LOC120545760 (snca,LOC104940963,LOC100691213,LOC101468074,LOC107374679,LOC103142753,LOC102228921)


Basic Information

Item Value
gene id LOC120545760
gene name snca,LOC104940963,LOC100691213,LOC101468074,LOC107374679,LOC103142753,LOC102228921
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21950258 ~ 21962665 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780328.1
gacagacagacagaaagacagacagcgagcatctcttcttttctctcgcATCAGCATCACGGGGTTTAATCGCTCTTTCTCCATCACCGAGGCGTAGGAGGCGTCTGTCAAACCTGTGgagcgtctgtctgtctctttctgtctgtgtccgtctgtctgttcGAAAGACACTACACAGTTGTAGTTTTGGAGACAATAAAACGGGTTTACTGCTCTTTGGGGGGGAATCTCCGCTGTCATCCCGGAAGATTTATCGCATTCTCGCCGTAAAGGAAGTTGAAGCGAACAGctgtgtgtgcgtgttaatTTGGGAGCCAATCAAGCAGCCATGGACGCGTTCATGAAGGGTTTCTCTAAAGCCAGGGATGGGGTCGTGGCGGCGGCGGAGAAAACCAAGCAGGGAGTGACTGGAGCAGCTGAGATGACGAAAGATGGGGTTATGTTTGTCGGTTCCAAAACAAAGGATGGAGTCACAACAGCTGTGTCTGGAGTGTCTCATGTGGGTGGAGCCATGGTTACCGGGGTTACCGCTGTGGCCCACAAAACTGTGGAGGGTGCAGGGAACATTGCCGCTGCCACTGGATTGGTCAAGAAGGATCCTACCAAACAAGGGGATGAAGCCTCAGCAGTACAGGACATGGCAGAGTCACCGGTTGACACCGACCCTGCTGATGCTACAGAGgACGACACCGATGACAACTGATTTAGAGCGTCACAATCAAAGATCAATGATCAATGATCAATGACCGAAACATTCCATGTCGCTCTGCCAAGTCCCGTTGTGCCTCGTTTTGGTCCTTTATGGAGTCTCTGCTcaacgtctgtgtgtgtgtgtgtgtgtgtttctgtttgtgttgttacgtatgtctgtacagtatatgtgtaaATGTTGTAGAGAAAGAGGGTTGATGTTGTGTGAGtgcgtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtctatatgtactTTTTCTGTCAACTGTGTGACTATGTCAATAACTCAAACATGGAAATATACCACTTCAAGCACCTAAGTGTCTCTATATAAATGAACAATTTACAGTGATCTGTTTGAAATGGAATCGTAATGATATTCTCTATTTTTGTCTGTATACTGTCACTGTTTTTTGCGGTGGACTATAAAGTGCTGAGCTAGTTGTGCAttcatattgtattttttatgttatCACTGCTGTAACAAATATGTCATATTGAATGGACTTTTGAAATCCAAGAGCATGTAAAACTACTCAGCTTAACTGCTGTGATATGAATTTATTTGGAGTTCAGTGttaaataaagtgtttaaaaaagtgtt

Function

symbol description
snca Enables several functions, including Hsp70 protein binding activity; cytoskeletal protein binding activity; and metal ion binding activity. Involved in several processes, including negative regulation of transport; positive regulation of transport; and regulation of protein metabolic process. Located in several cellular components, including growth cone; inclusion body; and perinuclear region of cytoplasm. Part of protein-containing complex. Colocalizes with platelet alpha granule membrane. Implicated in Alzheimer's disease; Lewy body dementia; Parkinson's disease; Parkinson's disease 1; and Parkinson's disease 4. Biomarker of several diseases, including Creutzfeldt-Jakob disease; Lewy body dementia; bipolar disorder; neurodegenerative disease (multiple); and vascular dementia.

NR:

description
PREDICTED: alpha-synuclein-like

GO: NA

KEGG:

id description
K04528 SNCA; alpha-synuclein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780328.1 True 1322 mRNA 0.45 6 21950258 21962665

Neighbor

gene id symbol gene type direction distance location
rad23b rad23b coding upstream 88123 21853828 ~ 21862135 (+)
znf462 znf462,LOC103359970 coding upstream 105200 21795637 ~ 21845058 (+)
tmem38b tmem38b coding upstream 208227 21729671 ~ 21742031 (+)
edf1 edf1,LOC106563255 coding upstream 295107 21651855 ~ 21655151 (+)
prrc2b NA coding upstream 303017 21613897 ~ 21647241 (+)
sema4d sema4d coding downstream 50270 22012935 ~ 22054041 (+)
shc3 shc3,LOC102305817 coding downstream 93375 22056040 ~ 22086981 (+)
ctif ctif coding downstream 205713 22168378 ~ 22227884 (+)
rad1 rad1 coding downstream 406502 22369167 ~ 22372791 (+)
dnajc21 dnajc21 coding downstream 414448 22377113 ~ 22384622 (+)
G176644 NA non-coding upstream 294671 21655203 ~ 21655587 (+)
G176565 ak1 non-coding upstream 539799 21401914 ~ 21410459 (+)
G176559 NA non-coding upstream 551255 21397647 ~ 21399003 (+)
G176542 NA non-coding upstream 795403 21151267 ~ 21154855 (+)
G176507 NA non-coding upstream 1012966 20936806 ~ 20937292 (+)
G176696 nop14 non-coding downstream 1431 21964096 ~ 21964825 (+)
G176702 NA non-coding downstream 8483 21971148 ~ 21971498 (+)
G176703 NA non-coding downstream 8973 21971638 ~ 21971985 (+)
G176704 NA non-coding downstream 9444 21972109 ~ 21972443 (+)
G176723 NA non-coding downstream 95022 22057687 ~ 22057895 (+)
G176526 NA other upstream 1003203 20946684 ~ 20947055 (+)
pappaa pappa other upstream 1329472 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 2035578 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 2547879 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 3226473 18676021 ~ 18723785 (+)
G176753 NA other downstream 316215 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 533748 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 569243 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 1035588 22998253 ~ 23008834 (+)
G177094 NA other downstream 1220008 23182673 ~ 23184262 (+)

Expression


Co-expression Network