tmem38b (tmem38b)


Basic Information

Item Value
gene id tmem38b
gene name tmem38b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21729671 ~ 21742031 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780492.1
ACACGGAACAGGAATTCCTGCTATGCGGCCGGTGACAGCCATGGGTGACAGCGTCGTCGCAGCCCGTCGTCCGTGGTGACACCGGTGGTGACCACCGTCTGGTGTTCCAGATCTGTTGCCTGGCGACGAGCGGCGATCAACTAACCAGCTGTGAGCAACTTGGCAGCAGTTTATCCGAAGACACACAGCTGTTTGGGCCACTGTCAGACTTTACAGGCGGTGGAGGAAGCCCTGATGCTCTGAGTTGGACCGGTGCCTTTTCTCCACTTGAACTCTTCGCTGGGATTAACTAGACTAGCTTCCTCTTGCTAAGGAGTTTTGCAGATAAGATTATGGATTTGTTCGGGGTGTTGCATTTGGACGAGCTGTCCCACGGACTGGCAAACTTGTCAATGTTTCCATACTTTGACATGGCGCACTACATCGTGTCAATCATGGCTCTGAGGGAGCAGCCAGGTGTTCTTGAGGTTTCCAGAGTCAGCCCCTTAGCCTGCTGGTTCAGCTCCATGCTCTTCTGTTTTGGTGGAGGTGTGCTGTCTGCCATCATGCTTGCCGAGCCAGCTGTTGCACCTTTGTCCAACAGCACCAGTGTTCTGCTTGCTTCAATCACATGGTACCTAGTGTTTTACTGCCCCATGGACCTGGTGTACTGTTGTGCTGCCCTGCTGCCTCTCAGGCTAGTGCTGTCAGGGATGAAGGAAGTGACCAGGACGTGGAAAGTGCTCGGAGGGGTTACCCAGGCACACAGTAAATACAAAGACAGTCTGATGGTTATGATTGCCATTGGATGGGCTAAAGGTGCTGGAGGTGGTCTGATAAGTAATTTTGAGCAGCTTGTTCGAGGCGTATGGAAACCAGAGACTAATGAGCTCCTCAAAATGTCTTACCCCACCAAGATCACCCTGATAGGGGCGGTGCTGTTTGCTCTGCAGCAGACCCACTATCTGCCTCTCCAGAAGCACCACCTGATGCTCATCTACACCATATTCACAGTCGTCAACAAGTCAAAGATGATGCTGACAGGTTCCTCCGCCTCACCATTCGCTGGCATTGAGTCGGCCATCTATAAGACCCTTTTCACCGGCCACTCCCCTTATGCTGCCCTCACCAGCGAGGAAAAGAAAGCGTGCATCAATAACGGCGCAACCAACGGGACGACCTCAACTGCCACAACTGGTGGAAATAGAGTAGCGGGGACGAACACCCTGGTTTCTCCTGTCAACGGACAAAGTGGATTGCTCAAAGCCAAAGAGGAGTCAGAGAACGCAGAGACAACAAACTGCAAGAAGAGCAAATAGTCAGCCTCTGCCCCATAGCGCCTTTTCACCTCTAAGCAGGGTTGTGGAGTCATTTCTGATTCAGATTGGTCACTTCAGGACTTATTTAtgtgctgtttttctttttatcaagacatatttttgttccatctaaaacatgttttttaataattcctgAGAACAAAATTTTTATTGTTGGATAATCACCCCGTCCTTAAAGTCCTGTAATATTTATGCTGGATGTGAAATTCATACTATCCTCGAGCAGATTGCACACTTGCAGTAAAATGTGTAGCTtgatttttaatatatatttataataattaataatttaatctCTGGGTTTTGGGAACAGTTGTGCACCTGCTGATCTTTGAATGTTTTCTGCTTTATGTAAATGCTGTTTTTCATACTATGAAATGATTAGAAACAATTTTTTAAAGAGAgattatattctatatattctatattcctGTCTTCATACTAAATAATTGCACTcttgaatgtattttaaaatggaTGACAACTTTTTATTATATGCAGTTTCTTCTCGTAAATGCTTTGAATTACACTTGCAAGCATGAGAGTAAACTGGTTTAAATGCactataaaaatgtgtttttgtga
>XM_039780493.1
AGATTATGGATTTGTTCGGGGTGTTGCATTTGGACGAGCTGTCCCACGGACTGGCAAACTTGTCAATGTTTCCATACTTTGACATGGCGCACTACATCGTGTCAATCATGGCTCTGAGGGAGCAGCCAGGATCCGTCATATTTATCTGGTGACCCTAAGGTGGGGTCCAACCCCTAGGATGGAAACAACTGGACAAAACTACCTGACTGGTGTTCTTGAGGTTTCCAGAGTCAGCCCCTTAGCCTGCTGGTTCAGCTCCATGCTCTTCTGTTTTGGTGGAGGTGTGCTGTCTGCCATCATGCTTGCCGAGCCAGCTGTTGCACCTTTGTCCAACAGCACCAGTGTTCTGCTTGCTTCAATCACATGGTACCTAGTGTTTTACTGCCCCATGGACCTGGTGTACTGTTGTGCTGCCCTGCTGCCTCTCAGGCTAGTGCTGTCAGGGATGAAGGAAGTGACCAGGACGTGGAAAGTGCTCGGAGGGGTTACCCAGGCACACAGTAAATACAAAGACAGTCTGATGGTTATGATTGCCATTGGATGGGCTAAAGGTGCTGGAGGTGGTCTGATAAGTAATTTTGAGCAGCTTGTTCGAGGCGTATGGAAACCAGAGACTAATGAGCTCCTCAAAATGTCTTACCCCACCAAGATCACCCTGATAGGGGCGGTGCTGTTTGCTCTGCAGCAGACCCACTATCTGCCTCTCCAGAAGCACCACCTGATGCTCATCTACACCATATTCACAGTCGTCAACAAGTCAAAGATGATGCTGACAGGTTCCTCCGCCTCACCATTCGCTGGCATTGAGTCGGCCATCTATAAGACCCTTTTCACCGGCCACTCCCCTTATGCTGCCCTCACCAGCGAGGAAAAGAAAGCGTGCATCAATAACGGCGCAACCAACGGGACGACCTCAACTGCCACAACTGGTGGAAATAGAGTAGCGGGGACGAACACCCTGGTTTCTCCTGTCAACGGACAAAGTGGATTGCTCAAAGCCAAAGAGGAGTCAGAGAACGCAGAGACAACAAACTGCAAGAAGAGCAAATAGTCAGCCTCTGCCCCATAGCGCCTTTTCACCTCTAAGCAGGGTTGTGGAGTCATTTCTGATTCAGATTGGTCACTTCAGGACTTATTTAtgtgctgtttttctttttatcaagacatatttttgttccatctaaaacatgttttttaataattcctgAGAACAAAATTTTTATTGTTGGATAATCACCCCGTCCTTAAAGTCCTGTAATATTTATGCTGGATGTGAAATTCATACTATCCTCGAGCAGATTGCACACTTGCAGTAAAATGTGTAGCTtgatttttaatatatatttataataattaataatttaatctCTGGGTTTTGGGAACAGTTGTGCACCTGCTGATCTTTGAATGTTTTCTGCTTTATGTAAATGCTGTTTTTCATACTATGAAATGATTAGAAACAATTTTTTAAAGAGAgattatattctatatattctatattcctGTCTTCATACTAAATAATTGCACTcttgaatgtattttaaaatggaTGACAACTTTTTATTATATGCAGTTTCTTCTCGTAAATGCTTTGAATTACACTTGCAAGCATGAGAGTAAACTGGTTTAAATGCactataaaaatgtgtttttgtga

