LOC120545631


Basic Information

Item Value
gene id LOC120545631
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5900452 ~ 5906700 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780162.1
gggagatattTTCTACCAGATCCTCGAGCCTGAGCAGCCTGACACCGGTCGACCTCCAGCAGCAGATGATGATCTTCTGCCACAACCAACTCTAAAAGAAGCCACAACTTCAGGGAGAAAACCAGCCAAACAGCTTCAACCACCTTCTCAGATGGTTGTATCGGACACATCGAGCGATGAGGGTGTAATCGGACCGACTCAGGGTCCAACTGTGCAGAGGTTTGTGGCTGAAACACCAGAGAGGGAACAACGAGTGCTGAACTCTCACTCTTCCTCTGAGGATTCCGACTCTGGAGGGAAAGGTCAAAACCTGAAGCAGTTTGGGCTGCAGGTCATCGTCAACTATGATCCAGAGCTGGATCAAGTGTGTGGATTGGAAGTAGGTGTGAAAGATGGAAAGGTGGGTAAAGATACAGCTGATAATACTGAGGAAGCCAGCAGTTTGGGTCACATTGGTCCCTCAGAGTGGCAGACTCCAGTAAAGCTCAGTGACGGCGCTCTCAGCACGTGGAAACATTGGCTCCAGAAATTGATGCATAAGAGTCGTGATAAGAAGCCCCGTCCACGTTGCCTACAGCACTTGACAGTCAAAACTGGAGGCCTCCTCCACCTTTCTGAAGATGAGAGAGATGAGGCACAGAGATATTCGACAAAAGCTAAGCCTGTGCAGAGCCTGAGGCGTGATCTGAGAGCGTGCATGTCCAAACGCTCGCTGCTGGTTCACAGTGCTGTCTCCGCCTCCCTCGGGGCTCCAGATGTGGTAATGGTGCCAGACCCGGTGGATACAGAAATATGGAGAGATCAGATCAGCCAACGTCTGACCCTCTCCTGGCAGGGGGAGGAGGCGTGGCGGGCGTGGTGGGAGGATCAGCTGGGGCTGAACAGGGAGGAGAAGGTGGAGGCTctgaagaggaaaaggaggagggagaaggaggcaAAGAGAGCCACCGGCCGACGCCTGGAGCTGTCCGGGAGCTTCACCTCGTCTGTCAGCTACCAGTCAGAGCTGGGCGATTTTTCCGATTCAACTGGCTGGTCCTCTGCAGCGAGCCAGGGGGCGTGGTCAGACACCGAAAGTAAGATGTCCCAGTTGGAGGGCTCTTTGGAGTGCGGGACGCCAAGAGCCTCAACACCCTCCACCATGCAAACTGACACTCCAGCTTACACACCGACCACCACACCTCAAAGTGTTAAAGATAAACAAGGTGACCAGCAGACTCCCAGCAGCTCCCGCACCCTTGCCCTGTCTCAGACACCAAAACCTGACTCCacactggccaatcagaggagcAACAAGCGTCCAGCTGAGGACTACCTCAGCTCTCTGTTTGCACCACAGgATGAGCCCTCGCAGCATGACGGTTATTTCCTGGAAGAGGGGAGCACTGTGCACCACCCACCTCCACCTATGGCCTTGTCCTCCACTCAGCTCCGTAGCTCCCAGTCTGTCCCTCAGAGGAGCCTCAGGATGGATCTGTCCCAGGACACCGCCGTCTGGTCAGGTTTCTCCCAGTCTCAGTCCCTCTCCCAGAGTTCACAGGGTCGGATGGGGCTGTCGCAGGCGTCGCAGCCCAAGAGGAAGAAGTCTCGAATGggattttgattcatcagttgGTCTGTCCATCATACGAAGGGGGAGTGAATCGAACTGAATACACGTGGAatacacgtttttctcctaatAACTCGCCAAAACAAAAGCAAGGGGCTGGACTCACCGGCCTCAAATTAAAAGGAATGTTTTTTGGATTTCTGGTGTCTTCAGCTGCCTCAGGATTTGTGAAAATGGATTTCTAATGGTATGGTATTATTCACTGGGATTGTACATACATGAATGAACTTAACTGTAAAATGGATCTAACGGAGGAGGATAAACTGAATGGATGATGGAAAAGGATCCATCACATTGTTGGTGATCCCTGAACACGTCTGCAGACTGGCTGAAGAAAACTGACTGCAACTAATttggtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaataatgTAGGAATACTAACAGAAGTAAGtaggaaaaagagaaactgaCTGGAGGCCCCTGCCTTTTTAAGAGAATATAAAAGCTGAAAAGAACTAAAGTGCCCTAAAGTTACTTAGTTTTTAGGAATTGTTACATCCTGGGACTTCTTGATTTGCCTAAATCCACATCTATCTGGTAATAAttacaactgtgtgtgtgttttgttaaaaTAGAAATCCTGAAAGTCTGCGTCGTTTGACTTTCCTCATCAGTATCTCTGTAAATGAAAGTACACCTCGCTCTTTGagataaattatttttatattccTTTCTACATCTGCTTCTCGAAACAAAACGGAACAGATTTGAATAACACCACTTAGTTTTGGGTAGTCCTTAGAAACCAACGGGACATGATAAAGCTTTGTCAGTCTTCTCAAAGACAAAGGGccacgtgaaaaaaaaaaaaaaaaaaaaaaaaatactttcatgGTTTTGTGAATTTCTCCCCAAGTTTTGATTAAAATTTTTGAAGACTTACAATTTGCCAAAATACAACATAACCTAGTATAAGGGCCAATGTAGCACGACTTTACTTTGTTTAATAAGCGAATTGTGTGACATAATTGATCAAATTTGTTCAAATAACTATCAAATaagcttttctttttaatgatgCGATATATTGATGAATATTTTACTTCACTGCCAAAGACCTCATCTGTCAACTTCACTGTGGACACAAAGTAAATTATTCAGAAACACTTACTACCCAATTACTATTTTAATGTGGAGAACTTGGATTTGTTTTCTCCTAATGATGGCCCTAATGCTCTGTCATACTAAAAGAAATATCTGCTGGAGGATTTTAACTGTAGGACACCCTGCCCTGTGAGAGTGCAACATCAATCTCTAAATAAATCTGTTATGTTCA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780162.1 True 3026 mRNA 0.47 2 5900452 5906700

