csgalnact1a (LOC102302787)


Basic Information

Item Value
gene id csgalnact1a
gene name LOC102302787
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23229837 ~ 23259542 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780452.1
ACCCGCTCATGCACTCGCATGTGTCGGTTGCAGACCGGTGGAGGGCTGCCGGGACGGGACAGCAGAACCGGGACAAAAACAAAGCCTCCACGCAGGATGGACTGCTGGAACTAGCTAGCGGAAAACAACATGGGGAAACCACCGCTCACCACAGAGGATTGGCTTTCTCATGAAACATAGCATTTTCCGCCACACTGCTTCATCCGGGCTGATGCGAAAAGGACATTATGAACTGACTGAGGGAGTCAGCGAACAGATGAGTCACATATGAGTGATAGCTGATGTAACATCGTTTGTGCCTGAGTCTTTTTGCTGACCATGGAGCAAATTGGAGCAACAGAAagggaaaaagtgttttttctcATACGTTCACCCTGCCATTGACAAAACAAATTACAGTCTCAGGCAGTGGAGAGGCGATGACCTAATTCAGATGAAATGACCTCATACTGATAAGTAGCTGGCCTCCTCACTGGGTGATGGAACATAATCACAAATGGACTCTTATCATCAAGGCTGGAGTGTGTGAGGTTACATGATATTtccgtgtgtgtctttgtgtgtgtgtatgtttaacgCAGAGGAGTGAGTTTTGATGCTACATGCAGCAATGTTGCGGCGTGGACTGCTAGCCTGGGTCTCCCGTGTTGGAGGCGTGCTGGTGCTCCTCTGCTGCTCCCTGTCGCTCCTTTATGTGATGACCTGCAGCCCCCCCCACTCTGATGGCCCTCCGCTGAGCCATGCTCTCCCCCGCGCTGGACCCAACCACCCCGGCCTAGGGGGCACGGGGCCGGGGATTGGAGCAGGCATCGGTGGGACAGGAGGAGCCCGAGCTCCTCAAAGCGGTGGACAGCCCGGTGTTAAATCTTATCAGGCGCTCCTCCAAGAGCGCGAGGAGCAGCATCGCCTCCACATCTCCTCCTTGAAGAAGCAGATAGCTCAGCTCAAGGAGGCTTTGCAGGAGCGTAGCCAGCAGCTGAAAGGAGTGCAGGAGAGCCTGAAGAGAGCTGCTGGGGGCCCAGCAGAGGGACAGGAAGCCGGGGCTGTGTCCCAGGGAGGCGGTCTCGGGGAGGCTCAGGGAGCCAAGAGCCAGCAGGCGGACCTCCAGGAGTTCCTGCGGAGCCAGCTGTCGAAGGCCGAGGTGACCGCAGGCACCAGGCTGCCCAGCGAGTATGCGGTGGTGCCCTTTGAGAGTTTCACCCTGCAGAGGGTGTACCAGCTGGAGATGGGGCTGACGCGTCACCCCGAGGAGAAGCCCGTGAGAAAGGATAAGAGAGAGGCGCTGGGGGAGGTGCTGGAGATGGCCCTGCACAGTCTCAACACGCCATTATCCCAGCAAGACAGCAGGGGCGCAGCGGAAAAAactcaaacaagcaaagtgttCACACCATCTGACTTCATAGAAGGTATCACCCGCACAGAGAAGGACAAAGGGACGCTGTATGAGCTGAGCTTCAGAGGGGAGTCCAGTAATGAATTCAGGCGCCTGGTCCTCTTCCGTCCCTTTGGACCGCTGATGAAGGTGAAAAATGAGAGGGTGGACACAGCAAATGTCCCGATTAACATCATTGTCCCGCTGTCCAGACGCACGGACAAGTTCAAACACTTCATGCACAACTTCAGGGAAGTCTGTGTGCGTCAGGACGGCCGGGTCCATCTGACGGTGGTGTATTTTGGGAAAGAGCAGATGAGCGAAGTCCGCAGCACTCTGGAGAACACATCCAGGGAAGTACATTTTAAGAACTAcactctgctgcagctggacGAGGAGTTTTCTCGGGGACGGGGTCTAGACGTCGGGGCCCGAGCCTGGAAGGGAGGCAATGTGCTGCTTTTCTTCTGCGACGTGGACATCTACTTCACCGTTGACTTCCTCAACACCTGCCGACTCAACACGCAGCCCGGTAAAAAGGTGTTCTACCCGGTGTTATTCAGTCAGTACAACCCAACTCTGATCTATGGAAGTCCTGAACATGTCCCACCTGTGGAGCAACAGCTGGTGATCAAGAAAGACACAGGGTTCTGGAGGGATTTCGGTTTCGGCATGACCTGCCAATACAGGTCCGACTTCATCAACATAGGAGGTTTTGACATTGACATCAAGGGCTGGGGCGGGGAAGATGTCCACCTGTACAGGAAGTACCTCCATAGCAACCTCCTCGTGGTCCGAGCACCGTCACGAGGCTTGTTCCACCTGTGGCACGAGAAACACTGCGCTGATGAGCTCCCTCCAGACCAGTACCGCATGTGCATGCAGTCTAAGGCCATGAATGAGGCCTCGCATGGCCAGCTGGGGATGCTGTTCTTCAGGCACGAAATCGAAGCTCACCTCCGCAAACAGAAACAACTGCAAAACTCAAACCCCAAGAAGACATGAAGACTTAAAGGTGGTTGAATTATAATAACTGCAAAGACTGTAATCACTTGAAATACCGCAGATAAGAcaactttaaaggaatagttcaacattttggacgGTATGCTAATTtgttttcttgcagagagttagagaAGAGAATAGATATCCCTCTCAAATGTAAgattggtatcaatcttctcatcttctcagaaagaaaacaaataggTATATTTCCAAAGAGGCGAACTACTCCTTTAATGAAAAATGTGAagactttttacttttctttaaagataattttttagtGCATTTTATTGGACAATTGAAGAtgtgaaaaggggagagagagggggaatgacattcaGAAAAGGGCTGCAGGTTAGAATTGAACCCGCAGTTGCTGTGGCAAGGACTGAGCGTTTGTACATGGGGCATATGCTCAACCaagtgagctatccaggcgccccagtttttttacttttcaaggACTCTGAGCACAACCCTGAGCAATGTGTTGCTCTGAAAAGGACAACAAAAAATTAGGATGAATTCAAACTGGCTCGAGGAACTCATCGACACAACTGGAGTTGGACATTATTCAACAGACTGTCTGAAACCATCTGTAATTTAATATCCATTTGTAATTTCCTCTGTAACTGCAGGAAAGTCTTTTAGAAGGAAAATACAGCACCTATGTTTGAGCTACGAAGTGCTTCTGAACTTTGTGCCTTCTGCCATTAAAACCTGAACACGGTCTTTTCAAGATGGCCAGTGAAGAATTGAACGTACAGGTTTTATATGTAGGGAAACAGAGCCACCTAGTGGACTGAAAGTGGACAACATGTTGGTGCATAAACAATGAAGGACTCTTTTAAAGCCTGGAATGgccttgttttttaaataaattattaattcCTTTATTTATGTTTGTTATTAATTCTTAAATGCCACCATGTATAAGTATTATTATTTCCGATCTGTTATTGCCTGGACAGTATTCTGTGTGGGTCCATTCACCTCTATAATGAATGGAAAAACATTGAAGGTTTTTGTCAGTAAAATTACCGTTTTTCTCAATAAGCATCCTAAATATAAGATGTATGTAGGCTATTTATGCCCAAcatgttaaataataaatataaatacatatattttatattataatataatgtttatttaaaataaaaatgtaaaagataaAACATAATGTAGACTGCCCTGACATTGACGATGGCTTAACAAGTCAGAATGACACTTATTGATcctaatatttttgtttttgtcaatcaaattacattacatgtattACTGAGCAGTCACAGAAACTGGCGATGTTAGGTTTAGAGATATAACTGTCTCGATCGTTcctttatatttgttttaatatatattatatatttgtctCCCATAAATCTTGCTCCAGCACTTCAATTAAAGCGAGCTGTACTTTTGGTGGATGACCATAGATGTGAAAAGAGGCGCTTTTTGAGTTGAAACAATTGTTTGCTATTGAAACATTCCTtatgaaaacattaaatataattgaaatgtacatttcaagTTATTTTTTCACTTCATGTAAATGAGTTGAATAAAACCtatttctgcattgag
