lmnb1 (lmnb1)


Basic Information

Item Value
gene id lmnb1
gene name lmnb1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 966999 ~ 987881 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780445.1
AGCCGCCATATTAGAAGCCAACCCCTCTTTCGTTCTGGTGAGAAAAGCCACTTGGAGGCTAGTTTTCGGAGCTGCTGGTTGTTTATGTTGTTGAGCGTTTAACTAGAAATCGTTAAACCTGCACTACTCGTATCTTGTTTTGGTCTGGTTAGTGTCTTCCATACGGGTCATTTAGTCTTCTACAATGGCTACCGCGGCTGCAACTCCGACCGGGCAGAGAAGCACGTGCGGCGGCGGCACTCCGCTGAGTCCGACCAGGATCAGCAGACTGCAGGAGAAACAACAGCTCAGGGACCTCAACGACCGCCTGGCCGTTTACATCGACAAAGTCCGTAGTTTGGAGTCTGAAAACAGCGTACTCCACCTTCAAATTAACGAGAGGGAAGATATAAGGAGCCGGGAGGTGAGCGGGCTGAAAGCCCTGTACGAGACGGAGCTAGCCGACGCCAGAAAGTGTCTGGATGAGTCGTCCAAGGAGCGGGCCTGGCTGCAGATCGAGCTGGGGAAGATCACATCCGAGCATGAGCAGCTTCTACAGAACTACAACAAGAAGGACTCTGAGGCAGCCAGCGCCCAGGCCAGGCTGAAGGACTTGGAGGCTCAGCTGAACTCTAAAGAGGCCCTGCTGGCTACAGCGCTGTCTGAGAACGGAGGCCTGGGGGCCACACTGGCCGACCTGCGAGAACAGCTGCAGGAGaTGGATACAGGTCTCGCTCAGGCCAAGAAGCAACTTGGAGACGAGATGCTGCAGCGCGTCGACTTGGAAAACCGCTGCCAGAGTATGACAGAGGAAATGATCTTCCGCAAGAGCATGCAAGAGGAGGAAGTAAAGGAGGCGCGGCAGCGCTACGAGGCGCGGCTGGTGGAGGTGGACTCTGGGCGGAAGGAGGAGTACGAATATAAACTGACCCAGGCCCTGACTGACATGAGAGCTCAGAACGAAGAGCAGATCAAGATGTACAAGGACAACATGGAGAGCACCTACGTGGCCAAACTGGACGACCTGCGTCGGCTGTCTGAGATGAACGGAGCATCAGCCAACATGAGCCGAGAGGAGCTCCGAGAGTCCAGCCTGAGGATCGAGAGCCTCACCGCCCAGATGGCAGCCATGCAGAAGGAGACTCGTGGTTGGCGCGACCGTATCGTGGAGCTGGAGGACACCTTGGCTCAGGAGAAAGACCGGAGCCGCAAGCTGCTGGCAGACAAAGACCGCGAGGTCCGCGAGGTCCAGGCCAGGATGCAGCAACAGCTAAATGACTACGAACAGCTGCTGGATGTCAAACTGGCACTGGACATGGAGATCAACGCCTACCGCAAACTcctggagggagaggaagagaggtgggggagggggaggcggGGGGGTGGGGCGGCCGGCGGCGCCccgcccccgccccccccccccccgccccccccccggCCCCCGCGCCCGCCCGGctgccttgtttttttttctctccacaaCACTGGAGAGGAGGACCAGGCAATGGTTGGTTATGAGATGATTAAGACCATTGGAAATGCGACGGCTACCTACAAGTTCACACCCAAATATGTCCTGAAGGCTCGCCAGAAAGTCACGGTTTGGGCGTCTGATGCTGGTGTGAGCTCCAAACCTCCCACAGACCTGCTGTGGAAGAACCAGTCGTCCTGGGGATCAGGGCTGGACGTGCATGTGGTGCTGACCAACCCTCAGGGAGAGgAGGTGGCAAAGAGAACCACAACATACAACACGGCACTGGAAGAGCAGGATGAGGAAGATGATAACGGAGTGGAGGCCAGTGAGGAAGCCCTCTTCAACCTGCAGGAGGACCGTGGCACGGCCAAGAGAGGCTGCTCCATCATGTGATCCCTCTGCACCaaccagccgctccgctgccaaCTCCAATACTACAACTATTTTTCTATCTTTTGTAGTGTATTTCCATACAAAGAATGGTTTACTTTCTCATAAAAATGCAAAGCTTGTTAGATTTATTTTCATCTGAAAAAGcatggtgctgaaacaatttgtattttgtagatcagaaaccttttttattttataaaaacatgcaACAAGTAGCTAAACTCGGACCGACTGTGTCTTTTAAGAATTGAGTAATGTGCtgtgtcattttaaaattataattttgttattttcttttatattttatctTGTAATTTTATTGATGCTATATTTTAAGCTACAAGAGGAGCCGCAGGATTAGGTCAGGGGCTGGTTTAGATCAGTTTTGCTCAAAATCTActgtattatttaaaaaataaaaaaaaaatatatatataaataaaaaaaaaagactgaagaAATAGGCACTGAAAGGACAAGTACACTAAATAGAAGCTGGGCAGTGAGAGGAGTTGTGAAGGAGTGTGGACCTGGACAAGATGTCAGAATTACATAATATGGAACCTCTGTTTAATagcattctttagaaaaaaagaaatactgtgATTGTTTGATTGTATTCATAAAGAAGTCAGAGGACATTTGAAGTTTGTTAGCAGTTGTTGACTTCCTTTAAAGCCCCTGTGTGTAAGATTTGAAACTGTGGCATTAGCGACTCCTCGTGGTagaatgaaaggaaaaaaagatgtgACCTGGGGACAACAAATGGACTGAAAGTAGCTGGCACCAGTCTTCACAGGGGGGGGGGCGGCTCTAATATCAAATCTGACCGTTTCTCTCCGCTGACTTTGAATGAGCATTGCACCACTAATTGAGAAGTGTTGATTGTATTCTTAACTTTTGATATTTGAAGTGTTTGAAGTACTTTTTGTGTTAGTCTGTTAATATGCATGCTGTGGCTGAATCATAGTTAAATGATTAAATATGTTTTCTTGTA

