LOC120545648


Basic Information

Item Value
gene id LOC120545648
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18458512 ~ 18461772 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780187.1
CTCGCCACTCGCGATAACTCGCGTTGGGGCAGCAGCTGGGCGGAAAAGGCGGGAGAAGACTGTGCCGCTTCCGCGTCCGCGCAGAGACACAACACTAGGGCAAAATGGACGATAAGTTAATATTGGCTGTATTTAATCACCCAGAGCTGTACAATGTAACTTTGCCTAATTACCGCTGCACGGAAAGTCGGATAAATGCTTGGAGAAGCATTAGTACCGTGCTGGGTCTCCCATCGGAGGAGtgtaaaagaaaatggaaaaacatgAGAGACAGGTACTTGAAGGAAGTCCGAATGGAGATCAAAAGCAAGAAGCAAGGAGAGATTGTGCAAAGTAGATGGAAATATAGACAACTTATGAACTTTATCGCACCCTTCACTGGATCAAGAAGCGGCGAGGCAGATATCTGCGGCAGCAATGACGATGATCACGACAATCCTGACAACGAATCTGGCAGTGCCGAGGCAGAAACCACATTGTCTGAGGCAGTCAAGACCAAGCAGTCCGTCATGAAGGTCCCTGTGAGTCAACCCGACCTCAAGTCCCAGGTAGCGTTTGTGACCCAGTATCCTTCAATGTCTCAAGATGCACAGCTGGCCCAGCTGGCTGTTCTGGCTAAGATGCCATCGAGCCCACAGATCACCCCCATCAGCAAAACTGGACGGAAACGGCGCCTAATGCAAGAGTCACTTTCACTGTCGTCTTCTCAAAGTACACCATCCCCTACAAAGTGGCTGGTCAAAGACAATGGCACCCCATTTCCCAACAGGCCACGGGATGAGGATGAACTCTTTCTTCTGAGCTTTGTCCCCGCTCTGAAGAGACTTGCTCCACAGAAGAGGTGCGAGACAAAAATAAAGATCCAGCAGGTTATGTATGAAGCAGAGTTCAACGTTGTACAGCCAGGATCTCAAGAGAAACAGCCGGAGCCAGCAACACAGGACTAGGCCAAACTGActatttttatactttattcTGCTTTCTAAAAACCTCTTccacaaaatatttttcttttttacagcaCAAAGTGGTTGAGTCTGAAGTACATCCTTTTTTAATGTGAAATAATTAACTTTGAGGAATAACTAAACATACAACTATTGAGCAAGTTGTTGAATTTTTTTGGTGTTTCTTGATTTGCATGTTTATTAGATGAGTAAGGCTTATGAGAGAATGAAGCCCTAACAGATTTACCCATTAATAGGAAAACAAACGGACTATGATTAACATCTTTATTTACATAGCTTTACTGTCAATAGAGTGAATTCACATTTAGATAGCTGGTAGGTTCAACCAGCCATCTTCATTTCAGTAATAATTCTGTAATCTAcagtattttacatttaattacaGTGATGAAGCAAAAAAGGCATTTTAGAGAGGAACACTTTCATAAATTAATATTTCAACTGCTTACATGCATCaacatatttctttttaatcacATCTAAAATAAAGCGACAATGTCTAACATTGTTTTGATTCCG
>XM_039780188.1
GCGCACCGTGCTAGCGGTAGCAGCCGCAGCTCGCATGCTGTAGGCCGCGCTGCACCGAACGGCACGGTCCGGTGTTCTGCCGCCAGCCGCGCGTCCAACACGGCTCTTGGAGGAGGAAACATGCAGCGTCGCTGTATTTACCGAGCCGCGTGCTTTTTCGTCTCGCTCGTTAACGCCGCGAGCTTCAAATAAACTGAAAGCTTGTTGAAGTCTCGTGGAAGCGTCGGCGGCAGCTCCACCACCTTTACGCGGAGGAGtgtaaaagaaaatggaaaaacatgAGAGACAGGTACTTGAAGGAAGTCCGAATGGAGATCAAAAGCAAGAAGCAAGGAGAGATTGTGCAAAGTAGATGGAAATATAGACAACTTATGAACTTTATCGCACCCTTCACTGGATCAAGAAGCGGCGAGGCAGATATCTGCGGCAGCAATGACGATGATCACGACAATCCTGACAACGAATCTGGCAGTGCCGAGGCAGAAACCACATTGTCTGAGGCAGTCAAGACCAAGCAGTCCGTCATGAAGGTCCCTGTGAGTCAACCCGACCTCAAGTCCCAGGTAGCGTTTGTGACCCAGTATCCTTCAATGTCTCAAGATGCACAGCTGGCCCAGCTGGCTGTTCTGGCTAAGATGCCATCGAGCCCACAGATCACCCCCATCAGCAAAACTGGACGGAAACGGCGCCTAATGCAAGAGTCACTTTCACTGTCGTCTTCTCAAAGTACACCATCCCCTACAAAGTGGCTGGTCAAAGACAATGGCACCCCATTTCCCAACAGGCCACGGGATGAGGATGAACTCTTTCTTCTGAGCTTTGTCCCCGCTCTGAAGAGACTTGCTCCACAGAAGAGGTGCGAGACAAAAATAAAGATCCAGCAGGTTATGTATGAAGCAGAGTTCAACGTTGTACAGCCAGGATCTCAAGAGAAACAGCCGGAGCCAGCAACACAGGACTAGGCCAAACTGActatttttatactttattcTGCTTTCTAAAAACCTCTTccacaaaatatttttcttttttacagcaCAAAGTGGTTGAGTCTGAAGTACATCCTTTTTTAATGTGAAATAATTAACTTTGAGGAATAACTAAACATACAACTATTGAGCAAGTTGTTGAATTTTTTTGGTGTTTCTTGATTTGCATGTTTATTAGATGAGTAAGGCTTATGAGAGAATGAAGCCCTAACAGATTTACCCATTAATAGGAAAACAAACGGACTATGATTAACATCTTTATTTACATAGCTTTACTGTCAATAGAGTGAATTCACATTTAGATAGCTGGTAGGTTCAACCAGCCATCTTCATTTCAGTAATAATTCTGTAATCTAcagtattttacatttaattacaGTGATGAAGCAAAAAAGGCATTTTAGAGAGGAACACTTTCATAAATTAATATTTCAACTGCTTACATGCATCaacatatttctttttaatcacATCTAAAATAAAGCGACAATGTCTAACATTGTTTTGATTCCG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780187.1 False 1487 mRNA 0.43 2 18458512 18461772
XM_039780188.1 True 1502 mRNA 0.44 2 18458951 18461772