>XM_039780453.1
TTTGACTGTGACTCTCTGCACATAAATCTCAGTCACACCAGCCACTTTACAGTGATGAATCTTTCTCCTGGAACGTAACAACAGGGAATGACTGCTTTGCCACCGAGGGAAAACAACATGGGGAAACCACCGCTCACCACAGAGGATTGGCTTTCTCATGAAACATAGCATTTTCCGCCACACTGCTTCATCCGGGCTGATGCGAAAAGGACATTATGAACTGACTGAGGGAGTCAGCGAACAGATGAGTCACATATGAGTGATAGCTGATGTAACATCGTTTGTGCCTGAGTCTTTTTGCTGACCATGGAGCAAATTGGAGCAACAGAAagggaaaaagtgttttttctcATACGTTCACCCTGCCATTGACAAAACAAATTACAGTCTCAGGCAGTGGAGAGGCGATGACCTAATTCAGATGAAATGACCTCATACTGATAAGTAGCTGGCCTCCTCACTGGGTGATGGAACATAATCACAAATGGACTCTTATCATCAAGGCTGGAGTGTGTGAGGTTACATGATATTtccgtgtgtgtctttgtgtgtgtgtatgtttaacgCAGAGGAGTGAGTTTTGATGCTACATGCAGCAATGTTGCGGCGTGGACTGCTAGCCTGGGTCTCCCGTGTTGGAGGCGTGCTGGTGCTCCTCTGCTGCTCCCTGTCGCTCCTTTATGTGATGACCTGCAGCCCCCCCCACTCTGATGGCCCTCCGCTGAGCCATGCTCTCCCCCGCGCTGGACCCAACCACCCCGGCCTAGGGGGCACGGGGCCGGGGATTGGAGCAGGCATCGGTGGGACAGGAGGAGCCCGAGCTCCTCAAAGCGGTGGACAGCCCGGTGTTAAATCTTATCAGGCGCTCCTCCAAGAGCGCGAGGAGCAGCATCGCCTCCACATCTCCTCCTTGAAGAAGCAGATAGCTCAGCTCAAGGAGGCTTTGCAGGAGCGTAGCCAGCAGCTGAAAGGAGTGCAGGAGAGCCTGAAGAGAGCTGCTGGGGGCCCAGCAGAGGGACAGGAAGCCGGGGCTGTGTCCCAGGGAGGCGGTCTCGGGGAGGCTCAGGGAGCCAAGAGCCAGCAGGCGGACCTCCAGGAGTTCCTGCGGAGCCAGCTGTCGAAGGCCGAGGTGACCGCAGGCACCAGGCTGCCCAGCGAGTATGCGGTGGTGCCCTTTGAGAGTTTCACCCTGCAGAGGGTGTACCAGCTGGAGATGGGGCTGACGCGTCACCCCGAGGAGAAGCCCGTGAGAAAGGATAAGAGAGAGGCGCTGGGGGAGGTGCTGGAGATGGCCCTGCACAGTCTCAACACGCCATTATCCCAGCAAGACAGCAGGGGCGCAGCGGAAAAAactcaaacaagcaaagtgttCACACCATCTGACTTCATAGAAGGTATCACCCGCACAGAGAAGGACAAAGGGACGCTGTATGAGCTGAGCTTCAGAGGGGAGTCCAGTAATGAATTCAGGCGCCTGGTCCTCTTCCGTCCCTTTGGACCGCTGATGAAGGTGAAAAATGAGAGGGTGGACACAGCAAATGTCCCGATTAACATCATTGTCCCGCTGTCCAGACGCACGGACAAGTTCAAACACTTCATGCACAACTTCAGGGAAGTCTGTGTGCGTCAGGACGGCCGGGTCCATCTGACGGTGGTGTATTTTGGGAAAGAGCAGATGAGCGAAGTCCGCAGCACTCTGGAGAACACATCCAGGGAAGTACATTTTAAGAACTAcactctgctgcagctggacGAGGAGTTTTCTCGGGGACGGGGTCTAGACGTCGGGGCCCGAGCCTGGAAGGGAGGCAATGTGCTGCTTTTCTTCTGCGACGTGGACATCTACTTCACCGTTGACTTCCTCAACACCTGCCGACTCAACACGCAGCCCGGTAAAAAGGTGTTCTACCCGGTGTTATTCAGTCAGTACAACCCAACTCTGATCTATGGAAGTCCTGAACATGTCCCACCTGTGGAGCAACAGCTGGTGATCAAGAAAGACACAGGGTTCTGGAGGGATTTCGGTTTCGGCATGACCTGCCAATACAGGTCCGACTTCATCAACATAGGAGGTTTTGACATTGACATCAAGGGCTGGGGCGGGGAAGATGTCCACCTGTACAGGAAGTACCTCCATAGCAACCTCCTCGTGGTCCGAGCACCGTCACGAGGCTTGTTCCACCTGTGGCACGAGAAACACTGCGCTGATGAGCTCCCTCCAGACCAGTACCGCATGTGCATGCAGTCTAAGGCCATGAATGAGGCCTCGCATGGCCAGCTGGGGATGCTGTTCTTCAGGCACGAAATCGAAGCTCACCTCCGCAAACAGAAACAACTGCAAAACTCAAACCCCAAGAAGACATGAAGACTTAAAGGTGGTTGAATTATAATAACTGCAAAGACTGTAATCACTTGAAATACCGCAGATAAGAcaactttaaaggaatagttcaacattttggacgGTATGCTAATTtgttttcttgcagagagttagagaAGAGAATAGATATCCCTCTCAAATGTAAgattggtatcaatcttctcatcttctcagaaagaaaacaaataggTATATTTCCAAAGAGGCGAACTACTCCTTTAATGAAAAATGTGAagactttttacttttctttaaagataattttttagtGCATTTTATTGGACAATTGAAGAtgtgaaaaggggagagagagggggaatgacattcaGAAAAGGGCTGCAGGTTAGAATTGAACCCGCAGTTGCTGTGGCAAGGACTGAGCGTTTGTACATGGGGCATATGCTCAACCaagtgagctatccaggcgccccagtttttttacttttcaaggACTCTGAGCACAACCCTGAGCAATGTGTTGCTCTGAAAAGGACAACAAAAAATTAGGATGAATTCAAACTGGCTCGAGGAACTCATCGACACAACTGGAGTTGGACATTATTCAACAGACTGTCTGAAACCATCTGTAATTTAATATCCATTTGTAATTTCCTCTGTAACTGCAGGAAAGTCTTTTAGAAGGAAAATACAGCACCTATGTTTGAGCTACGAAGTGCTTCTGAACTTTGTGCCTTCTGCCATTAAAACCTGAACACGGTCTTTTCAAGATGGCCAGTGAAGAATTGAACGTACAGGTTTTATATGTAGGGAAACAGAGCCACCTAGTGGACTGAAAGTGGACAACATGTTGGTGCATAAACAATGAAGGACTCTTTTAAAGCCTGGAATGgccttgttttttaaataaattattaattcCTTTATTTATGTTTGTTATTAATTCTTAAATGCCACCATGTATAAGTATTATTATTTCCGATCTGTTATTGCCTGGACAGTATTCTGTGTGGGTCCATTCACCTCTATAATGAATGGAAAAACATTGAAGGTTTTTGTCAGTAAAATTACCGTTTTTCTCAATAAGCATCCTAAATATAAGATGTATGTAGGCTATTTATGCCCAAcatgttaaataataaatataaatacatatattttatattataatataatgtttatttaaaataaaaatgtaaaagataaAACATAATGTAGACTGCCCTGACATTGACGATGGCTTAACAAGTCAGAATGACACTTATTGATcctaatatttttgtttttgtcaatcaaattacattacatgtattACTGAGCAGTCACAGAAACTGGCGATGTTAGGTTTAGAGATATAACTGTCTCGATCGTTcctttatatttgttttaatatatattatatatttgtctCCCATAAATCTTGCTCCAGCACTTCAATTAAAGCGAGCTGTACTTTTGGTGGATGACCATAGATGTGAAAAGAGGCGCTTTTTGAGTTGAAACAATTGTTTGCTATTGAAACATTCCTtatgaaaacattaaatataattgaaatgtacatttcaagTTATTTTTTCACTTCATGTAAATGAGTTGAATAAAACCtatttctgcattgag

Function

NR:

description
PREDICTED: chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

GO: NA

KEGG:

id description
K00746 CSGALNACT1_2; chondroitin sulfate N-acetylgalactosaminyltransferase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780452.1 True 3973 mRNA 0.47 8 23229837 23259542
XM_039780453.1 False 3961 mRNA 0.46 8 23238910 23259542

Neighbor

gene id symbol gene type direction distance location
nxnl2 nxnl2 coding upstream 3224 23223687 ~ 23226613 (+)
slc45a2 slc45a2 coding upstream 26907 23169487 ~ 23202930 (+)
amacr amacr coding upstream 64636 23155838 ~ 23165201 (+)
LOC120545462 ppef2,LOC103366113 coding upstream 141427 23074570 ~ 23088410 (+)
LOC120544950 LOC103473489,LOC103142714,LOC106917991,LOC106959058,LOC108231074 coding upstream 193741 23015127 ~ 23036096 (+)
plpp1a plpp1,LOC102797153 coding downstream 3930 23263472 ~ 23277088 (+)
dhx29 LOC103364531 coding downstream 42047 23301589 ~ 23312531 (+)
itga1 itga1 coding downstream 96681 23356223 ~ 23406309 (+)
kcmf1 kcmf1 coding downstream 147830 23407372 ~ 23417210 (+)
LOC120545384 LOC104922461,LOC103364542 coding downstream 199218 23458760 ~ 23470507 (+)
G177093 NA non-coding upstream 48570 23180700 ~ 23181267 (+)
G177091 NA non-coding upstream 52335 23172252 ~ 23177502 (+)
G177089 NA non-coding upstream 58159 23166559 ~ 23171678 (+)
G177079 NA non-coding upstream 87902 23141729 ~ 23141935 (+)
G177043 NA non-coding upstream 94950 23134649 ~ 23134887 (+)
G177169 NA non-coding downstream 70608 23330150 ~ 23331248 (+)
G177170 golph3,LOC103364537,LOC106962713 non-coding downstream 72356 23331898 ~ 23335577 (+)
LOC120545237 NA non-coding downstream 76765 23336307 ~ 23347393 (+)
G177177 NA non-coding downstream 165302 23424844 ~ 23426902 (+)
G177244 NA non-coding downstream 276341 23535883 ~ 23536398 (+)
G177094 NA other upstream 45575 23182673 ~ 23184262 (+)
klhl8 klhl8 other upstream 221003 22998253 ~ 23008834 (+)
G176870 cplx4 other upstream 692500 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 705432 22496413 ~ 22524405 (+)
G176753 NA other upstream 947674 22278880 ~ 22282163 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 181441 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 463936 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 464624 23724166 ~ 23724245 (+)
LOC120546141 NA other downstream 466432 23725974 ~ 23726052 (+)
dnlz dnlz,LOC104941974 other downstream 895843 24155385 ~ 24157621 (+)

Expression


Co-expression Network