Function

symbol description
tmem38b Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 14. Orthologous to human TMEM38B (transmembrane protein 38B).

NR:

description
PREDICTED: trimeric intracellular cation channel type B

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016020 membrane cellular_component
GO:0005261 cation channel activity molecular_function

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780492.1 True 1904 mRNA 0.46 6 21729671 21742031
XM_039780493.1 False 1657 mRNA 0.44 7 21729998 21742031

Neighbor

gene id symbol gene type direction distance location
edf1 edf1,LOC106563255 coding upstream 74520 21651855 ~ 21655151 (+)
prrc2b NA coding upstream 82430 21613897 ~ 21647241 (+)
LOC120545922 plpp7,LOC102795753,LOC103473848 coding upstream 118833 21601342 ~ 21610838 (+)
nup214 NA coding upstream 145099 21546834 ~ 21584572 (+)
LOC120545487 nacc2 coding upstream 186416 21513173 ~ 21543255 (+)
znf462 znf462,LOC103359970 coding downstream 53606 21795637 ~ 21845058 (+)
rad23b rad23b coding downstream 111797 21853828 ~ 21862135 (+)
LOC120545760 snca,LOC104940963,LOC100691213,LOC101468074,LOC107374679,LOC103142753,LOC102228921 coding downstream 208227 21950258 ~ 21962665 (+)
sema4d sema4d coding downstream 270904 22012935 ~ 22054041 (+)
shc3 shc3,LOC102305817 coding downstream 314009 22056040 ~ 22086981 (+)
G176644 NA non-coding upstream 74084 21655203 ~ 21655587 (+)
G176565 ak1 non-coding upstream 319212 21401914 ~ 21410459 (+)
G176559 NA non-coding upstream 330668 21397647 ~ 21399003 (+)
G176542 NA non-coding upstream 574816 21151267 ~ 21154855 (+)
G176507 NA non-coding upstream 792379 20936806 ~ 20937292 (+)
G176696 nop14 non-coding downstream 222065 21964096 ~ 21964825 (+)
G176702 NA non-coding downstream 229117 21971148 ~ 21971498 (+)
G176703 NA non-coding downstream 229607 21971638 ~ 21971985 (+)
G176704 NA non-coding downstream 230078 21972109 ~ 21972443 (+)
G176723 NA non-coding downstream 315656 22057687 ~ 22057895 (+)
G176526 NA other upstream 782616 20946684 ~ 20947055 (+)
pappaa pappa other upstream 1108885 20515347 ~ 20620786 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other upstream 1814991 19911836 ~ 19914680 (+)
LOC120545529 ermp1,LOC102800265 other upstream 2327292 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 3005886 18676021 ~ 18723785 (+)
G176753 NA other downstream 536849 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 754382 22496413 ~ 22524405 (+)
G176870 cplx4 other downstream 789877 22531908 ~ 22537337 (+)
klhl8 klhl8 other downstream 1256222 22998253 ~ 23008834 (+)
G177094 NA other downstream 1440642 23182673 ~ 23184262 (+)

Expression


Co-expression Network