ssna1 (ssna1,LOC102792612)


Basic Information

Item Value
gene id ssna1
gene name ssna1,LOC102792612
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 8852787 ~ 8856729 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780355.1
ACAAGTAACACGCTATCTTAAGCGGTGCCTAGCCGCGGTTAAAGCTTATAACGTTAGCTAGGCGGACGTCAGCTCAAATCCAACATGACCCAacaagctgctgctctgcagaCTTACAACAATGAACTTGTCAAATGTATTGAGGACCTGTGCTCCAAGCGGGAGGAGTTGAACAGTCAGATCaagcaggaggaagaggagaaggaacGGCTGCAGCACGACATCCGCGTCCTTTCAGAGAAGCTGAGCCGAGTCAACGAGAGCCTGGCGCAAAGACTCGCCGCCCGCGCCACCTTCGACCGCACCATCGCAGAGACCGAGGCTGCATACACTAagATCTTGGAGAGTTCCCAGTCTCTTCTGAGCGTCCTGAAGCAGGAGGCAGGAAACCTGAGTAAAGCCACAGAGCCGCGGAGAAAGGCTCAATAATGCCAACGAAAGGTCACTGAACTCTCGTTTCGACCTCAACCAGCGACCCTCGCCTCTGCACTTTTAGCCGTGTTTGTACTCCACTCTGGACTCATCGGGATAGATTGGATTGATTTATTGTAAGTTTCTTATTCTAATAAATGTGTGTTCTTTTCACTA

Function

symbol description
ssna1 Predicted to be active in centrosome and ciliary basal body. Orthologous to human SSNA1 (SS nuclear autoantigen 1).

NR:

description
Sjoegren syndrome nuclear autoantigen 1

GO: NA

KEGG:

id description
K16780 SSNA1; sjoegren syndrome nuclear autoantigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780355.1 True 588 mRNA 0.51 3 8852787 8856729

Neighbor

gene id symbol gene type direction distance location
alad alad,LOC102791750 coding downstream 40693 8795830 ~ 8812094 (-)
LOC120545257 npr2,LOC102310518 coding downstream 68445 8699959 ~ 8784342 (-)
pmchl NA coding downstream 187331 8664825 ~ 8665456 (-)
tmc2a LOC105921883,LOC107083736 coding downstream 235823 8590269 ~ 8616964 (-)
LOC120546028 NA coding downstream 265978 8576503 ~ 8586809 (-)
stxbp1a stxbp1,LOC101480228,LOC106536584 coding upstream 765696 9622425 ~ 9706925 (-)
slc31a2 slc31a2 coding upstream 864965 9721694 ~ 9732993 (-)
arrdc1b arrdc1 coding upstream 877726 9734455 ~ 9778180 (-)
LOC120544929 LOC102775582,LOC102289500,LOC103364605,LOC106529419,LOC102193727,LOC108241375 coding upstream 925468 9782197 ~ 9792340 (-)
mamdc4 NA coding upstream 942355 9799084 ~ 9831228 (-)
G173848 NA non-coding downstream 160042 8692385 ~ 8692745 (-)
G173840 NA non-coding downstream 216533 8635736 ~ 8636254 (-)
G173778 LOC103353408 non-coding downstream 304775 8538120 ~ 8548012 (-)
G173768 LOC103353410 non-coding downstream 368538 8483879 ~ 8484249 (-)
G173765 NA non-coding downstream 373540 8478356 ~ 8479247 (-)
G173865 NA non-coding upstream 19952 8876681 ~ 8877345 (-)
G173874 NA non-coding upstream 42624 8899353 ~ 8903114 (-)
G173895 NA non-coding upstream 78418 8935147 ~ 8935592 (-)
G173906 NA non-coding upstream 247223 9103952 ~ 9104183 (-)
G173907 NA non-coding upstream 256635 9113364 ~ 9113563 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other downstream 218720 8625482 ~ 8634067 (-)
G173727 LOC107687935 other downstream 494760 8357723 ~ 8358027 (-)
G173470 LOC103389048,LOC105418623 other downstream 1692700 7152870 ~ 7160087 (-)
LOC120546140 NA other downstream 2031921 6820812 ~ 6820866 (-)
LOC120544971 NA other downstream 2478298 6368307 ~ 6374489 (-)
G173900 NA other upstream 213433 9070162 ~ 9071208 (-)
G174120 NA other upstream 986083 9842812 ~ 9843499 (-)
grin1a grin1a,LOC107600932,LOC103389281,LOC105024190,LOC106513393,LOC100534577,LOC101475684,LOC104936329,LOC102201489,LOC102777117,LOC102302700 other upstream 1004272 9861001 ~ 9903007 (-)
gtf3c4 gtf3c4,LOC102793669 other upstream 1240522 10097251 ~ 10108289 (-)
adra1ab LOC104947653,LOC100705829 other upstream 1522227 10378956 ~ 10395744 (-)

Expression


Co-expression Network