Neighbor

gene id symbol gene type direction distance location
ccni ccni,LOC106529109,LOC106925549,LOC106963610 coding downstream 15024 5858973 ~ 5885428 (-)
LOC120545046 LOC101480421 coding downstream 326673 5566039 ~ 5573779 (-)
LOC120545938 LOC101480421,LOC106530361 coding downstream 342476 5532385 ~ 5557976 (-)
pam pam coding downstream 587019 5177157 ~ 5313433 (-)
derl2 derl2 coding downstream 775015 5100579 ~ 5125437 (-)
LOC120545633 NA coding upstream 659 5907359 ~ 5919472 (-)
fech fech coding upstream 391041 6297741 ~ 6322153 (-)
nars1 nars coding upstream 421707 6328407 ~ 6347650 (-)
txnl1 txnl1,LOC102796010 coding upstream 446513 6353213 ~ 6362103 (-)
LOC120545786 rab27b,LOC104935727,LOC103374166,LOC104963949,LOC108228659 coding upstream 1281495 7188195 ~ 7274967 (-)
G173231 NA non-coding downstream 10707 5889275 ~ 5889745 (-)
G173228 NA non-coding downstream 14003 5885763 ~ 5886449 (-)
G173192 NA non-coding downstream 51217 5846947 ~ 5849235 (-)
G173191 NA non-coding downstream 57574 5839229 ~ 5842878 (-)
G173165 NA non-coding downstream 218518 5681437 ~ 5681934 (-)
G173263 NA non-coding upstream 164492 6071192 ~ 6074877 (-)
G173290 NA non-coding upstream 309868 6216568 ~ 6217552 (-)
LOC120545015 NA non-coding upstream 312759 6219459 ~ 6221707 (-)
G173336 onecut2 non-coding upstream 363379 6270079 ~ 6270377 (-)
G173324 NA non-coding upstream 363730 6270430 ~ 6284200 (-)
LOC120545230 NA other downstream 499774 5396633 ~ 5400678 (-)
odf2a LOC103374699 other downstream 1003095 4846279 ~ 4897357 (-)
G172920 NA other downstream 1129149 4770817 ~ 4771303 (-)
dpm2 dpm2 other downstream 1340684 4552871 ~ 4559768 (-)
cdk9 cdk9 other downstream 1752639 4139166 ~ 4147813 (-)
LOC120544971 NA other upstream 461607 6368307 ~ 6374489 (-)
LOC120546140 NA other upstream 914112 6820812 ~ 6820866 (-)
G173470 LOC103389048,LOC105418623 other upstream 1246170 7152870 ~ 7160087 (-)
G173727 LOC107687935 other upstream 2451023 8357723 ~ 8358027 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other upstream 2718782 8625482 ~ 8634067 (-)

Expression


Co-expression Network