LOC120546054 (susd2)


Basic Information

Item Value
gene id LOC120546054
gene name susd2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18548787 ~ 18557460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780809.1
CAGAAACAAAACTTGGCTAACAGTTTCACACACTGTCATGATGGAAAGATCCACAGCAGTAATATTTGTCTTTCTGGTTTTATGCATCTGCAGGACATTAGGACAGACATGTGAAGGAAACTGTGGAGTAAAATTTGACTTATGTTCATGCCACTCGACATGCACGTCTCTGGAGTACTGCTGTACAGACTATAAAGAATACTGTGTGGAAGTCTTTCCATATTCCGGGTCCATTTTGGGTGGGACGGATTTTATTGTCCTTGAAGCGAGTTTCAATAAGAGTTCTGAGATCATATGCAGGTTCAACCACAATATCAATACTGTGGGGTATGTGGATGAAAACAGTAGAGGCCATTGTATCTCCCCACTATTGTATGAAACAGGATGGGTTCCCCTGCACATCTCCTCAGATAATGGCACTACATTCAGTAGAGTTGGAGCCTGGTTGTCAGTACATACTGGCAAGTTAGATGCTCAGTTTAAGGCGACTATGGTCAACTCAACAAAATGGCAGTACTATGGTACACCAGATGTTGGAGGCACTCTTGAGATGACATGGAATACCTCTTTGGTTAGCGTGGAGAGGGTCAACATAGAGCTCTGGGGATACAGCGAGACAGGAAAACCCTATTCAGACAATTGGCAGGGTGAGTGGGAATATCTGTACTCACTTGCAAAGGATCAGCCCAACAGTGGTTCCTTTAGTTTTTTGCCCAAACCAGCAGAGAACGGCTTTTCGAGTTGGGAGCTTGGCTCTCTACGCATCAGCCCCAGCACCTACCCTGATGGCATGTGGAATGTACAAGCCGCATGGACTGAGGATCACGCCCTGGCCTGGCATCTGGAGGAGAAGTTCAGGCAAAATTCAACAGTTTGGGCCCTGGAGAAATGTTTAGCATGGGACCAGCTGGAAAATCAGCTGCCCAACTTCCTCAGTGAGATCATAGACTGCCCCTGCACTCTGGCTCAAGCAAGAGCAGACACAGGGAGGTTTCATacTGACTATGGCTGTGATGTAGAGAAGGGCAGCGTGTGCACCTACCACCCTGGAAGTGTTCACTGTGTGAGGGCTATACAAGCCAGTCCAAGGTATGCAGCAGGACAACAGTGTTGCTATGACAGCACTGGTGCTCAGGTGCTGACAGCAGACTCAATTGGGGGAAGTACTCCAGACCGAGCACACGACTGGGGCTCCCCTCCATACAAGAAACCCCCTCGAGTTCCCGGACAGTCCCACTGGGTCTACGACGTCCTCAGTTTCTACTACTGCTGCCTGTGGTCTGACAACTGCCACTACTACTTCAAACACCGGCCCTCCAGTGACTGCAGGCGTTACCAGTCACCCAGCTCAGCTGTGGTGTTTGGAGATCCCCACTTCATAACATTTGATGGTGTCAGCTACTCCTTCAATGGCAAAGGGGAATATACCTTGGTGACCTCGGCAAAGAAACGTCTGACAATCCAGGGCAGAACAGAGCCAGTGAACAGAACCACGATAAAAGCAACAAAGTTGACGGCTGTAGCCATGAAAGAAACCCCCTCTGATGTTATTGAGGTGCGGCTGGTCAGCAGTCACAACGGCCTTGAAGTACTGCAGAATCAAAAAACCCTCTCCTTTTCTGAGCAGAGCTGGATGGACCTACATGgtgtgtttgtgttttccccTGCCTCTACAAATGTGACCGTGATGTTCCCCAGTGGAGCCGGGGTGGAAGTGCGACTGAGAGAGGGAACTATGACAACCACCGTGCTCCTGCCAGAGGAGTTCAAAGACTCCACTCTCGGACTGTTGGGAAAGATGAACGGTGACGCCAAAGACGACCTCACCCTCAGCAACGGCCAACTTGTGCTGAACCTCACCAATCCAGAGGAGGTGTTCAGCTTTGGGGCAAGCTGGGCCATCTCCAACAACTCTGCCTTGTTCACATATGATTCAAACTATCTTTTGGACACATATTACTATGTTCCCAGACATGACCATACTTTTGTTCCAGTGTTTTCTGTCCCCGAAAGTCCAGATGATCCATTAGCCAATCAAGCATCCGAGATATGCTCTGGAGAGGGTTCTCAGTTTTGTAGGTATGATATCCTGGTAGGTCGTAGTCCAAGCATGGGAAATGCTACCAAAGTGTCTTTCCAGAGTCACATTTCTCTTGTGGAGGATCTAAAGCGAGTGATATCCTGTGGATGGCTTTCACCACCAAAAAACGGGAAGAAGGAGGGGACCACATATGTACAAGGAGCTAAGGTGCAGCTTTCCTGCGATGACGGCTACACACTCAAAGGATCAGCAGAGCGCATATGCCAGGAGAATGGCCAGTGGACTGGAGATGACTCAAACTGCGTGGTTACCAGTAATGTTGCAGGAATAGTGGCCGGTTCAATCATTGGAGCTGTAGCACTGATTGTGATTATAACAACAATCATACTCCACTCCAGGAAACAGAAAAGaaaagaTGCACATTCAGAAGAAGCTGTGACAAGTGAGGCCCTCTAACCACAACTTTTCATCtactgaaaaatgaaaaacttaaaaatgaaTGCATGCATCAATACGTGCTTACGAAAGATAAAGACACGCATAATATAAAAGAAACATCTTACTTTGGTCATAAACCTTTTAAACCACAGCCATGATCCAGACTAACATGTATTATAAGGTTGAGCAAAGGTCACAGTTAAAGAGTAACTACACACTCCATCTTTTACACACTACATCTTCCATGGCAGAAAAGTATTGTTGCACTGACTTCTATACGAGGAAATTTTAACCTGTGTTGCACTTTTGACCGCACCCACCATAACCACAAAACATCCTGGGCTAAAAACTACAGGTTTAGGTTTAttgaaaaagtgaaaacacTTTGTTATGGAAGGCTTGTGGGTTCATCTACTTCACAGTCAGTCATTAAGTTGGATGATGTCAAATGTAGCTATGTAAAAATGATCACTCAATAACTTACCGTAAGTCATATTTTAAGCTAACAATAATTGATAAAACAATGTCAAAAGTGAAACATTAATGATCCAACCTGCAACTGTCTGAACACTCCATTAATGTTAATGTCATACATCATCAAGTGTTTGGGCTACAGAAGATCTTTGGTCAGCACTTCAGATCAGCTGTATACAGACTATCTCACTGATGTGTACTTATTGTTTGTGTACTGTCATCAAATGCTGATGAATATTGTTATACAGTTTACTATTTTCAAATttggtggacaataaagtttttcTAATACAG
>XM_039780810.1
CAGAAACAAAACTTGGCTAACAGTTTCACACACTGTCATGATGGAAAGATCCACAGCAGTAATATTTGTCTTTCTGGTTTTATGCATCTGCAGGACATTAGGACAGACATGTGAAGGAAACTGTGGAGTAAAATTTGACTTATGTTCATGCCACTCGACATGCACGTCTCTGGAGTACTGCTGTACAGACTATAAAGAATACTGTGTGGAAGTCTTTCCATATTCCGGGTCCATTTTGGGTGGGACGGATTTTATTGTCCTTGAAGCGAGTTTCAATAAGAGTTCTGAGATCATATGCAGGTTCAACCACAATATCAATACTGTGGGGTATGTGGATGAAAACAGTAGAGGCCATTGTATCTCCCCACTATTGTATGAAACAGGATGGGTTCCCCTGCACATCTCCTCAGATAATGGCACTACATTCAGTAGAGTTGGAGCCTGGTTGTCAGTACATACTGGCAAGTTAGATGCTCAGTTTAAGGCGACTATGGTCAACTCAACAAAATGGCAGTACTATGGTACACCAGATGTTGGAGGCACTCTTGAGATGACATGGAATACCTCTTTGGTTAGCGTGGAGAGGGTCAACATAGAGCTCTGGGGATACAGCGAGACAGGAAAACCCTATTCAGACAATTGGCAGGGTGAGTGGGAATATCTGTACTCACTTGCAAAGGATCAGCCCAACAGTGGTTCCTTTAGTTTTTTGCCCAAACCAGCAGAGAACGGCTTTTCGAGTTGGGAGCTTGGCTCTCTACGCATCAGCCCCAGCACCTACCCTGATGGCATGTGGAATGTACAAGCCGCATGGACTGAGGATCACGCCCTGGCCTGGCATCTGGAGGAGAAGTTCAGGCAAAATTCAACAGTTTGGGCCCTGGAGAAATGTTTAGCATGGGACCAGCTGGAAAATCAGCTGCCCAACTTCCTCAGTGAGATCATAGACTGCCCCTGCACTCTGGCTCAAGCAAGAGCAGACACAGGGAGGTTTCATacTGACTATGGCTGTGATGTAGAGAAGGGCAGCGTGTGCACCTACCACCCTGGAAGTGTTCACTGTGTGAGGGCTATACAAGCCAGTCCAAGGTATGCAGCAGGACAACAGTGTTGCTATGACAGCACTGGTGCTCAGGTGCTGACAGCAGACTCAATTGGGGGAAGTACTCCAGACCGAGCACACGACTGGGGCTCCCCTCCATACAAGAAACCCCCTCGAGTTCCCGGACAGTCCCACTGGGTCTACGACGTCCTCAGTTTCTACTACTGCTGCCTGTGGTCTGACAACTGCCACTACTACTTCAAACACCGGCCCTCCAGTGACTGCAGGCGTTACCAGTCACCCAGCTCAGCTGTGGTGTTTGGAGATCCCCACTTCATAACATTTGATGGTGTCAGCTACTCCTTCAATGGCAAAGGGGAATATACCTTGGTGACCTCGGCAAAGAAACGTCTGACAATCCAGGGCAGAACAGAGCCAGTGAACAGAACCACGATAAAAGCAACAAAGTTGACGGCTGTAGCCATGAAAGAAACCCCCTCTGATGTTATTGAGGTGCGGCTGGTCAGCAGTCACAACGGCCTTGAAGTACTGCAGAATCAAAAAACCCTCTCCTTTTCTGAGCAGAGCTGGATGGACCTACATGgtgtgtttgtgttttccccTGCCTCTACAAATGTGACCGTGATGTTCCCCAGTGGAGCCGGGGTGGAAGTGCGACTGAGAGAGGGAACTATGACAACCACCGTGCTCCTGCCAGAGGAGTTCAAAGACTCCACTCTCGGACTGTTGGGAAAGATGAACGGTGACGCCAAAGACGACCTCACCCTCAGCAACGGCCAACTTGTGCTGAACCTCACCAATCCAGAGGAGGTGTTCAGCTTTGGGGGGCCATCTCCAACAACTCTGCCTTGTTCACATATGATTCAAACTATCTTTTGGACACATATTACTATGTTCCCAGACATGACCATACTTTTGTTCCAGTGTTTTCTGTCCCCGAAAGTCCAGATGATCCATTAGCCAATCAAGCATCCGAGATATGCTCTGGAGAGGGTTCTCAGTTTTGTAGGTATGATATCCTGGTAGGTCGTAGTCCAAGCATGGGAAATGCTACCAAAGTGTCTTTCCAGAGTCACATTTCTCTTGTGGAGGATCTAAAGCGAG

