derl2 (derl2)



Basic Information


Item Value
gene id derl2
gene name derl2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5100579 ~ 5125437 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039780425.1
ACACCCGTTGCCTTTTGGAATGACGTGTCAAGAAAGTGCCGGAAGCTTTCAGTCTGTCCAAAATGGCTTACCAGACACTACAACAGGAGTACTTACAGATTCCTGCTGTTACCAGGGCATATACAACCGCCTGTGTACTCACAACTGCTGCAGTGCAACTAGAGATCATCACACCATTTCAGCTATACTTCAATCCGGATTTGATTCTAAAGAATTACCAGGTATGGCGACTAATAACCAACTTCCTGTTTTTTGGTCCAGTTGGCTTCAATTTCCTGTTCAATATGATTTTTCTGTACAGATACTGTCGTATGCTAGAGGAGGGCTCTTTCAGGGGACGCACAGCTGACTTTGTCTTCATGTTCCTCTTTGGTGGACTTCTGATGACTATATTTGGCACTTTTGTGAGTCTGGTGTTCCTGGGCCAAGCCTTCACTATCATGCTGGTGTACGTGTGGAGTCGGCGAAACCCACACGTCCGCATGAATTTCTTTGGCCTGCTGAATTTCCAGGCACCCTTTCTTCCTTGGGTGCTGATGGGATTCTCACTTCTGCTGGGCAACTCCATCATTGTGGATCTTTTAGGTATTGCTGTTGGTCATGTGTATTTCTTTCTGGAGGATGTTTTTCCCAACCAGCCAGGGGGTGGAAGGTGGCTCAAGACCCCATCTATcatAAAGATGCTGTTTGACACACCAGAGGAAGATGCCAACTACAACCCCCTTCCTGAGGAGCGCCCAGGAGGGTTTGCCTGGGGAGAGGGACAGCGCCTTGGAGGTTAAATATGACCCCAGATCGTCCCTGATCGCCAGGTCAATTCCAAGGACAATTCCTCTAGAGAGATGAAGGGGACAAACATGGTCTGGTTATGACTTGTCTGTTTAGTTCGGGATGAAGAATGCCAAACAACCAGAGCTGGTTTGGAGATAACAGTTGTTGCTCACATCATCCCCAGAAACTCTTCTTGATGCAAAATCAATGCTCTAAGACTATTTGAGAGAGCACAAGCTTCGGATGGAATTCTGGATGGTGAGCTTTTGGTGCTCGGTGATGTTTGTCttcatcttaaaaaataaaaatctattgATAAAAAcgtgaaagagacaaaaatgaCAGCAGTGAAATAACTAAATGAATTTATTCAAAtgagtgcatttttttttttcctcatttcactttaaaaattaataaatgtgTGTGGCAAATGATGCTTTGGTTTTATCTCTTTGAACTGTAGTAGTACTGCTTGAAACCAAAGACGTCTCAACAAATTAGATTAATTGATTCATACAAATTACGTTAGGGTCAGTAGAAAGGATCCTGTAACTTCGTTCTCTGTACACAGCAGGCCATTGTAGTATACAAATATCAAGATGTGTACTATGTCCTCAACTTCAGCTTTTTATCCACCTTCAGTTAGGTTAAGTTTTCACAGCTGTACTTTCTATCTAATTTAATACAAACAGCCTTGTATCAGATACATGTGAGTcttttatattatatgtatgtgACAATGCTTCTGGCTTAATAGATTTTGTAcacatttagaattttttttatgtgaccATGTGATCCGATTTACTGGCCCAGCAAATGGATTATAAATCGTGGTAATGTTTGGCATGTTTGTTGCTCTTGAGGAGGAATAAAAAAGTTATAAGATGTGACCCATATGTCAAATTAAGAGTAGGATTGAAAAACTTGTTGGATTATGCTTGCACTGGATCAATAAAACACATACCAGATATGCGCATGTATTGGCAAACACAACCTCACAAACACTTGACCTCCATGCAATATTTCAGCCTTCAAGGTCGAAAACTATGGCCACCAAAAgggtggggatttttttttttgacagtgaGCTATAGAGCTGCTTAATCGCAGCTAAAATGTATGATCATCTTGCAACACCATGGGCTCAGACTCAGTACCTTGGACGCCATAGGCTGTTTCTGATCTCAGGTAACTATTATTTGGGTGATGTAAAACAGTAATTTCAGAAAATTATGATAATTTGTGTACTTGGTTAAGACAATATAGAGATGTCTGCAATTTATTTTCACAAGGATCAATAAATGCTAAACTGATATTTAAA

