LOC120545833


Basic Information

Item Value
gene id LOC120545833
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2179488 ~ 2252955 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780448.1
GGGCTTGCGTTGTTGGCGGCACCATTGCGGACGGAACCGAACGCAGGCGAAATACACGCGGAACCTTTCAATTGAACGGAGGACATCCCACTAACCTGACAGGATGCTTTTCGTTTGAGAGCACTGCCGAAGCTCTTCACCGTTCAAGCAGCCGTGTTGGCCATCCTCTGACCCTCTTCAGATTGAGTCCAAGCCAAAAATTTATGTTCCACACAGTCTGtGCATCATGTCGAACGCTGGTACGGCATCACAGAAACCTGCCAGGAACACACCGCCACGTGGTTCCAAGTCCAGAGGCCTCAAAGAAATCCACATAGATGAAGAAGTCAAGATAGCTGTGAACCTCTCCCTGGAGAGGTTTCGCTACAGTGACCAGAAAGAGATGGAGTTTCCCTCCTCCCTGTCCAGCACTGAGAGGGCTTTCATTCATCGAATGGCACAGTCCCTGGGTTACATTTCGAAGAGCAAAGGGAAAGGACCAAATCGCTCCCTCACCATCAGGAAGAAGAACGGTTCAGAGAAACCTCGGCCCACCATGCCCCTCACACTCTCCCAAAATTCCTTGTATTTCATCCGCAGCCTACTTCAGAGGTTTCCCATCAGCAACAAGGAACGCATCGACATGCAGCCCAGCAACAAAAGTGGCATGTCTGTGGCTTCAGAACCTGACAGCAGTTGTGACAGGACCAGGGCAAGCGGTCGCCTTAACAACGGCATACCCATGGTGCCTCGGAGGAGGAGTCCATCGGAACTGGACAGTTTTCGACGATCCCTGCCTGTGCATGAGCGCCAGAAGGAGATCATTCAGCTCATCAGAGAAAACAAAGTGGTGTTGGTGATGGGAGAAACCGGctctggaaaaacaacacagATCCCACAGTTCCTGCTGGATGAGTGCAGCAGGAATGGAGAGCCCTGCAGGATCTTCTGCACTCAGCCCAGACGCCTGGCTGCCATCGCTGTGGCTGAGAGAGTGGCAGCTGAGAGAGGGGAGAGTGTTGGCCAGACTGTTGGTTATCACATCAGACTAGAGAGCAGGGTCTCCCCCAAGACGCTGCTGACCTTTTGCACCAGTGGAGTGTTCCTCAGGACGTTGATGGCTGGAGACGCCAGCCTGACAACTGTCACACATGTCATTGTGGACGAGGTGCATGAGCGTGACGGTCTGACTGACTTCCTGCTCACAAAGATGCGGGAGGTGCTTCAGAAGATCCCCACATTAAAACTGATCCTCTCCAGTGCAGCGCTGGATATAGACCTGTTCCTTCAGTACTTTGGCTCCTGCCCTGTTATCCACCTCAAAGGAAGACAGTTTGAAGTGAGGGAACTCTTTCTGGAGGACGTTCTGAGGCTGACGGGCTTTAACAACAAGGACTTGAGGAAATACAaggaagagacacagagaaAGGAGAAGAAGCAGAAACGTTTGATGGAGTGGTGTGAGGCGGTGGAGAACGGTTCTGTTGAGGagacacagaggacagaggggtCTGCCCTAGGCTTGCTCCAGGACAGCAGCTACCTGGACGGAGGGTACAACACCTCTAACAAGCCgCCTGACAATGATGCAGAACAGCTGGAGCCGTGGCTGCAGAAGGAGATGGACTCTTGTATTTCCAACGTTTTCCTCAATGAAGACCAGGATGCTTTCATTCAACTCTTCAACCTAATCCTCTATGAAAATGTTAACGTGGACTACAGGCACAGTGACACAGGGACTTCTCCTCTGATGGCGGCAGCAGGTCGAGGGTTCCTCACACAGATGGAGCAGCTGCTCAACATGGGGGCAGACATCAACTTGAAGGCATCCAATGGCTGGACAGCCTTGGACTTTGCCAAACACTTCCAGCAGATAGATGCCATGGATCTCCTCAAATCTTCCATTCCTTTGGGGGAGGTGAGCAGCCTGGGTGAGTCCACTCTGGTGCAGTGTGGCAATGCTGAGATGAGCACCCCCGAAGAGCAGGAGCTGCTCAAACTGTACCACCACAGCTTTGATGATGAGTGGGTGGACCTGGACCTCATCATGGATCTGCTGCACAACATCTGCTCCACCACCAGTGATGGTGCTGTACTGATTTTTCTTCCTGGATACGATGACATAGTGGCACTCAGGGGTCGCATCCTGTATGACGATAAGAGATTCTCCAACCACTCTGACAGGTACCAGGTGTTCACTCTACATTCAGACATGCAGACTCTGGATCAGAAGAAAGCCATGAAGACCTCTCCCCCTGGTATCAGGAAGATAATTCTTTCTACTAACATTGCTGAGACAAGCATCACCATCAACGACGTGATCTTTGTCATTGATTCAGGAAAGGTCAAAGAGAAGTCCTTTGACACCCTCAGTCATGTGTCCATGTTAAAGACTGTTTGGATCTCAAAAGCCAGCGCTCTGCAAAGGAAGGGAAGAGCTGGGCGCTGCAGACCAGGGATTTGCTTCCACCTCTTCAGTCGTCTCAGGTTCAGCAACATGCTGGAGTTCCAGGTTCCACAGCTGCTGCGGATGCCactgcagGAACTGTGTCTGCAGACCAAACTGCTGGCCCCCTCCTCCTGTCCAGTAGCGGAGTTCTTGTCCAAAGCTCCACAGCCTCCTGCTGCACATGCCATCAGGAACGCTGTGCAGATGCTAAAGACAATAGATGCTATGGACCAGAATGAAGACCTGACTGATCTGGGCTACCACCTGGCAGATCTGCCTGTGGAGCCCCACTTGGGCAAGATGGTGCTGTGCGCTGTGGTGCTCAAGTGTCTGGACCCCATTCTAACCATTGCCTGTACTCTGGCCTATCGGGACCCCTTCATCCTTCCTGCCCAGGGATCTCAGAAAAGAGCTGCTCTACACTGCCGCACACGTTTCACTTCCAACACCTTCAGCGACCACATGGCCCTGCTGAGAGCCTTCCAGGCATGGCAGAAGGCCCGCAGTGACGGCTGGGAGAGATCCTTCTGTGAGAAGAACTTCCTGTCCCAGGCCACCATGGACATGATACTTGGCATGAGGACACAGCTGCTGGGACAGCTCCGTGCCATTGGTCAGTTCCactatattttcttttatatcctacacAACAGCCCAGCCAAATCGGCCCAGGCCCTTCCCACAGACTGGCTGATCTATGATGAGATGAGCCGAGGCCACAGGATGGCCAGTGTTCGCTGTTGCTCCTTGACGACTCCCGTCACTGTGGCCATATTTGGAGGGTGTGCCAAACTACCCAGCTCTGCCCTGCAGGAACCTGCTGTACAGAGAGCTACTGACAGTCTGGTTGACGTCAGTGACAGTGACACAGAGGACCTAGCCGAGATGAAGATTGATGACTGGCTCCTCTTCCAATTGGACAGAGAGGCTGCAGGACTGGTGTTTGAACTGAGGCAGAAGTGGCAGAATTTGTTCATCAAGAGGATCCGTTGTCCGTCAAAGCCCTGGTCTCAACAAGACGAGGCCATTATCCGGACTCTGGTGTCTGTGCTTGCAGCAGAGGAGCAGGGAGCCGGCCTGCAGCAGCCCACAGGGATTGGCCAGCGGCCCCGGCCCATGACATCAGAGGACGGGCCCCAGTCTTCTGGAAAGAACTCCAGGCACAGTCCCCAACCCCCCACCAACACCACCAATGACAAGTCTTGTAGGATGCCAGCAACCTCAAGCTTGCTACAGATGAAAGCCCAAAGCAGAGAAGAGGCCTCACTACCCATAAATCAGCTCTCTGATGACCTGCACTCCTCCAGTAATTCTTCCTGCTCTGTGACCTTGGACAGTCCTTATGACAGCCCCCGTCCTTCCTCCGCAGGAAAGGTGCAATTATTGTGTGATCTCGCGAGCATCCAGCTGCCGCGCAAGATCTCAAAGCCAATGTCTCCTGAGCTGGTCTTTCCTTCAGTGCGGTACTTCATCATGAAGAGCAGCAATGTCAGGAACATAGAGATTTCTCAACAGAAAGGGATCTGGTCCACCACACCGAGCAACGAGACCAAACTCACCAAGGCCTTCCTGGAGAATAACCTCATCATCCTCATCTTCTCTGTTCAGGGCTCCGGACACTTCCAGGGCTATGCTCGCATGACATCAATCATCAGTCAGGAGAGCTGCCAGGACTGGGGCTTCATGGGACTAGGAGGGGTTTTCAGTGTAGAGTGGATCCACAAGGACAGTCTTCCCTTCCAGTGCACTCAACACATCGTCAACCCATGGAACGACAACAAGAAGGTCCAGATCAGCAGGGACGGACAGGAGTTGGAGCCCCAAGCAGGCAGCCAGCTGTTGTTACTGTGGGAGAGAAACTCAGGGAATCAAGTTCAATAAGAGGTAGCAGCGGAACACCCCTCTGCACCATGTTTTGTTCTTCCTCGACCTAAATCTGACTCAAACTACATGCATCCATTTTGTATTGATAGAAACATGTATATTTTTTATCAGATCTATTAGATATTACATCACTTTTATTTTGCCTGCAACAGTAAAAGGACTGCAGTACCAGTTGAGGCAAGATGACAGGACAATGGAAGGACTGATTCATTTGAAAGTTCAGCTGTTGCCGtctcctgtttgtgtgttttgtctatttaaTAAGTATGTTCTCTTTCAGTTTTTATTCTTGTGTTCGAAATGGTACTCATGTTCTTATCAAACACTATGTTCACGATAACATGTCGCTGGCTCTGTGGATGTTCtaaagaggatttttttttaaattctgacATTAATTACAATGGATCAAATGGTTGTATCACTAATTTGATTTGATAAATACAGAAGCTATTACAGTTTGTTCAGATTGTTGTAATGATGTCCACTTAGTTTTTATGGTAATATTTCGAGAGACTGACATATATGTACACTATTTACAACACATAAACAATGCTTCTCTGCACATCCGGAAAGAACGTCTTAAGATTGTGTCTTAGAATAGTTGATGTTCTGTTTTTACGCTTCGCTCGGAGGATGTTGGAGTGCCTCAGAATtcggggtggtacggttcacaaaacccacggttcggtccGTATCatggttttagggtcacggttttcggttcagtacggtttcttattttttctttaacactccagaatatacttcagcatatagc

