstream 170634 2329685 ~ 2329970 (-)
G172235 NA non-coding upstream 182575 2341626 ~ 2342031 (-)
LOC120544955 NA non-coding upstream 246724 2405775 ~ 2406868 (-)
G172283 NA non-coding upstream 490407 2649458 ~ 2729174 (-)
LOC120545025 NA non-coding upstream 649923 2808974 ~ 2809530 (-)
G172032 NA other downstream 543211 1596516 ~ 1602156 (-)
G171868 NA other downstream 974578 1170203 ~ 1170789 (-)
megf10 megf10 other downstream 998780 1040798 ~ 1146587 (-)
prrc1 prrc1 other downstream 1137179 994437 ~ 1008188 (-)
G172311 NA other upstream 825771 2984822 ~ 2985260 (-)
G172620 NA other upstream 1727537 3886588 ~ 3943831 (-)
cdk9 cdk9 other upstream 1980115 4139166 ~ 4147813 (-)
dpm2 dpm2 other upstream 2393820 4552871 ~ 4559768 (-)
G172920 NA other upstream 2611766 4770817 ~ 4771303 (-)

Expression


Co-expression Network