Function


symbol description
derl2 Predicted to enable misfolded protein binding activity and ubiquitin-specific protease binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human DERL2 (derlin 2).

NR:

description
PREDICTED: derlin-2

GO: NA

KEGG:

id description
K13989 DERL2_3; Derlin-2/3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039780425.1 True 2098 mRNA 0.40 7 5100579 5125437

Neighbor


gene id symbol gene type direction distance location
LOC120545498 smarcb1b,LOC104928041,LOC103358289,LOC106535110,LOC100704669,LOC101070741 coding downstream 515 5043560 ~ 5100064 (-)
ppp6c ppp6c,LOC102313764,LOC102783418,LOC100701794,LOC104928043,LOC103372694,LOC101475652,LOC108228845 coding downstream 89269 5002320 ~ 5011310 (-)
scai scai coding downstream 102622 4909583 ~ 4997957 (-)
sptan1 sptan1 coding downstream 268408 4771749 ~ 4832171 (-)
pkn3 LOC103374969 coding downstream 368266 4677906 ~ 4732313 (-)
pam pam coding upstream 51720 5177157 ~ 5313433 (-)
LOC120545938 LOC101480421,LOC106530361 coding upstream 406948 5532385 ~ 5557976 (-)
LOC120545046 LOC101480421 coding upstream 440602 5566039 ~ 5573779 (-)
ccni ccni,LOC106529109,LOC106925549,LOC106963610 coding upstream 733536 5858973 ~ 5885428 (-)
LOC120545631 NA coding upstream 775015 5900452 ~ 5906700 (-)
G172952 NA non-coding downstream 62456 5034847 ~ 5038123 (-)
G172950 NA non-coding downstream 83372 5017007 ~ 5017207 (-)
G172948 NA non-coding downstream 86867 5013453 ~ 5013712 (-)
G172944 NA non-coding downstream 139791 4954205 ~ 4960788 (-)
G172929 NA non-coding downstream 191999 4905888 ~ 4908580 (-)
G172981 NA non-coding upstream 4382 5129819 ~ 5130123 (-)
G172982 NA non-coding upstream 8893 5134330 ~ 5134613 (-)
G173050 NA non-coding upstream 228265 5353702 ~ 5354063 (-)
G173055 NA non-coding upstream 236158 5361595 ~ 5362226 (-)
G173093 NA non-coding upstream 253440 5378877 ~ 5380737 (-)
odf2a LOC103374699 other downstream 203222 4846279 ~ 4897357 (-)
G172920 NA other downstream 329276 4770817 ~ 4771303 (-)
dpm2 dpm2 other downstream 540811 4552871 ~ 4559768 (-)
cdk9 cdk9 other downstream 952766 4139166 ~ 4147813 (-)
G172620 NA other downstream 1156748 3886588 ~ 3943831 (-)
LOC120545230 NA other upstream 271196 5396633 ~ 5400678 (-)
LOC120544971 NA other upstream 1242870 6368307 ~ 6374489 (-)
LOC120546140 NA other upstream 1695375 6820812 ~ 6820866 (-)
G173470 LOC103389048,LOC105418623 other upstream 2027433 7152870 ~ 7160087 (-)
G173727 LOC107687935 other upstream 3232286 8357723 ~ 8358027 (-)

Expression



Co-expression Network