LOC120545633


Basic Information

Item Value
gene id LOC120545633
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5907359 ~ 5919472 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780166.1
CATACCCCGAGCTTGACTGTCGTTTTCTGGTCGCGAGTCTGCACGTGTTCGGTGGTACACTGAGGGTTTTGGACAATTCTACCACAGTTCTGTGCCTCACCGGGCTGTTCTGTTTCCTTTGACATGTACAACTTGTTGTTTGAGGTTCTGAACGCGTGTCCTGATGATTAGAAGAGGAGAAACGTGATTATTCGTGCCATCTGTCCGGggagctagcgttagctaagcCGCAGAACAACATGTTCAGACGTGTTCCCGTACACACTGAGAGAGTAAAGAAACGACgacacaaacattattagaaaACTGGACAGTTATTTTAATTAGATTAGTTTGACAGTTTAAATGGATTACCAGTTCCCACAGCAGCTTTTTCCTTCGTTTTACAACTGCGCACCTCCGGACTCGGTCCTGAAACACTGCGCTGGAAACTGGGGCTGCTACGACCGAGTCAGACCTCAGGGCACCTCTGGTCCTCTCTCCAGCTGGACATTCACATCCAGGCATCAGGTCAGAGGGGAGACGTGGCGTCACACTGAGCCAATACCAATTCCcctcctgtctcctaaaaagtCTTTCCTTTGGCCTACTACGCCCCCAGATCCGCTGGACTTCACAAAACATATGGAGAACTTCTTCATGGACCACTACCTGGACGCCTTCGGGTGCATGAGTGAAATTCTGAGCGAAAATTTCAACTTTAAAcaaggacagagagagagATATCGCAGGGATTCAGTCCACATGTGGAAGGTGAAAAACTTCCTTGACATGCTGAAGTATAAAATATGCGCGCAGTCCTATTCCTCCAGATCGCTGGACACGTACAGCGCCCTGCTGTCGGACGTGGTGCCTTCCATCCCTCCTGAGCTGCTGGGTTCCCTGCTGTACGAGGAGCTGACGGAGCAGAGAGACCGCATGCTGTTCTCTGAAGGAGCCACCGGGGGCGCTCTGGCTTTTGTCCCCTATTCACAGAGCGGCAGTGACTGTCAGCGTGGCTGTCTCCTCTACCCTGGAAACCAGGGACTGGACTGCCTCAACTTCCATAGAGTGGAGCTGCAGCACCACAAAGGAAGTTCTTCCTGTGTGGCCGTCAGCAGCAGTGACCCGTTCAGCTTCCAGCTGAAAGGCCCTGTAAGACAGATCAGCTCCGCCTCCCTGTTAAACGACTGTTGTGTTGCAGTGAGGTCGGATCACCTGTGTGGAGTTTGGAGGTTCAGCGAACGAAATGAACCTCGTCTGCTGCAAGTTGTCAACACCAGAGAGGTCGCAACCTGCATCAACGTCAGtcctCATGTTTTAGGTGAAGTTCTAGTGGCAAGTGAAAGTGGAGCAGCAAACCTGTGGACTGTTGGCAGAGGGATGCAGAAGATTCGGGAAGAAGACAGCAACCTGTACTTCAACGCTAAGTCGTCATGGCGATGGTGCGAGTTCTCCGCCCACCCAAGGGTGATGTTGTACGCAGACAGGACGGGGGTGGAGCTCACAGACATTAGGGTGAGTCCTGTCTCGAATCACACTCTGTTTCGCATCAGCAACACCCCGGAGTGTCGCAGTGGGGAGAGACTTATTCTGTCCAGATATCTGGGAGATGTCCATCCCTTCCAGCACCTCATCACGACTCAGttcTCAGCCTACATCATGGACGAGCGTTTCCCCTGCATGCCCATGCTCAAGTGGGATCACATGATGCAGTCCCCACCCATGTTTTGTCATGCTGTTTGTGGGGCTAAGACCACTAAGGTCCTGCTGGGGTCCCACAGCTCTCAGGAAATCACACTGCTGCAGTACTCGGgaggCAGAGCGGAGGCCTGTTCCACTCACGGTCCTCCTCGGGCACTGCTCAGACCCAGAGACAGTCTGAAACACCTTCCTGTCCAGATCCCTCACCGCATGGACATCGCTACCAGCAGATTGTCCTCACctgctgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgagtgtgagtgacgACA

Function

GO: NA

KEGG:

id description
K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780166.1 True 2016 mRNA 0.53 13 5907359 5919472

Neighbor

gene id symbol gene type direction distance location
LOC120545631 NA coding downstream 659 5900452 ~ 5906700 (-)
ccni ccni,LOC106529109,LOC106925549,LOC106963610 coding downstream 21931 5858973 ~ 5885428 (-)
LOC120545046 LOC101480421 coding downstream 333580 5566039 ~ 5573779 (-)
LOC120545938 LOC101480421,LOC106530361 coding downstream 349383 5532385 ~ 5557976 (-)
pam pam coding downstream 593926 5177157 ~ 5313433 (-)
fech fech coding upstream 378269 6297741 ~ 6322153 (-)
nars1 nars coding upstream 408935 6328407 ~ 6347650 (-)
txnl1 txnl1,LOC102796010 coding upstream 433741 6353213 ~ 6362103 (-)
LOC120545786 rab27b,LOC104935727,LOC103374166,LOC104963949,LOC108228659 coding upstream 1268723 7188195 ~ 7274967 (-)
LOC120544992 NA coding upstream 1376037 7295509 ~ 7297921 (-)
G173231 NA non-coding downstream 17614 5889275 ~ 5889745 (-)
G173228 NA non-coding downstream 20910 5885763 ~ 5886449 (-)
G173192 NA non-coding downstream 58124 5846947 ~ 5849235 (-)
G173191 NA non-coding downstream 64481 5839229 ~ 5842878 (-)
G173165 NA non-coding downstream 225425 5681437 ~ 5681934 (-)
G173263 NA non-coding upstream 151720 6071192 ~ 6074877 (-)
G173290 NA non-coding upstream 297096 6216568 ~ 6217552 (-)
LOC120545015 NA non-coding upstream 299987 6219459 ~ 6221707 (-)
G173336 onecut2 non-coding upstream 350607 6270079 ~ 6270377 (-)
G173324 NA non-coding upstream 350958 6270430 ~ 6284200 (-)
LOC120545230 NA other downstream 506681 5396633 ~ 5400678 (-)
odf2a LOC103374699 other downstream 1010002 4846279 ~ 4897357 (-)
G172920 NA other downstream 1136056 4770817 ~ 4771303 (-)
dpm2 dpm2 other downstream 1347591 4552871 ~ 4559768 (-)
cdk9 cdk9 other downstream 1759546 4139166 ~ 4147813 (-)
LOC120544971 NA other upstream 448835 6368307 ~ 6374489 (-)
LOC120546140 NA other upstream 901340 6820812 ~ 6820866 (-)
G173470 LOC103389048,LOC105418623 other upstream 1233398 7152870 ~ 7160087 (-)
G173727 LOC107687935 other upstream 2438251 8357723 ~ 8358027 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other upstream 2706010 8625482 ~ 8634067 (-)

Expression


Co-expression Network