kcmf1 (kcmf1)


Basic Information

Item Value
gene id kcmf1
gene name kcmf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23407372 ~ 23417210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780687.1
CTTGCAAAATTTAGCGATAAGTGACACTCTAGGAGGGGAAGCAGAACAAACTGTAAGCTGCTGGCGGATCCATCTTGCTCGTACAAGAGGCGAGGTTGAAGGCTTTTATCAGTTTAGTATCTAAAATACTGTATCGTTCCCCGTTAACCGCGCTGGGGAGGCCGAGGCGGGGCTGTGCCGCTGTTTGTAGGATGTCCCGACATGAGGgtgTGAGCTGTGATGCATGTTTAAAAGGGAACTTTAGAGGAAGACGGTTTAAGTGTTTAATTTGCTACGACTACGACCTGTGCGCATCGTGCTACGAGAGTGGAGCCACGACAACAAGACACACCACAGAGCACCCCATGCAGTGTATATTAACCAGGGTAGATTATGACTTGTATTATGGAGGAGACTCTTTTTCAGTAGAGCAACCCCAGTCATTCACATGTCCTTACTGTGGCAAGATGGGCTACACAGAGACATCCCTGCAGGAGCATGTCACCTCAGAACATGCAGAGACTTCCACAGAGGTGatctGTCCAATATGTGCTGCCTTGCCAGGAGGGGACCCCAACCACGTCACAGATGATTTTACAGCTCACCTCACACTTGAACACAGAGCGCCAAGAGATTTAGATGAGTCCAGCAGTGTTCGACATGTACGCAGGATGTTCCACCCTGGCCGAGGACTGGGCGGTCCCAGAGCACGACGGACAAATATGCACTTTACTAGCGGCTCCACGGGTGGACTTTCATCCTCCTCATCACAGAGCTCCACCTACACCCCCAGTAACAGGGAAGCAATGGACCCAATCGCAGAGTTGTTGTCTCAGCTGTCAGGTGTGCGACGCGCAGCAGGGGGGCAAATAAACTCATCAGGGCCTTCAGCCTCTCAGCTCCAGCAGCTCCAGATGCAACTGCAGTTGGAGCGGCAGCAGGCTCAGGCAGCACGACAGCAAGTAGAGACGGGTCGCCACGCGACGCGACGCAGCAACAACCCGGGCAACACTGGCAACTCCATCCCTCCACCCAGCACAGCAACTGCCAACACTGCCACTGTGGGTGAAAACAATCCCTCGTCCTCGTCCCACAGCTCCCAGTTCCTATTAGCACGGTTGAATGAACCTAAGATGTCCGAAGCAGAGCGGCAGTTTCTAGAAGGAGAGCGCGCCGACCGCAGCCTGTTTGTACAGGAGCTGCTTTTGTCCACGCTGATGCACGAAGAGAGCTCTTCTTCTGACGAGGAAGAGCGTCGAGACTTCGCCGACTTTGGAGCCATGGGCTGCGTGGATATCATGCCTTTAGATGTGGCGTTGGAGAACCTCCAGCTTAGAGAGCGCAGCTCTACGGGGAAGGAGCCTCCGCCGCCGCCTCTTTGATGTCCGAGGATCAAGTAGACTGTGTCCTCTCTGCTGCAACTGTCAGTGATGGGCAGCAAACAGCAGCAGTCCTCCCTGGCCTCAccctcctttctctcttctctatTTTCTGAGTTTGTTTTTGGTGATTGTAATTTCAGGCCTGTCAccatttttgttacattgtaaacaaaaataaatgagaGCAAGTGGGATAAATGTGCGAGTGCGCAATAGCAACTGAGTGAGCGAGCGAGACGAGAGAAATATataaatctatatatatataaaatatatatgaagTTGATAATCAATCCACATAACGTTTCTTTTCTTTATCAGGTAAATGTTACAGGCAGCTGTGGCAGACCTTTGCTTCCTGTGACATGCAAATGGCTCTCCATATAAATAATCCACATTCAAAAGTCAAGAGGGCAAAGGCTCCTCTGAtgaagctgctgtgtgtgtgtgtttatgactattaataaataaaaagtgcttGGATGGGTTACCATAACTACTGCATGCAGTTATTTGCAGCGTgcatgacttttaatgacattgtcattaaaacttttaaaaagataTCCCAAAGCTTTCAACTGTTTTTAAATGGCTATTTCAAACATGGTTAAGTATTGGAAATTGAGTAGTTTACATAACTGATATGAAGAAATTGAACTCTAACAATATATTTTGTTCGTTTTTTTT

Function

symbol description
kcmf1 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to be involved in synaptic signaling. Predicted to be active in plasma membrane. Orthologous to human KCMF1 (potassium channel modulatory factor 1).

NR:

description
ZK652.6

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22376 KCMF1, FIGC; E3 ubiquitin-protein ligase KCMF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780687.1 True 2051 mRNA 0.48 7 23407372 23417210

Neighbor

gene id symbol gene type direction distance location
itga1 itga1 coding upstream 1063 23356223 ~ 23406309 (+)
dhx29 LOC103364531 coding upstream 94841 23301589 ~ 23312531 (+)
plpp1a plpp1,LOC102797153 coding upstream 130284 23263472 ~ 23277088 (+)
csgalnact1a LOC102302787 coding upstream 147830 23229837 ~ 23259542 (+)
nxnl2 nxnl2 coding upstream 180759 23223687 ~ 23226613 (+)
LOC120545384 LOC104922461,LOC103364542 coding downstream 41550 23458760 ~ 23470507 (+)
LOC120545381 LOC103364544,LOC103364545,LOC100697171,LOC104922463 coding downstream 55044 23472254 ~ 23492497 (+)
zgc:73226 LOC102294317,LOC100705876,LOC101475642,LOC108230926,LOC103357984 coding downstream 160359 23577569 ~ 23583588 (+)
thbs4b LOC104922466,LOC103357985,LOC101475932,LOC102294017,LOC102209966 coding downstream 176797 23594007 ~ 23611205 (+)
LOC120545389 LOC103357986 coding downstream 194527 23611737 ~ 23619177 (+)
LOC120545237 NA non-coding upstream 59979 23336307 ~ 23347393 (+)
G177170 golph3,LOC103364537,LOC106962713 non-coding upstream 71795 23331898 ~ 23335577 (+)
G177169 NA non-coding upstream 76124 23330150 ~ 23331248 (+)
G177093 NA non-coding upstream 226105 23180700 ~ 23181267 (+)
G177091 NA non-coding upstream 229870 23172252 ~ 23177502 (+)
G177177 NA non-coding downstream 7634 23424844 ~ 23426902 (+)
G177244 NA non-coding downstream 118673 23535883 ~ 23536398 (+)
G177284 NA non-coding downstream 256052 23673262 ~ 23719373 (+)
LOC120545825 NA non-coding downstream 517637 23934847 ~ 23935801 (+)
LOC120545826 NA non-coding downstream 518791 23936001 ~ 23936681 (+)
G177094 NA other upstream 223110 23182673 ~ 23184262 (+)
klhl8 klhl8 other upstream 398538 22998253 ~ 23008834 (+)
G176870 cplx4 other upstream 870035 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 882967 22496413 ~ 22524405 (+)
G176753 NA other upstream 1125209 22278880 ~ 22282163 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 23773 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 306268 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 306956 23724166 ~ 23724245 (+)
LOC120546141 NA other downstream 308764 23725974 ~ 23726052 (+)
dnlz dnlz,LOC104941974 other downstream 738175 24155385 ~ 24157621 (+)

Expression


Co-expression Network