Function

GO: NA

KEGG:

id description
K20099 YTHDC2; ATP-dependent RNA helicase YTHDC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780448.1 True 5093 mRNA 0.51 32 2179488 2252955

Neighbor

gene id symbol gene type direction distance location
hmgcs1 hmgcs1,LOC107394923,LOC105917111,LOC102790295 coding downstream 20437 2145367 ~ 2159051 (-)
tln1 tln1,LOC100711808 coding downstream 106382 1948903 ~ 2073106 (-)
tpm2 tpm2,LOC106571564,LOC107394912,LOC103389160,LOC108276716,LOC108427282,LOC107737084,LOC108242564,LOC103044350,LOC107670037,LOC107102752,LOC102218310,LOC107572193 coding downstream 235978 1887537 ~ 1943510 (-)
il6st NA coding downstream 315500 1820764 ~ 1863988 (-)
LOC120546089 NA coding downstream 318627 1858046 ~ 1860861 (-)
dcp2 dcp2 coding upstream 942 2253897 ~ 2279811 (-)
dcc dcc,LOC102787302 coding upstream 216220 2469175 ~ 2807464 (-)
mbd2 mbd2,LOC100708236,LOC103373628 coding upstream 915671 3168626 ~ 3246890 (-)
LOC120545955 NA coding upstream 1024594 3277549 ~ 3281952 (-)
june LOC100707786,LOC102781123,LOC101463670,LOC102205300,LOC105936581 coding upstream 1210947 3463902 ~ 3475242 (-)
G172180 NA non-coding downstream 82324 2090423 ~ 2097164 (-)
G172151 NA non-coding downstream 89509 2089713 ~ 2089979 (-)
G172150 NA non-coding downstream 96246 2082808 ~ 2083242 (-)
G172111 NA non-coding downstream 232583 1946644 ~ 1946905 (-)
G172053 NA non-coding downstream 438058 1741024 ~ 1741430 (-)
G172231 NA non-coding upstream 76730 2329685 ~ 2329970 (-)
G172235 NA non-coding upstream 88671 2341626 ~ 2342031 (-)
LOC120544955 NA non-coding upstream 152820 2405775 ~ 2406868 (-)
G172283 NA non-coding upstream 396503 2649458 ~ 2729174 (-)
LOC120545025 NA non-coding upstream 556019 2808974 ~ 2809530 (-)
G172032 NA other downstream 577332 1596516 ~ 1602156 (-)
G171868 NA other downstream 1008699 1170203 ~ 1170789 (-)
megf10 megf10 other downstream 1032901 1040798 ~ 1146587 (-)
prrc1 prrc1 other downstream 1171300 994437 ~ 1008188 (-)
G172311 NA other upstream 731867 2984822 ~ 2985260 (-)
G172620 NA other upstream 1633633 3886588 ~ 3943831 (-)
cdk9 cdk9 other upstream 1886211 4139166 ~ 4147813 (-)
dpm2 dpm2 other upstream 2299916 4552871 ~ 4559768 (-)
G172920 NA other upstream 2517862 4770817 ~ 4771303 (-)

Expression


Co-expression Network