Function

symbol description
lmnb1 Predicted to be located in intermediate filament. Human ortholog(s) of this gene implicated in adult-onset autosomal dominant demyelinating leukodystrophy and primary autosomal recessive microcephaly. Orthologous to human LMNB1 (lamin B1).

NR:

description
lamin-B1

GO: NA

KEGG:

id description
K07611 LMNB; lamin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780445.1 True 2846 mRNA 0.50 11 966999 987881

Neighbor

gene id symbol gene type direction distance location
slc27a6 slc27a6 coding downstream 15793 883869 ~ 951206 (-)
slc12a2 NA coding downstream 120022 752412 ~ 846977 (-)
crb2a NA coding downstream 307279 624960 ~ 659720 (-)
LOC120545215 NA coding downstream 345262 595893 ~ 621737 (-)
nek6 LOC102297357,LOC102792581,LOC100704402,LOC104936759,LOC101471322 coding downstream 402217 533379 ~ 564782 (-)
LOC120545116 LOC103364476 coding upstream 24263 1012144 ~ 1033929 (-)
LOC120544936 LOC107748254 coding upstream 186647 1174528 ~ 1183903 (-)
syk syk coding upstream 404883 1392764 ~ 1423159 (-)
reep5 reep5,LOC105917055,LOC107098485,LOC103152299 coding upstream 518673 1506554 ~ 1522474 (-)
nrg1 NA coding upstream 667467 1655348 ~ 1715953 (-)
G171795 NA non-coding downstream 75622 891160 ~ 891377 (-)
G171794 NA non-coding downstream 76835 889921 ~ 890164 (-)
G171793 NA non-coding downstream 81346 885452 ~ 885653 (-)
G171792 NA non-coding downstream 86210 880578 ~ 880789 (-)
LOC120545599 fbxw2 non-coding downstream 221587 672472 ~ 745412 (-)
G171839 NA non-coding upstream 20950 1008831 ~ 1009427 (-)
G171846 NA non-coding upstream 48950 1036831 ~ 1037526 (-)
G171848 NA non-coding upstream 50458 1038339 ~ 1038810 (-)
G171886 NA non-coding upstream 196292 1184173 ~ 1193912 (-)
LOC120545753 NA non-coding upstream 216350 1204231 ~ 1207353 (-)
prrc1 prrc1 other upstream 6556 994437 ~ 1008188 (-)
megf10 megf10 other upstream 52917 1040798 ~ 1146587 (-)
G171868 NA other upstream 182322 1170203 ~ 1170789 (-)
G172032 NA other upstream 608635 1596516 ~ 1602156 (-)
G172311 NA other upstream 1996941 2984822 ~ 2985260 (-)

Expression


Co-expression Network