Function

symbol description
susd2 Is expressed in myotome; pancreas; and pancreatic bud.

NR:

description
PREDICTED: sushi domain-containing protein 2

GO: NA

KEGG:

id description
K23820 SUSD2; sushi domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780809.1 True 3247 mRNA 0.45 16 18548787 18557460
XM_039780810.1 False 2167 mRNA 0.49 13 18548787 18555096

Neighbor

gene id symbol gene type direction distance location
LOC120546057 iscu,LOC100705178,LOC102784710,LOC103373105,LOC104958920,LOC101065972,LOC105915304,LOC101167135 coding upstream 74748 18471247 ~ 18474039 (+)
LOC120545648 NA coding upstream 87015 18458512 ~ 18461772 (+)
setd1ba setd1b coding upstream 127338 18405378 ~ 18421449 (+)
orai1b orai1,LOC103390458 coding upstream 161315 18384808 ~ 18387472 (+)
rnf34b LOC102198247,LOC101472476,LOC102778596,LOC102300128,LOC100691293,LOC108232543 coding upstream 188200 18342719 ~ 18360587 (+)
LOC120546055 LOC103360654,LOC104934677,LOC104958911 coding downstream 1100 18558560 ~ 18560433 (+)
taok3b LOC104958930,LOC103360656 coding downstream 4980 18562440 ~ 18571048 (+)
m17 NA coding downstream 16204 18573664 ~ 18575134 (+)
git2b LOC103360644 coding downstream 147313 18704773 ~ 18723257 (+)
LOC120545567 LOC102210433,LOC104924646,LOC102792360,LOC100707569,LOC104958897 coding downstream 166425 18723885 ~ 18726384 (+)
G175804 rnf185 non-coding upstream 82723 18464270 ~ 18466064 (+)
G175797 NA non-coding upstream 97719 18449802 ~ 18451068 (+)
G175792 NA non-coding upstream 117090 18429684 ~ 18431697 (+)
G175772 NA non-coding upstream 126109 18421529 ~ 18422678 (+)
G175696 NA non-coding upstream 309840 18235236 ~ 18238947 (+)
G175891 NA non-coding downstream 30299 18587759 ~ 18588293 (+)
G175917 NA non-coding downstream 100230 18657690 ~ 18658284 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding downstream 112923 18670383 ~ 18673965 (+)
G175974 NA non-coding downstream 278715 18836175 ~ 18836754 (+)
G175973 NA non-coding downstream 293618 18851078 ~ 18854548 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 646 18536631 ~ 18548141 (+)
tmem120b tmem120b,LOC101471304,LOC102195879 other upstream 148341 18391739 ~ 18400446 (+)
lrrc75bb LOC102299816,LOC101473269,LOC102199085,LOC100691028,LOC103366102 other upstream 219962 18295836 ~ 18328825 (+)
antxr1b LOC100694769,LOC102799311,LOC101477777,LOC102295999 other upstream 403337 18124842 ~ 18145450 (+)
G175640 LOC102204295,LOC100701817,LOC103369925,LOC106514495,LOC101480226 other upstream 453264 18067132 ~ 18095523 (+)
cabp7b cabp7,LOC104925332 other downstream 77566 18635026 ~ 18651069 (+)
LOC120545610 NA other downstream 99064 18656524 ~ 18657619 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other downstream 118561 18676021 ~ 18723785 (+)
LOC120545529 ermp1,LOC102800265 other downstream 822790 19380250 ~ 19402379 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 1354376 19911836 ~ 19914680 (+)

Expression


Co-expression Network