Neighbor

gene id symbol gene type direction distance location
setd1ba setd1b coding upstream 37063 18405378 ~ 18421449 (+)
orai1b orai1,LOC103390458 coding upstream 71040 18384808 ~ 18387472 (+)
rnf34b LOC102198247,LOC101472476,LOC102778596,LOC102300128,LOC100691293,LOC108232543 coding upstream 97925 18342719 ~ 18360587 (+)
ggt5b NA coding upstream 188123 18261271 ~ 18270389 (+)
LOC120544962 LOC104923128,LOC100702751,LOC101476754,LOC102201716 coding upstream 258818 18193174 ~ 18199694 (+)
LOC120546057 iscu,LOC100705178,LOC102784710,LOC103373105,LOC104958920,LOC101065972,LOC105915304,LOC101167135 coding downstream 9475 18471247 ~ 18474039 (+)
LOC120546054 susd2 coding downstream 87015 18548787 ~ 18557460 (+)
LOC120546055 LOC103360654,LOC104934677,LOC104958911 coding downstream 96788 18558560 ~ 18560433 (+)
taok3b LOC104958930,LOC103360656 coding downstream 100668 18562440 ~ 18571048 (+)
m17 NA coding downstream 111892 18573664 ~ 18575134 (+)
G175797 NA non-coding upstream 7444 18449802 ~ 18451068 (+)
G175792 NA non-coding upstream 26815 18429684 ~ 18431697 (+)
G175772 NA non-coding upstream 35834 18421529 ~ 18422678 (+)
G175696 NA non-coding upstream 219565 18235236 ~ 18238947 (+)
G175695 LOC103473718,LOC103148770,LOC106925514,LOC101169050,LOC106514486 non-coding upstream 224350 18231033 ~ 18234162 (+)
G175804 rnf185 non-coding downstream 2498 18464270 ~ 18466064 (+)
G175891 NA non-coding downstream 125987 18587759 ~ 18588293 (+)
G175917 NA non-coding downstream 195918 18657690 ~ 18658284 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding downstream 208611 18670383 ~ 18673965 (+)
G175974 NA non-coding downstream 374403 18836175 ~ 18836754 (+)
tmem120b tmem120b,LOC101471304,LOC102195879 other upstream 58066 18391739 ~ 18400446 (+)
lrrc75bb LOC102299816,LOC101473269,LOC102199085,LOC100691028,LOC103366102 other upstream 129687 18295836 ~ 18328825 (+)
antxr1b LOC100694769,LOC102799311,LOC101477777,LOC102295999 other upstream 313062 18124842 ~ 18145450 (+)
G175640 LOC102204295,LOC100701817,LOC103369925,LOC106514495,LOC101480226 other upstream 362989 18067132 ~ 18095523 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other downstream 74859 18536631 ~ 18548141 (+)
cabp7b cabp7,LOC104925332 other downstream 173254 18635026 ~ 18651069 (+)
LOC120545610 NA other downstream 194752 18656524 ~ 18657619 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other downstream 214249 18676021 ~ 18723785 (+)
LOC120545529 ermp1,LOC102800265 other downstream 918478 19380250 ~ 19402379 (+)

Expression


Co-expression Network