arrdc1b (arrdc1)


Basic Information

Item Value
gene id arrdc1b
gene name arrdc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9734455 ~ 9778180 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780201.1
CACTGGTCTCTAAGCCGGGGGGGGGCTCGCGGCAGCAGGTGAGAGCGCAGCGCAGAGCGGCCGGAGTAGCCGAGCGGAAAGCAGGAGCCATGGGAAAGCTACAAGAATTTGATATCACTTTTACCAACAACAAAGTGGTTTACGGCCCTGGAGAGTCCATTAGCGGTACTGTGAAAATACGAACCGCCAACTCGCTGCAGTACAAAGCCATCAAGGTGAACTGTCAGGGCTCATGTGGGATCTCCAACAAAATGAAAGACACCTCGTGGGCTCTGGAGGAGCAGTACTTCAACAGCACGCTGTCTGTTGCTGACAAAGGAACCCTGGCTGCGGGCGAACACAGTTTCCCCTTCCAGTTTCTCATTCCAGTCACTCCCCCGACTTCCTTTGAGGGACCCTTTGGGAAGATTAGTTACCGTGTGAGGGTGGCCATTGACACGCCTCGCTTCTCTAAGGACTACAAAGCCCAGAGGCCCTTCTACATACTCAACCTGCTCAACCTCAATGAGGTGCCTGAAATTGAACTTCCGAGTTACGCTGTGACCACTAAGAAGTTCAGCTACCTCCTGGTGAAGACGGGGACCCTGATGCTGAAGGCTCACAGTGACCTGAGGGGTTACATCCCGGGGCAGGTCATCAAGTTAGCCACTGAGATCCACAACAAGTCTGGGAAGGACACAGGATGTGTGTTGGCCAGTCTCATACAGAAAGTGACCTATAAGACCAAGCGGCCTGTGTTCGACCTGCGGACCATCGCAGAGGTGGAGGGAGCCGGAGTAAAGGCGGGAAAACATGCCGAGTGGAGAGAGCAGATCATcgtccctcctctccctcagtCTGCGCTGGCCGGCTGCAGCCTCATAGACATCGACTACTTTATTCAGGTGTCCCTGAAATCTCCCGACGCGGTCGTCACTTTGCCCATCTACATTGGGAACATCGCTGTGAACTTGTCTCCGTCGAGGGCCATGCCGTCCACTCCAGAGCACGCCATTGCGCCCACAGCGGCAGGCGTGACGCCCAGTGCCCCGCCGGCGGAGGAGGAGCCAGAGGAGGGGCTGTGTGCCGGGGGCGTGGCCAGTGAGGATATTCCAACCAAGAGTCACTCTCAGCAGGATCCCTCGTGTCAGCCTGTCACCATGTCCCCCAGCGCGTTCAGCCACGCGCCCGGCGCAGCCCTTCCTCCCAGCCACAGGCGGCCCGACGCGTCCGCTCCCCTGTTCTGCGTGTCCACCGGGGCCACCATACCTTTCTTCACCGAGGGAGGAAACGCGACTCCTATCCCCACTTCCTGTTCTCTCATCCTCCCTCCAGAGTACAGCAGCTGGGACTACCCTCATGAGCCCCCACCCAGTTACGAGGAAAGCTGCAGTAGCGCCGACTCCAGTTTCAACAGCAGACAGTAGAGAAGAAGCAGGTGATGAAGCATCATGGCCACGCCCACCCACACCTGTTTGCATTCGCCTCTCGACAAATCAGGACAGCGACATGCCTCCACCCCCCAGAAAAACCCCAAAGATTGTTTCTTTGTCCttgaataatttaaaaaaagggatcGTATCTTATATTGaatataagttttttttttttttttttcacccccgTGTCCCATCAGGGTTGGGTCAGACAGAACGGGGGAACATCACTGTGCCTAAAAGGAGTATTTTGGATCCTCATACAGCATTTAGAATATTCAGTGATTGGGCGTGGTTCTTTCATGGGGCGGAGTAAAAtctgtcatgtttttattttatttaaatttttttcaatgACTCTTTGCATCTGTGATGCCTTGAAAATGATTTTGGCCTACTGAAGGCTCATGTTTGACATCGATCAAACGTTGGGCCTTTTTTGTAGTCTTGTTCCAATTGTGCACTTGTTATCGTGGTCCACCGCTGTCTGTCTGCGTCAGCTGTGTCTCAGTTGTCCTCATCGTCAGCAGGGCAGAGCTGTCTTCATGCTGGAGAACGTTTTGCCAGAAAATTGGGGTTGGACTAGTTAAAACCACAGTGTGTAGGATTTTTCCGTCTTTTATAGCATCGCAGATTTATTCCGATGGCTAAAGTCTGTGTTTGAGGAAACCTTAGCCAACCCCAGTGAAAATGACTGAAGTCTGTGTCTGTACTGGCATACATCACTGTCTGCTACCGCGTCTTATTTTATAATAAGACTACAAGTTGGCAGTCAGAAATCGTTAAAATCCTACACATAGGGGGTTTAAAGACAAATCATGTCACAGAAACACCTCTCAGTTGTATAACTCAAAACAAAGGTAGCAAAAAAATACTGtagtttataaaaaataaatccagtcACACTAAAATCTGTATgtttttaaacattgtttttatCGATATGACCAATTggaatatatacttttttttttgtggccaaGATAATTTATGTTGACAAACTGGAATGCATTTTGAAAACGTGTCTCACCTGTGTACCGCCACCGCATGTTGGCTCATGTAGCCAAGAGGTTTTGCCTTGACACCAGTTTTGTATTCAGCAGACCGTTTATATCTGCAGATGAGGCTCCTTTCTCCTGCAGCGGCATACGAGGACTGCGGTACTGACGCGGTCTTTCTCTGCCCTCTTGTGGTCATCACAAGTTTCTCTCTACTCCTCTTGATCCTGGAGCAACACAACCAGCCATGCAAACTGGAACACTACACTGAGGCTCTGCTTCTGTGATGCACCGACTGAGGTCTGCTGTGCTGTGCAAATGTACATCTCGTTTTTTTGAGCAGAACCGACAGATTTGAGGTGTGAGATGCGTGTCGTTGCGAGACGTGATGCAAGTCGTTTAGCGTCATTGTTTCCGTCTGAATGAGATTGTGTGTTGGTTCCTCTCCCGTCTTTTGCCTTAACCTTCTGTTAGTGTTACATTAGTGAGATGAGAATCCTCTGAAACTTCAGGTGGTGCAGAtgataaacatactgtacatgtgcacttttcactttttttttttatttgcatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtggtgtgtgtgtgtgtgtgagagagagagagagagagagatagaactTGGACAAGTTCACATGAGGTCTGTTTTCACTCAAACTCAACAATTTGAAATAGATTTTTGATTCAGCACCTGTGCAGGTAAATGATCTGTTAAAGACATTTCTCTTTGCCTGTGTACAAGGGCTGGGTGATAATTCTACATTTTTACCTGTCGGCATAATCAATGCCATTCAGGAGGACTGTTGTATCAGATTTTGCATACGTCGGTCATATTTTTCTTATCTTGATGACcttaaatatctttatgtatgTGATTAGAATGACTTCAACCATTTCGCCCGGCCCTACTGTGTTTTCAAAGCATTTTTCTGTGGTAAACTAACACCACTGAAAATCTAAAGCACAACTGCTATCCTGAATGTGCGTGTGACTTTTGATGTGCTTGTCTTATTTTACAACATGTAAGTACAATCTCCAAGTCCATTCTGTGAATtgagaatggaaaaaaaaaaaaaaaaatccaagtgCTGATGTTGGCTCCTGACTGCAGATTGTGTTCCCACGTTACCaggattttgtattttattttgtgagaCACATCAGCTCAGAAATTTCCACCGAAATCTGGTTCTACATTATTGTGAATGCATGCCTTAAACAATCTAGATTCCCACCCCCTCATCCAGGAGCTTGTGATGgaccttcttcttctctgtcagGGAGGACATCAGGACCTACTCTCTTCCTGTTTTGTCTCCTGTGGACTGTGCTAAGTGTACTTGATGTATACAAATGTAGCGTTTTAAAAACCGCAAGGACGCTGGACCTGTTGAACTTGTTTTTAGAAAATATGTGCAATTTGTTTTATCTCCAagaatgcagcagcagcagcagcaacaactcCCTGAAGTCATTTCAAACTGCCTTTATCGATCCTGATTCTGTTTAATTCTTTGCCACCAAAAGGTACTATAGCTTTATGAAGCCCCACttgttctgtgtgttgttttgttttttcactttCCCCCCTCACATATTGATGAGTGGTGTctggttttgtatttttctacGTAAACTGTTTACAGGTGCAGTATGCAGATACTAATAGTAGCACCTCAATCAGTCAATGTAATATTTCAACATACAGTGCGAATCTAAGTTGTACAGTacagaataacaataaaaaaatatatgacatGCT

Function

symbol description
arrdc1 Enables several functions, including arrestin family protein binding activity; ubiquitin ligase-substrate adaptor activity; and ubiquitin protein ligase binding activity. Involved in several processes, including cellular protein metabolic process; extracellular vesicle biogenesis; and negative regulation of Notch signaling pathway. Located in cytoplasmic vesicle; extracellular vesicle; and plasma membrane.

NR:

description
arrestin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780201.1 True 4220 mRNA 0.46 8 9734455 9778180

Neighbor

gene id symbol gene type direction distance location
slc31a2 slc31a2 coding downstream 1462 9721694 ~ 9732993 (-)
stxbp1a stxbp1,LOC101480228,LOC106536584 coding downstream 27530 9622425 ~ 9706925 (-)
ssna1 ssna1,LOC102792612 coding downstream 877726 8852787 ~ 8856729 (-)
alad alad,LOC102791750 coding downstream 922361 8795830 ~ 8812094 (-)
LOC120545257 npr2,LOC102310518 coding downstream 950113 8699959 ~ 8784342 (-)
LOC120544929 LOC102775582,LOC102289500,LOC103364605,LOC106529419,LOC102193727,LOC108241375 coding upstream 4017 9782197 ~ 9792340 (-)
mamdc4 NA coding upstream 20904 9799084 ~ 9831228 (-)
phpt1 phpt1,LOC104936327,LOC101477977,LOC106536853,LOC100711007 coding upstream 53120 9831300 ~ 9834777 (-)
LOC120545811 LOC103364603 coding upstream 57633 9835813 ~ 9857844 (-)
zgc:92275 LOC107665231,LOC107754619,LOC106565467 coding upstream 145026 9923206 ~ 9938950 (-)
LOC120545476 NA non-coding downstream 396037 9337767 ~ 9338418 (-)
G173944 NA non-coding downstream 435977 9297725 ~ 9298478 (-)
G173943 NA non-coding downstream 436841 9296393 ~ 9297614 (-)
G173942 NA non-coding downstream 449122 9285076 ~ 9285333 (-)
G173941 NA non-coding downstream 450427 9283823 ~ 9284028 (-)
G174116 NA non-coding upstream 17663 9795843 ~ 9796971 (-)
G174139 NA non-coding upstream 266452 10044632 ~ 10045354 (-)
G174143 NA non-coding upstream 310102 10088282 ~ 10088523 (-)
G174166 NA non-coding upstream 416896 10195076 ~ 10284037 (-)
G174168 NA non-coding upstream 458565 10236745 ~ 10239274 (-)
G173900 NA other downstream 663247 9070162 ~ 9071208 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other downstream 1100388 8625482 ~ 8634067 (-)
G173727 LOC107687935 other downstream 1376428 8357723 ~ 8358027 (-)
G173470 LOC103389048,LOC105418623 other downstream 2574368 7152870 ~ 7160087 (-)
LOC120546140 NA other downstream 2913589 6820812 ~ 6820866 (-)
G174120 NA other upstream 64632 9842812 ~ 9843499 (-)
grin1a grin1a,LOC107600932,LOC103389281,LOC105024190,LOC106513393,LOC100534577,LOC101475684,LOC104936329,LOC102201489,LOC102777117,LOC102302700 other upstream 82821 9861001 ~ 9903007 (-)
gtf3c4 gtf3c4,LOC102793669 other upstream 319071 10097251 ~ 10108289 (-)
adra1ab LOC104947653,LOC100705829 other upstream 600776 10378956 ~ 10395744 (-)
LOC120545042 NA other upstream 1375587 11153767 ~ 11164494 (-)

Expression


Co-expression Network